TCONS_00018977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018977
Unique NameTCONS_00018977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018977 ID=TCONS_00018977|Name=TCONS_00018977|organism=Clytia hemisphaerica|type=transcript|length=598bp
tagcaaatgaaaaattgataaaaagtaattaaaaagcAACCACAAGCCGC
TATTACCAGCGCATAGACAACATCATAAATCAATTATAATTGTCGTTGcc
agagaaaaataatttcctaCCAATATCTTCTGGTATTTGTAGTAAGACGT
GATTCCCAATCAGAGTGGATTTGCATTACAATTATCGATGATCCGATaat
gAAGGAGATTACTTGACATGCCAACCAACATATTGATTCTAGCGAAATTG
GGTGCTGGTACTGGTAACAGAACAACTGCTGAACGTATCAGGCAGCACTT
GAACAATTCGGATTTGTGCCCACTTCTTTGTGACGTCACACAATTCCGAT
CACCACGTGACCTTTCTGATTATGTCATCCATAATGACGTCACTTGTCTC
ATTGTTATTCATGCGTACAGAgctggaaaatttttaaacgACATCAGTAT
ACCATTTGCGTTGGTATTTGGTGGAACTGACGTTCAATGTTCATCCTGGA
ATGATCAAGAAAATGCAATCATGGCTGATGTTGTTGCCAAGGCAATAGTT
CTGATCGCGTTTTCAGAAGTCATGAAAGAAGCAGCATCGGTCAAATGG
Run BLAST on NCBI

transcript from alignment at sc0000314:194174..201266+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018977 ID=TCONS_00018977|Name=TCONS_00018977|organism=Clytia hemisphaerica|type=transcript|length=7093bp|location=Sequence derived from alignment at sc0000314:194174..201266+ (Clytia hemisphaerica)
tagcaaatgaaaaattgataaaaagtaattaaaaagcAACCACAAGCCGC
TATTACCAGCGCATAGACAACATCATAAATCAATTATAATTGTCGTTGcc
agagaaaaataatttcctaCCAATATCTTCTGGTATTTGTAGTAAGACGT
GATTCCCAATCAGAGTGGATTTGCATTACAATTATCGATGATCCGATGTA
cgtattttgttatttttttataatgtccAAATACACCTATCTGCAGACAC
GTGTTTTGTCCTTCCCAGGACTCGTCAGTGCGGCTCgggtaagcgagcat
agactgctgttgtctaaccagagtgctcaaaacactaagTTATGAGCTTc
gcataatcgcttgtggtgaaCGGAGAAGCAGAGCTTGCTTCTCAACAGAG
TCTATAGAGTGCTTAATACATGTCCAAATATACAGTTGCTCCGATTCATT
CGATCTATAAGGGGACcaaaattttgtgttaaaagaTTCAAATTACAGAG
AATATTTTTTAAGACATTCCAGTGGAAGGACTAAATGTAATGTTTGATTT
AGAATTACAGaggctcgaattagagagacaGGTTGGCTGTAATGTTCAAC
TTTTGTATTTAAAATAAtcatagtttttattttttattttttaagaatgA
AGGAGATTACTTGACATGCCAACCAACATATTGATTCTAGCGAAATTGGG
TGCTGGTACTGGTAACAGAACAACTGCTGAACGTATCAGGTGcttattta
ttgattttaaagCGACGGGAAGAGTGGGCCTGTAAGGAATTTTTTTGGAT
GGGGTATGAACACAGatctataaagcccgaagggctaagtcaactttaag
ctttctccagcaaaaattttcggagcgcgagatcaaaaaaagtaggcggc
aaacgctatttcgcatctctcaaacaaattgcttgttgtcacgtgattcc
TTTGGttggaaatcctaccaaaacttgcttcacttttcgataaaggccgc
ggATCTAATGAAGCCAATCTAATGAAGCCACCATtggtttttttcattta
atatACAAACAGAGGCTGGACGAATCTCTTCaactcaaaataaatttttg
aaaattatgtggataccccctgaaaaaattacagaaatttcatttcaacc
caggaaaaaatgaaaaaagacttCCCTTAGACCCTCTGCGAACTGTTCTA
GGAATTCTTAATGCAACGAACGTATTTAAAAGTCTCATTTTCTATTGTCT
GGGAAAATTGAAAGAATCCCCCTTAGGGGCTTCAAACTTATTGTACCTGT
CCTGTAGAAACCTTTTTCACAATATCTTTTTAGTCGTTCTTTTCAAAATT
GACAAACCTTTTATTTTTCCAGGCAGCACTTGAACAATTCGGATTTGTGC
CCACTTCTTTGTGACGTCACACAATTCCGATCACCACGTGACCTTTCTGA
TTATGTCATCCATAATGACGTCACTTGTCTCATTGTTATTCATGCGTACA
GAgctggaaaatttttaaacggTTTGGAAATTGTATTACTAAACTTACAG
TGCGGTGTTAAactgggcttttccagaaaaaccgTTCAAAAGTGGAAGAT
ATAATATTGTCAAAGGGAACAAAAAAAGACTGTCAAGCACCTCCTTTTTA
AACAGCTTGATCTGAAAATTTTCCACATGTAAATTTGATCAGCATTCTGG
TGGTCCACCAATGTTATCTGATGTAGGCGGTGAGTGACTAGGAGCTGAGG
GTTGGTGTGGCAATCCACTTAAGTATTCAATCTTCCACAGGGCTAGTGCA
CATAGAAAAGGATATAGACTCCCTGACTTCCACGGCCAACACTTACATAC
TTACTTCAAACACCTTTCAGACATCAGTATACCATTTGCGTTGGTATTTG
GTGGAACTGACGTTCAATGTTCATCCTGGAATGATCAAGAAAATGCAATC
ATGGCTGATGTTGTTGCCAAGGCAATGTGAGTTAAAACCCTAGAAactca
aaaaatctttatttctgTTGCCAAGGGTAACGAAGGCCAAGGAATCATTT
GCATTTGCTAATGATAATAAGGCTCAAGCTTAAGCATTTATATAGCTGGT
ACAGAGAAAATTTGactattttcatgaaatttccaACGACGGAAAACAAC
ATTACCTGAAGTGTAACGGAGCTTAACCTTCGATAAGCATGTTTTCCCAT
TGTGTTTCATGCCGAAAGCATGTGGCAAATCTTTAAACCTTTCCCAAGTT
TTACATTTACTTTgcgttttatatttttcaaattctggtGGTAAATGTTA
CTTTCAATCTATTGTTTGTATGGATTTTTCGTCGCCGTTAGGTAGGTCCG
ATCAACATctagtttgtttttttgtttcgacGGTTTCACTTTCACGAGTC
TCACTTTATCTACACCTTTTCTTTTAGAGTTCTGATCGCGTTTTCAGAAG
TCATGAAAGAAGCAGCATCGGTCAAATGGGTAGTGTATTTGTACATCCAT
CTTTGAATGACATATTTTTTCTCATAGAAGACGCTACTCGTATATGATTT
GTTAAACTAGCCTATTTTCGGTAGCTTTTacttcaactttttaaatttcg
atacACGTTttataataagaaaaaactatataatgAGCATCCTTATATGC
TgtggctaaaatattaagaacaagctaaggaCATTCTGAGGAtctgcaga
ctctaaaacactaaatttttaagaaattgcacaaaatggtgaaattaaga
acattaaaaaaaaattaggcttaaaactttGAGAAtatccgaaggtttca
aaaactgtttttattAGTAAAAGAAAACGTATATTTCACTAAATTCAGTT
TTCATCGGTAATTTCTTCTTCGTTCTTCTTTTAGCCATCAATCttgaaag
agaaaaagatatTTGTACAACCGCAAGGTAAAAGTCATTCCTCCCTTTTT
CGCTCCGTGCATCTTAAACCACCGTGTTAGTGCGATTGAACTCCTATTTG
CAGTTCTCATCAAGTGTAATCCGCTTGGGTGTCAGATTTTGATTAGTTTG
TAATgcaaagttgtattttttttcgTTGTCAGGTGTGACAATTGAGAGGA
TAGGACCGACAAATTATTCGTTTCAACATCTATTCAATGATAATGGGATG
GTGAGTTTGAACTTTGTCTCTCTCGATGATGGATTGTTACTTGTCAAGTA
CCATTAGCAAGTTCTAGACGCGGGACATTATAGCCTCTATAATGAGAAAA
TCAATTCATTATTTCCTGTTCTTTCTCTGCAGAGCGatgttaaaacaaaa
gaaaaggtaCCGATTTTCAATTGATCTATCTTGACTGAAGTTATCACAta
ttggacttttccagaaaaaaacctgttgaggaggtccatccctctttggc
tggaaatgctgtaacctGCTGTAACCCCCTAGAATttcaggcaatttcag
gtttaaacccttctggaattctgaattttagtaggatttaaaaagctacc
cccatggaattccagtcaTTTTTGACAGATTTNCTTTTTCCATACCTTAT
CTGTATTCGATCTTTTCATCTATTGGAATAAACACGAGCTTTTATTATTA
ACCTGATCAACCTATTTAGTTTTAGTAATTACAATTACATGTACTAGACA
TTTTGATTGATAGCGGAAATACCAGCAGCTTTACTCTTCAAGTTACTCAA
TAACGACTATAggagatttgaaattttattttgtagatTCAATATAATGT
ATATTTTTCACATGAGAGAAGATTGAGGGAAAGGCTATGTGATTCCAACC
AAAagacccctgtgtcacagacccgctgaggCCTTAGCCCCagtggaaaa
tttggcaaaaatttcgttcccggtgggaaaaatttcctaaattccagccc
cactgagaaattgactttgatttcatccccattcgaaattcatcgTTCAT
GCAAATTGcaatccaaaaccatccccactggatttggaacaaaataaatt
tttatccccgctgtaagaaaaagtttcaccggggctgtgagacaggggtg
taccaAACAAGACAGCCAAATCTTTCTTGACGATCTTACTTCTCTTTTCT
CTAATCTCTCATGGGAGTAATCAAtgtaataattatttttttgtatgtTT
ACTATATTATTGTTTATTATGAATTTATGAAGAATACTTttcgttttttg
tttgttttctttgatttacaAAATTGAAAGATATTTGAGGGGAAAGCTAA
ACATTCTTAATTAAAGAGAATtgactacatgtttttttttctataagcat
aacgtttataagcatatacaggCTCAGTTATTGGTTCCCTAAACAAtagc
tctattgtttaagaacaatagaatggtAAGCGTAATGtgagcctgatata
ggggtagacaattgcttataaaaaaacatgtatggtGATTTTATAATACA
TACTTCAACATGGCCTTTTTGGGCCTGAACCTGAACCTTTGTAAATTGAA
gtataatgttttttttgcatCATAATCTGCTTGTtcctgttttcttcttt
ttcattttagcaaatgaaaaattgataaaaagtaattaaaaagcAACCAC
AAGCCGCTATTACCAGCGCATAGACAACATCATAAATCAATTATAATTGT
CGTTGccagagaaaaataatttcctaCCAATATCTTCTGGTATTTGTAGT
AAGACGTGATTCCCAATCAGAGTGGATTTGCATTACAATTATCGATGATC
CGATGTAcgtattttgttatttttttataatgtccAAATACACCTATCCG
CAGACAAGtgtttcgtccttcccaggactcatcAGTGCGACTTgggtaag
cgagcatagactgctgttgtcgcaccagagtgctcaaaacactaagTGTT
GAGCTTCGCGTAATCGCTTGTGGTGAACGGAGAAGCAGAGCTTGCTCCTC
AACAGAGTCTATAGAGTGCTTAATACATGTCCAAATATACAGTTGCTCCG
ATTCATTCGATCTACAAGGGGACcaaaattttgtgttaaaagaTTCAAAT
CACAGAGAATATTTTTTAAGACATTCCAGTGGAAGGACTAAATTTAATGT
TTGATTTAGAATTACAGaggctcgaattagagagacaGGTTGGCTGTAAT
GTTCAACTTTTGTatttaaaataatcataatttttattttttatttttta
agaatgAAGGAGATTACTTGACATGCCAACCAACATATTGATTCTAGCGA
AATTGGGTGCTGGTACTGGCAACAGAACCACTGCTGAACGTATCAGGtgc
ttatttatttattttaaagcGACGGGAAGAGTGGGCCTGTAAGGAATTTT
TTTGGATGGGGTATGAACACAGatctataaagcccgaagggataagtcaa
ctttaagctttctccagcaaaagttttcggagcgcgagatcaaaaaaagt
aggcagcaaacgctatttcgcatctctcaaacaaATTGcctgttgtcacg
tgatttctttggtaggaaatcctaccaaaacttgcttcacttttcgatga
AGGCCGCGGATCTAATGAAGCCACCATtggtttttttcatttaatatACA
AACAGAGGCTGGACGAATCTCTTCaactcaaaataaatttttgaaaatta
tgtggataccccctgaaaaaattacagaaatttcatttcaacccaggaaa
aaatgaaaaaagacttCCCTTAGACCCTCTGNTGGAAAAATGAcagaaat
ttcatttcaacccaggaaaaaagaagaaaaaaaacttcccTTAGACCCTC
TGCGAACTGTTCTAGGAATTCTTAATGCAACGAACGTATTAAAGTCTCAT
TTTCTATTGTCTGGGAAAATTGAAAGAACCCCCCTTAGGGGCTTCAGAGT
TATTGTACCTGTCCTGTAAAAACCTTTTTCACAATATCTTTTTAGTCGTT
CTTTTCAAAATTGACAAACCTTTTATTTTTCCAGGCAGCACTTGAACAAT
TCGGACTTGTGCACACTTCTTTGTGACGTCACACAATTCCAATCACCACG
TGACCTTTCTGATTATGTCATTCATAATGACGTCACTTGTCTCATTGTTA
TTCATGCGTACAGAgctggaaaatttttaaacggTTTGGAAATTGTATTA
CTAAACTTACAGTGCGTTGTTAAactgggcttttccagaaaaaccgTTCA
AAAGTGGAAGATATATTGTCAAAGGGAACAAAAAAAGACTGTCAAGCACC
TCCTTTTTAAACAACTTgatctgaaaatttttccacATGTAAATTTGATC
AGCATTCTGGTGGTCCACCAATGTTATCTGATGTAGGCGGTGAGTGACTA
GGAGCTGAGGGTTGATGTGGCAATCCACTTAAGTATTCAATCTTCCACAG
GGCTAGTGCACATAGAAAAGGATATAGACTCCCTGACTTCCACGGCCAAC
ACTTACATACTTACTTCAAACACCTTTCAGACATCAGTATACCATTTGCG
TTGGTATTTGGTGGAACTGACGTTCAATGTTCATCCTGGAATGATCAAGA
AAATGCAATCATGGCTGACGTTGTTGCCAAGGCAATGTGAGTTAAAACCC
TAGAAactcaaaaaatctttatttctgTTGCCAAGGGTAACCAAGGCCAA
GGAATCATTTGCATTTGCTAATGATAATAAGGCTCAAGCTTAAGCATTTA
TATAGCTGGTACAGAGAAAATTTGactattttcatgaaatttccaACGAC
GGAAAACAACATTACCTGAAGTGTAACGGAGCTTAACCTTCGATAAGCAT
GTTTTCCCATTGTGTTTCATGCCGAAAACATGTGGCAAATCTTTAAACCT
TTCCCAAGTTTTACATTTACTTTgcgttttatatttttcaaattctggtG
GTAAATGTTACTTTCAATCTATTGTTTGTATGGATTTTTCGTCGCCGTTA
GGTAGGTCCGATCAACAtctagtttgttttttttgtttcgacGGTTTCAC
TTTCACGAGTCTCACTTTATCATTTATACCTTTTCTTTTAGAGTTCTGAT
CGCGTTTTCAGAAGTCATGAAAGAAGCAGCATCGGTCAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010638XLOC_010638Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018977-exon-sc0000314-1491911889:194174..194370TCONS_00018977-exon-sc0000314-1491911889:194174..194370Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1510915933:194174..194370TCONS_00018977-exon-sc0000314-1510915933:194174..194370Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1575043694:194174..194370TCONS_00018977-exon-sc0000314-1575043694:194174..194370Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1491911889:194819..194912TCONS_00018977-exon-sc0000314-1491911889:194819..194912Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1510915933:194819..194912TCONS_00018977-exon-sc0000314-1510915933:194819..194912Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1575043694:194819..194912TCONS_00018977-exon-sc0000314-1575043694:194819..194912Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1491911889:195546..195694TCONS_00018977-exon-sc0000314-1491911889:195546..195694Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1510915933:195546..195694TCONS_00018977-exon-sc0000314-1510915933:195546..195694Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1575043694:195546..195694TCONS_00018977-exon-sc0000314-1575043694:195546..195694Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1491911889:196044..196149TCONS_00018977-exon-sc0000314-1491911889:196044..196149Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1510915933:196044..196149TCONS_00018977-exon-sc0000314-1510915933:196044..196149Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1575043694:196044..196149TCONS_00018977-exon-sc0000314-1575043694:196044..196149Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1491911889:201215..201266TCONS_00018977-exon-sc0000314-1491911889:201215..201266Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1510915933:201215..201266TCONS_00018977-exon-sc0000314-1510915933:201215..201266Clytia hemisphaericaexon
TCONS_00018977-exon-sc0000314-1575043694:201215..201266TCONS_00018977-exon-sc0000314-1575043694:201215..201266Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:194174..201266 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.247128	0	0.285561	0	0	0	0	0	0	0	0.143818	0	0	0	0	0	0	0	0	0	1.75242	0	0	0.263537	0	0	0	0	0	0
Blast
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BLAST of TCONS_00018977 vs. Swiss-Prot (Human)
Match: GL1D1 (Glycosyltransferase 1 domain-containing protein 1 OS=Homo sapiens GN=GLT1D1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.381e-21
Identity = 43/123 (34.96%), Postives = 69/123 (56.10%), Query Frame = 2 
Query:  230 ILILAKLGAGTGNRTTAERIRQHLNNSDLCPLLCDVTQFRSPRDLSDYVIHNDVTCLIVIHAYRAGKFLNDISIPFALVFGGTDVQCSSWNDQENAIMADVVAKAIVLIAFSEVMKEAASVKW 598
            +L LA L   TGN  TA+R+R HL  +    +L D   F S  ++++ ++  +    + +H YR G+ L    IPF ++FGGTDV   +   ++N +M  V+ +A   +AF+E MKE A  +W
Sbjct:    3 LLFLAVLRPHTGNAVTAQRVRAHLEAAGHVCVLKDAFDFESRSEIANLILAENCEAALALHLYRGGRLLQGHRIPFGVIFGGTDVNEDANQAEKNTVMGRVLEEARFAVAFTESMKEMAQAQW 125
The following BLAST results are available for this feature:
BLAST of TCONS_00018977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GL1D12.381e-2134.96Glycosyltransferase 1 domain-containing protein 1 ... [more]
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