TCONS_00018970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018970
Unique NameTCONS_00018970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3861

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018970 ID=TCONS_00018970|Name=TCONS_00018970|organism=Clytia hemisphaerica|type=transcript|length=3861bp
aatgtcgcgtttttttgcaaacttcaaaaagctgatttttgtctcgcttt
tgcaggactttagattaagtgcttgcgtgcagcatagggtacaaagtcca
aatatgcgtttcccgtaatttttgtatgaagagttaagtCTATACTGTCT
GACAGTCTActttaggggtcactcacatatcgattcttcccacaaCTAAA
AGCATTGCATTGCGTACGGCCATCAAGAGAGGAAGGCGTCCAACCCCAGC
TGCTGGGAACAATGGACGATAAACCGtgcagtaagtaagtaagtaactaA
AGTAAATTGACGCGAAGGGTTGGGGGTCAGAGTCGgtgacgctaagaaat
ttcaccaggAATATCGAGTTTTGAGACGTTTACTCCATGACAAAATgcta
ctttccatatttcttttcctccttttatatACCTAAAGTATTTGTTTGCT
TCGCTATtttatagaacaattttaaccaaaacaaacggcccgatgtTTAT
TTCTTGTGTTCTGCGCGGCCCTTGAATTTTGCCAACGATCTGTCTTTTTT
TTCGGTTTTCAAATTAGGGTCAATTTGatgttagtcgtgggaagaatcga
tatgtgagtgacacCTTAGGCGTATATAAACTTTTTCGAGCAGAAACTTC
TGTGATTATTGCAAATTTTAGCCTTTGATTTTCTTtagttttgtataaaa
aatgaatatattGTGGCAAAATCGACCTTGATATtgtgaacataaaatat
taggAAATTAATTCAAAGTAGAATGAAGGATCGCTTAGCCCAACTGCGAG
ATCTGCAGGTGCAGTCAGACCTTCCGCCTGAATATGAGGAGACAAACTTA
TCGGAAGAAGACAAAACAAACCCATTCCTAAATGACTTTTTCTCCCAGAT
CGAAGTTATACAACAAGACATCAGGGATATCCAAGATAATGTGCAAGAAA
TCAAGAAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGATAAG
ATGAAAGAGGAACTAGAGCAATTTATGGCTGATATCACCAGATCTGCAAA
CAGAGTCAAACAAATCTTGAAAGGTATGGAAAAGAGCATCAAGGACCAAG
AAAATAGCAATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATGCCAG
CATGCAGCATTGTCAAGGGAATTTGTGGAGGTGATGACAGAAtacaataa
aattcaaaacgacTACAGAGACAAATGTAAAAATCGTATCAAAAGACAAC
TTGAAATTACTAATACTGAGAAGTCGTATACTGATGAAGAGGTAGAGGAG
ATGATCGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAATCATTACAGA
CACACAACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCACAATG
ATATTATCAAGTTAGAAACTAGTATAAGGGAATTGCATGAAATGTTCACT
GACATGGCCATTCTTGTGCAAAGTCAGGGGGAGATGATCGATCGTATAGA
ATATAATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTTGACA
CCAAAAAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGaaaaaaattatg
attgcAATCTGTCTGGCTGTCatggttttgattttggcacTGATTATTTA
CTTTAGTGTAGCATAAAATCTCACTTGTGAACAATCTAGCTTTCACTTTT
GGCTGCATTGACATCATAATTATATGGATGGTAGCACAAACGCAGGCAGG
CCGCAGACAAATGGATACAGTCTGCAGTATAACATAAGGGGTCCCAATTT
TTTACATCTACAAAGATTTCGAACTAAATAGTTTGTAGTACACAATGTAT
TTACAAATGCTTTTATTTAGTGGAAAAGGGTAATACAGAAGAGATGTATT
GTATATTTTGATGGTACAATTTATATAATTGATGTTATGTATTACATGAT
ATTATGCTTCTATTGTGATATAAGTATAGTTCTCAAATTTTGTAACACCA
CATTTTCTAGCTTGCACCACCAATGAATATTAGAATGCACAAACTATGGA
AGGTAATAAGAAGTACATCAGAATGGTTGAGGATGATAACAACGATAAGC
ATTCTGTGTGACTTACAGTGATTCGTATACGTAATAATGATTTTGAACTA
CTATAGTTTTGAAACATACCGAACTTAGTGAGGGGTTGTGATCACAGATT
GGTATtaaaagcccgaaaggctagatgtcgtgcttttgctgaaaagtgtg
ctgtGGCTACGTATGAAATCCTAGCTAGGttacgtgacattacaatagaa
tttcagcgcttgaccaatcagtaGTTTCGCGCACTTTTTGTTGCCtgtga
tggcttaaagcacgacatctagcccttcgggctttttaTAAATCTGAGGT
TGTGATTACAAAAGGTAAGGTTATGAAAGATTATGTGCTCCACTGTAGGC
TAAATGTAATCAGCATCTAGTAATAAGTATAAGCACTCTTACAAtcgcaa
tttttgaaaaactgacaTTACAACAGACGATTAGgggagtcaacattgag
aaaacaCGTAGATTTTTTTTGTAGTCAGTATAGTTGTAACAtactttttt
ttctcattttactTGACTTTAATAATAGCTATCATTAATCTCCTCTATAA
AAGAACAgtaatgactttttttttattttaacatattttttctGATTATC
CCCATAATTATTATATTCTATTGTTCTAGAGCACCAAATTTCTATACCCA
CCGCATTTTCACGAGTAGAATTTCATTCAATTTATTGATCTTTCATGTTT
TGACATAGTGATACCGTAACTTAGTGTAATGCCGACGTACCTTGTTTAAT
TCCGTCATAGCAATTATCTGGTCCTTTAAATGTTTATGAATAAATCCTTC
TGAGAAGCTGTTAAAGAAATCACTCTAACTATTCTAAAtactttgcagac
cagataaCGGCTATgacggaattagacaaggtatgtcgaCATAAGACGAA
TTCACGGTAAGTCTCAGTAAGGACAGTGGAGATTTTAACTAGATTTTTGT
AAGCCTTTTTCCATACCTTATCTGTATTCGATCTTTTCATCTATTGGAAT
AAACACGAGCTTTTATTATTAACCTGATCAACCTATTTAGTTTTAGTAAT
TACAATTACATGTACTAGACATTTTGATTGATAGCGGAAATACCAGCAGC
TTTACTCTTCAAGTTACTCAATAACGACTATAggagatttgaaattttat
tttgtagatTCAATATAATGTATATTTTTCACATGAGAGAAGATTGAGGG
AAAGGCTATGTGATTCCAACCAAAagacccctgtgtcacagacccgctga
ggCCTTAGCCCCagtggaaaatttggcaaaaatttcgttcccggtgggaa
aaatttcctaaattccagccccactgagaaattgactttgatttcatccc
cattcgaaattcatcgTTCATGCAAATTGcaatccaaaaccatccccact
ggatttggaacaaaataaatttttatccccgctgtaagaaaaagtttcac
cggggctgtgagacagtggTGTACCAAACAAGACAGCCAAATCTTTCTTG
ACGATCTTACTTCTCTTTTCTCTAATCTCTCATGGGAGTAATCAATgtaa
taattgtttttttgtatgTTTACTATATTATTGTTTATTATGAATTTATG
AAGAatactttttcgttttttgtttgttttctttgatttacaAAATTGAA
AGAGATTGAGGGGAAAGCTAAACATTCTTAATTAAAGAGAATtgactaca
tgtttttttttctataagcataacgtttataagcatatacaggCTCAGTT
ATTGGTTCCCT
Run BLAST on NCBI

transcript from alignment at sc0000314:184650..191541+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018970 ID=TCONS_00018970|Name=TCONS_00018970|organism=Clytia hemisphaerica|type=transcript|length=6892bp|location=Sequence derived from alignment at sc0000314:184650..191541+ (Clytia hemisphaerica)
aatgtcgcgtttttttgcaaacttcaaaaagctgatttttgtctcgcttt
tgcaggactttagattaagtgcttgcgtgcagcatagggtacaaagtcca
aatatgcgtttcccgtaatttttgtatgaagagttaagtCTATACTGTCT
GACAGTCTActttaggggtcactcacatatcgattcttcccacaaCTAAA
AGCATTGCATTGCGTACGGCCATCAAGAGAGGAAGGCGTCCAACCCCAGC
TGCTGGGAACAATGGACGATAAACCGtgcagtaagtaagtaagtaactaA
AGTAAATTGACGCGAAGGGTTGGGGGTCAGAGTCGgtgacgctaagaaat
ttcaccaggAATATCGAGTTTTGAGACGTTTACTCCATGACAAAATgcta
ctttccatatttcttttcctccttttatatACCTAAAGTATTTGTTTGCT
TCGCTATtttatagaacaattttaaccaaaacaaacggcccgatgtTTAT
TTCTTGTGTTCTGCGCGGCCCTTGAATTTTGCCAACGATCTGTCTTTTTT
TTCGGTTTTCAAATTAGGGTCAATTTGatgttagtcgtgggaagaatcga
tatgtgagtgacacCTTAGGCGTATATAAACTTTTTCGAGCAGAAACTTC
TGTGATTATTGCAAATTTTAGCCTTTGATTTTCTTtagttttgtataaaa
aatgaatatattGTGGCAAAATCGACCTTGATATtgtgaacataaaatat
taggAAATTAATTCAAAGTAGAATGAAGGATCGCTTAGCCCAACTGCGAG
ATGTAAGTATGCTCAAACGGAGAATTAAAGTCGTTTTAATGAATCATAAG
TTGAAGAAATATGATGTTTATGAAATGTTATTATTTCTAtgtcaactttt
tttatcaaaaacaaatGATATAGTCTATGAGGAAACCTTTCACAAAATGA
GAATTCTTTTGCCATGGTAAGAATACTTAagcctcaaaatttcaaaaact
aagaTAATCCCAGACTGAATGAaagtttactggttcttatatatgTATTC
TCTgcaagaaaaaatctttcatgtTATTTGCTTTTATACACGATTTCACT
TTGTTTTTGTGAGAAAGGAGTGAAACCTTACTTTTTTTCATATCAACAGA
TAGGAATAGGTGGATTAGGCTCTACTGCTGCTACTAAGAgacatgatttt
ttttataagaacaatgaggttcaaaaaagcctgaaaataaTTAAGAACAA
ACCTCAGTCTGGAATGGCTGAATTTCAAGCAAATAAAGGGTCATAATAAT
ATAGACAGGgtataaagcctaaaatacatcaatttttctttaaaaataag
aacagcccaCCCTCAACAATTGATTTGGTTCTTGTAGAAAAACTATTACG
TTAAGATtatactttttcaaaatgttttacaaattttacatGCGATATAA
GGGGCTAGAATGGCGAGGTATTTTCTCATTTAAATGTACCATATATTGTA
TAATAATCCACCTATTCTTGACgatattgtaaaaaaattgactGGCAGAA
AAAACCAACTATTTTTACATCTGGCCTAATCTGTAGAAATTGTTCCTTTA
GTTTTGTATAAAAATGAATATAATGTTTGAAGCAGATTTCTTAGAAATTC
TATAGTTCAAATTGTTTAAACcaagattttgtttgaatttcagCTGCAGG
TGCAGTCAGACCTTCCGCCTGAATATGAGGAGACAAACTTATCGGAAGAA
GACAAAACAAACCCATTCCTAAATGACTTTTTCTCCCAGGTAATAATTGT
GTACATATCCCCATACTTGCTGATATAGTGTTTTGAGAGATTTCATATAT
ACTGCTCTTCTCACAAAATATTTGGATGTCAAACTCTTAGTAAGTAATAC
CAACTTTCTAATTTTTCacacaattttcaataaattctcTCTCTAAGATC
GAAGTTATACAACAAGACATCAGGGATATCCAAGATAATGTGCAAGAAAT
CAAGAAGAAACAGAGTGCTATCCTCTCTGCTCCTCAATCAGGGGATAAGA
TGAAAGAGGAACTAGAGCAATTTATGGCTGATATCACCAGATCTGCAAAC
AGAGTCAAACAAATCTTGAAAGGTTAggcaaaaaagaattttaataattt
tatctttttctttttatgaaaatcaacactgtttgatttgaagttttcat
TCATAACATTGTTATAGAAAAATGATGTTTCAACAGTAAAGAATCGTTGG
TTATATTTATCAATAGGTATGGAAAAGAGCATCAAGGACCAAGAAAATAG
CAATCAAGGAAATTTCGCTGACATCAGAATCAAGAAATGCCAGGTACAAT
TTTGCTTACTTAAGTGTGTTAAGTAACTTGAAAAGGGTgttcaattttcg
attttcaagacttttaaaattaaattttttcagaaTCTTAATGCTAATTT
AGGATCCTATATTAAGTGAAAGAAAGGTgatttattgccgacccaaaaaa
aaaTACCAGCGTATTgggattggtcgagagcatccaAATATTTaagatat
ttcatatttctctagcTTTTTTTCTTCCACATAGCATGCAGCATTGTCAA
GGGAATTTGTGGAGGTGATGACAGAAtacaataaaattcaaaacgacTAC
AGAGACAAATGTAAAAATCGTATCAAAAGACAACTTGAAATTACTAATAG
TAAGTCTGATGATTTGGTaatgaactttttaaaaacttttacacTGGGAA
GAATTCGAACAACTAGTTATTCGAAATAAGTATAGCTCAAGaattttctt
tactcaaaattttgaatggcTCAAAAAGTTGTGAGTGGTTTTAATCAGCC
CAGATAAAAAGTTTAGCTGCAAAATGTTTTGGATAATAAACAAGGCTGGA
TAAGCATATTCATGCCGTGGATAAAAATACTGATTCCAAAAGTTTGGTAA
TAACAGGTTTGGATAAAGGACACGGATGGATTAAGTGTATTCTCACACCA
TGTTGGATCGAAAAAGGATCAGATTAGTATACCTCTTTTTCAGAAaagta
attttcttttttcttttaacagCTGAGAAGTCGTATACTGATGAAGAGGT
AGAGGAGATGATCGAGAGTAAGAACCCTGCTATCTTCACTCAAGGAGTAA
GTGTCTTTAGATCTTCATACTTTTTCTAGGTGACGTCTAGTTAGCATAGA
CTGTATTGTGTAGtatctttaaaagtttttaatatcATACCAAAGACCTT
AAAAATGGTACTTGAATGTCTCTCTGCTTTAAACACTGCAGTTAAAGATT
AGTTAAAGAGAATgttcaagggtaagtggagaaatcaaGGGTAGAGTGGA
AAAGGGAGCCTGCCCATCCCTCCCCCACCCCAACAACGGTCGCACATTAC
ACTCATTTAATATCTTAGATTAACTtcagtttgaaatattttttgaagga
CTTATTTTGCAGTAATTCTGGTAACACTACTtttccttttcaaatttcat
cttACTCATTGACAATGTTTTCTTGTCTTTATTATTTTCAGATCATTACA
GACACACAACAGGCTAAACAATCACTTCGTGAAATTGAAGCCCGTCACAA
TGATATTATCAAGTTAGAAACTAGTATAAGGGTATGTTATTGGTATTGTT
ACTCATCTATCACTCTTCTTTTTTCTGTCAAATTATAAaacacctttttt
caaaaaccaaaaaagaaattaaatataATGATAAGTGCATACGTGATGCT
TACATGTCTTAActactttttttgtttactcgCACTAACTTTAATCTTCT
AAACTCTGTGTTTTCATTTCCAGGAATTGCATGAAATGTTCACTGACATG
GCCATTCTTGTGCAAAGTCAGGTATCCCTTTATTTTATCCTATTTTAGCA
AGAATaagttatatatatatatattaattATACTTTAATCATTCACTTTT
TACACGAAAAGCCTGAATAGTCATAATTGAGAGATATAGTCCTTCCGATA
AACGGAACAGGCCCTATCCAGGACAACATTCGCTATCATAGGATGGGGAA
ATCACTGCGCTTACCTGACTCAAGGGAACTTTGTGCTTGTGATAAATGGA
GCAAACAACTCGGGGAGGACAGCTTCTCGTTGCATGGTCAAACCCTGAAA
AGTATTAGCAACCATAAAGCCAGACATCTTAATTACTGTCTAACGTTCTG
TCTTATTTTGATTGCAATTTGTTTACTTTAGGGGGAGATGATCGATCGTA
TAGAATATAATGTGGAGCAAGCGGCAGAGTACGTACAACGAGCTGTTGTT
GACACCAAAAAAGCTGTTCGTTATCAGAGTAAAGCTAGAAGGGTACGTTT
CATAAATGTTTTATTCTATGGTGATGGTCTTTGAAACAACATAGCAGCTG
CTATGTGGACATCCTCTTAGAAATTCATTTTAAAGATGCTTATAAAAGTA
GTAGCAGCATGTGATGTAAAGACAGCGGCAAAATCCATTTTATTCCTAAT
TGcttttcttggatttttttattGACTCGAAACTATCCATCTTCATCTAT
CTATTAATTCGATATGTAttcgatattttattttttattttcatttctta
tcttttttcttccttttagaaaaaaattatgattgcAATCTGTCTGGCTG
TCatggttttgattttggcacTGATTATTTACTTTAGTGTAGCATAAAAT
CTCACTTGTGAACAATCTAGCTTTCACTTTTGGCTGCATTGACATCATAA
TTATATGGATGGTAGCACAAACGCAGGCAGGCCGCAGACAAATGGATACA
GTCTGCAGTATAACATAAGGGGTCCCAATTTTTTACATCTACAAAGATTT
CGAACTAAATAGTTTGTAGTACACAATGTATTTACAAATGCTTTTATTTA
GTGGAAAAGGGTAATACAGAAGAGATGTATTGTATATTTTGATGGTACAA
TTTATATAATTGATGTTATGTATTACATGATATTATGCTTCTATTGTGAT
ATAAGTATAGTTCTCAAATTTTGTAACACCACATTTTCTAGCTTGCACCA
CCAATGAATATTAGAATGCACAAACTATGGAAGGTAATAAGAAGTACATC
AGAATGGTTGAGGATGATAACAACGATAAGCATTCTGTGTGACTTACAGT
GATTCGTATACGTAATAATGATTTTGAACTACTATAGTTTTGAAACATAC
CGAACTTAGTGAGGGGTTGTGATCACAGATTGGTATtaaaagcccgaaag
gctagatgtcgtgcttttgctgaaaagtgtgctgtGGCTACGTATGAAAT
CCTAGCTAGGttacgtgacattacaatagaatttcagcgcttgaccaatc
agtaGTTTCGCGCACTTTTTGTTGCCtgtgatggcttaaagcacgacatc
tagcccttcgggctttttaTAAATCTGAGGTTGTGATTACAAAAGGTAAG
GTTATGAAAGATTATGTGCTCCACTGTAGGCTAAATGTAATCAGCATCTA
GTAATAAGTATAAGCACTCTTACAAtcgcaatttttgaaaaactgacaTT
ACAACAGACGATTAGgggagtcaacattgagaaaacaCGTAGATTTTTTT
TGTAGTCAGTATAGTTGTAACAtacttttttttctcattttactTGACTT
TAATAATAGCTATCATTAATCTCCTCTATAAAAGAACAgtaatgactttt
tttttattttaacatattttttctGATTATCCCCATAATTATTATATTCT
ATTGTTCTAGAGCACCAAATTTCTATACCCACCGCATTTTCACGAGTAGA
ATTTCATTCAATTTATTGATCTTTCATGTTTTGACATAGTGATACCGTAA
CTTAGTGTAATGCCGACGTACCTTGTTTAATTCCGTCATAGCAATTATCT
GGTCCTTTAAATGTTTATGAATAAATCCTTCTGAGAAGCTGTTAAAGAAA
TCACTCTAACTATTCTAAAtactttgcagaccagataaCGGCTATgacgg
aattagacaaggtatgtcgaCATAAGACGAATTCACGGTAAGTCTCAGTA
AGGACAGTGGAGATTTTAACTAGATTTTTGTAAGCCTTTTTCCATACCTT
ATCTGTATTCGATCTTTTCATCTATTGGAATAAACACGAGCTTTTATTAT
TAACCTGATCAACCTATTTAGTTTTAGTAATTACAATTACATGTACTAGA
CATTTTGATTGATAGCGGAAATACCAGCAGCTTTACTCTTCAAGTTACTC
AATAACGACTATAggagatttgaaattttattttgtagatTCAATATAAT
GTATATTTTTCACATGAGAGAAGATTGAGGGAAAGGCTATGTGATTCCAA
CCAAAagacccctgtgtcacagacccgctgaggCCTTAGCCCCagtggaa
aatttggcaaaaatttcgttcccggtgggaaaaatttcctaaattccagc
cccactgagaaattgactttgatttcatccccattcgaaattcatcgTTC
ATGCAAATTGcaatccaaaaccatccccactggatttggaacaaaataaa
tttttatccccgctgtaagaaaaagtttcaccggggctgtgagacagtgg
TGTACCAAACAAGACAGCCAAATCTTTCTTGACGATCTTACTTCTCTTTT
CTCTAATCTCTCATGGGAGTAATCAATgtaataattgtttttttgtatgT
TTACTATATTATTGTTTATTATGAATTTATGAAGAatactttttcgtttt
ttgtttgttttctttgatttacaAAATTGAAAGAGATTGAGGGGAAAGCT
AAACATTCTTAATTAAAGAGAATtgactacatgtttttttttctataagc
ataacgtttataagcatatacaggCTCAGTTATTGGTTCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010637XLOC_010637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018970-exon-sc0000314-1491911889:184650..185451TCONS_00018970-exon-sc0000314-1491911889:184650..185451Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:184650..185451TCONS_00018970-exon-sc0000314-1510915933:184650..185451Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:184650..185451TCONS_00018970-exon-sc0000314-1575043694:184650..185451Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:186343..186438TCONS_00018970-exon-sc0000314-1491911889:186343..186438Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:186343..186438TCONS_00018970-exon-sc0000314-1510915933:186343..186438Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:186343..186438TCONS_00018970-exon-sc0000314-1575043694:186343..186438Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:186597..186771TCONS_00018970-exon-sc0000314-1491911889:186597..186771Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:186597..186771TCONS_00018970-exon-sc0000314-1510915933:186597..186771Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:186597..186771TCONS_00018970-exon-sc0000314-1575043694:186597..186771Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:186916..186992TCONS_00018970-exon-sc0000314-1491911889:186916..186992Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:186916..186992TCONS_00018970-exon-sc0000314-1510915933:186916..186992Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:186916..186992TCONS_00018970-exon-sc0000314-1575043694:186916..186992Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:187234..187348TCONS_00018970-exon-sc0000314-1491911889:187234..187348Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:187234..187348TCONS_00018970-exon-sc0000314-1510915933:187234..187348Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:187234..187348TCONS_00018970-exon-sc0000314-1575043694:187234..187348Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:187722..187795TCONS_00018970-exon-sc0000314-1491911889:187722..187795Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:187722..187795TCONS_00018970-exon-sc0000314-1510915933:187722..187795Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:187722..187795TCONS_00018970-exon-sc0000314-1575043694:187722..187795Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:188191..188280TCONS_00018970-exon-sc0000314-1491911889:188191..188280Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:188191..188280TCONS_00018970-exon-sc0000314-1510915933:188191..188280Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:188191..188280TCONS_00018970-exon-sc0000314-1575043694:188191..188280Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:188473..188520TCONS_00018970-exon-sc0000314-1491911889:188473..188520Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:188473..188520TCONS_00018970-exon-sc0000314-1510915933:188473..188520Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:188473..188520TCONS_00018970-exon-sc0000314-1575043694:188473..188520Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:188881..188991TCONS_00018970-exon-sc0000314-1491911889:188881..188991Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:188881..188991TCONS_00018970-exon-sc0000314-1510915933:188881..188991Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:188881..188991TCONS_00018970-exon-sc0000314-1575043694:188881..188991Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1491911889:189269..191541TCONS_00018970-exon-sc0000314-1491911889:189269..191541Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1510915933:189269..191541TCONS_00018970-exon-sc0000314-1510915933:189269..191541Clytia hemisphaericaexon
TCONS_00018970-exon-sc0000314-1575043694:189269..191541TCONS_00018970-exon-sc0000314-1575043694:189269..191541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000314supercontigsc0000314:184650..191541 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.25192	3.07782	2.81802	3.26641	16.42	16.5672	16.8432	17.7366	5.47102	6.58344	4.87055	4.97399	4.35779	5.5699	2.61174	2.31707	4.79193	4.98697	3.93248	3.95883	6.74012	7.0138	3.24017	3.99403	10.1432	12.4714	6.21239	5.3243	5.81715	6.5611
Blast
[Close]
BLAST of TCONS_00018970 vs. Swiss-Prot (Human)
Match: STX1B (Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.446e-89
Identity = 154/276 (55.80%), Postives = 208/276 (75.36%), Query Frame = 2 
Query:  773 MKDRLAQLRDLQVQSDLPPEYEETNLSEEDKTNPFLNDFFSQIEVIQQDIRDIQDNVQEIKKKQSAILSAPQSGDKMKEELEQFMADITRSANRVKQILKGMEKSIKDQENSNQGNFADIRIKKCQHAALSREFVEVMTEYNKIQNDYRDKCKNRIKRQLEITNTEKSYTDEEVEEMIESKNPAIFTQGIITDTQQAKQSLREIEARHNDIIKLETSIRELHEMFTDMAILVQSQGEMIDRIEYNVEQAAEYVQRAVVDTKKAVRYQSKARRKKIM 1600
            MKDR  +LR  +   D      E  +   D+ + F+++FF Q+E I+  I  + ++V+++KK+ SAIL+AP   +K K+ELE   ADI ++AN+V+  LK +E+SI+ +E  N+ + AD+RI+K QH+ LSR+FVEVMTEYN  Q+ YRD+CK+RI+RQLEIT   ++ T+EE+E+M+ES   AIFT  I  D+Q  KQ+L EIE RHN+IIKLETSIRELH+MF DMA+LV+SQGEMIDRIEYNVE + +YV+RAV DTKKAV+YQSKARRKKIM
Sbjct:    1 MKDRTQELRSAKDSDD------EEEVVHVDR-DHFMDEFFEQVEEIRGCIEKLSEDVEQVKKQHSAILAAPNPDEKTKQELEDLTADIKKTANKVRSKLKAIEQSIEQEEGLNRSS-ADLRIRKTQHSTLSRKFVEVMTEYNATQSKYRDRCKDRIQRQLEITG--RTTTNEELEDMLESGKLAIFTDDIKMDSQMTKQALNEIETRHNEIIKLETSIRELHDMFVDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIM 266
The following BLAST results are available for this feature:
BLAST of TCONS_00018970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STX1B1.446e-8955.80Syntaxin-1B OS=Homo sapiens GN=STX1B PE=1 SV=1[more]
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