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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018967 ID=TCONS_00018967|Name=TCONS_00018967|organism=Clytia hemisphaerica|type=transcript|length=849bp
TCAGTTATTAGATgataatcaaaaataaaacaaaatatgtCGTTATCAAA
AACTTTCTCTGATTCAAGAATTTATGTTGGTAATTTGCCACAATTTGTGC
GTCAAAGAGATTTGGAGGATCATTTTGATAGATATGGTAAAGTGCGGGCT
GTTGACATCCACAGTAGATTCGATCCTGCATTTGCTTTCATAGAGTTTGA
TGATTCAAGAGATGCAGAGGATGCAGTTTACGGAGAAGATGGAAAACGTT
TTGACGGCAACAGAATCAAAGTCCAATTCCCAAGAGGCACACCAAGACAG
GCTGGAGCAAGTCGCTCTGGTCGAAGTAGTTACACTAGAGGTCGACCATC
AGGCGAAAGGCGTGGCCCACCAGAACGGACCGATCATCGTATCACCGTCT
CTGGTCTACCTGCATCAGGCAGTTGGCAAGATTTGAAAGATCACATGCGA
GAAGCTGGCGAGGTAGTGTATGCTGATGTTTACAAGGATGGCACTGCTGT
TTGCGAGTTCAGAAGTTATGATGATATGAAATGGGCCATCAAAAATCTCG
ACGACACCAAATTCAAATCACACGAGCTGGGAACCATTCTCTCAGTTTAT
ACATACATACATCCCATCACCTGAGGGAGCTGTTTCCTGGTGCATTCTTA
GGCAAACAAACAACCCAGGATGCTTTGCAACTAGACAAACGATTATTCCC
AGAAGGCCATAGTATTTGGAGCCTCCACCTTTGCAATCAACTCAAGGAGG
ATGCTTAAGGAACTATCTAACCAAATTGTCGTAAGGTTGATGGACCAAAC
CACCTACCCAAACTGTTCCTATTCATTGATGCCTGATAGCCTTTTTGCG Run BLAST on NCBI transcript from alignment at sc0000314:128394..129844+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018967 ID=TCONS_00018967|Name=TCONS_00018967|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at sc0000314:128394..129844+ (Clytia hemisphaerica)
TCAGTTATTAGATgataatcaaaaataaaacaaaatatgtCGTTATCAAA
AACTTTCTCTGATTCAAGAATTTATGTTGGTAATTTGCCACAATTTGTGC
GTCAAAGAGATTTGGAGGATCATTTTGATAGATATGGTAAAGTGCGGGCT
GTTGACATCCACAGTAGATTCGATCCTGCATTTGCTTTCATAGAGTTTGA
TGATTCAAGGTAAGCATGATCGTTAAATCCAAAAATTTAGGCAATATAGG
TTCAGGTGTTGCGCTGTTTGCCATTAGTCatcattttttattgaaacgaA
CAATGTTGAAATTATTTTAATCATAAAACTTGTGACCAAGCCTTGACCAT
TCTTTAAATCAGTGGGTAGGTCATGGGTCTTCGCCAACCAGTTTGCACTG
TGTTGGATTAGTCACAGATAAAACTTGCTATGAACACATTATAAACACCT
TATCACAGGACAGGGTAGTTTCTCAGTTACGAAAACAAGTTATTGATTGA
ATATAACTTTCCTTCTTTGGTTTCACTTTCAGAGATGCAGAGGATGCAGT
TTACGGAGAAGATGGAAAACGTTTTGACGGCAACAGAATCAAAGTCCAAT
TCCCAAGAGGCACACCAAGACAGGCTGGAGCAAGTCGCTCTGGTCGAAGT
AGTTACACTAGAGGTCGACCATCAGGCGAAAGGCGTGGCCCACCAGAACG
GACCGATCATCGTATCACCGTCTCTGGTCTACCTGCATCAGGCAGTTGGC
AAGATTTGAAAGATCACATGCGAGAAGCTGGCGAGGTAGTGTATGCTGAT
GTTTACAAGGATGGCACTGCTGTTTGCGAGTTCAGAAGTTATGATGATAT
GAAATGGGCCATCAAAAATCTCGACGACACCAAATTCAAATCACACGAGG
TAATTTAGAAATTGGGTCGAAACTTTAGTCTCGaccccgggttttttttt
ttttatattactGATAATATTGACTGTATGTTTCAAATAGTGTCCATGAC
CTCTTTTTCCtagtttgaaatgttttttttgctgaaaaaatacTTCTAAT
AATTTAAACAATCTGTTGTCCTATTAAATACCTTACACTTGACTCATTTG
AGTCCGAATTATCGAATGTTTGGCCAAAGTCAAATAGAAATTGTATTAAA
GTGTACTGTATTTTCTTCCTCACTCTAGCTGGGAACCATTCTCTCAGTTT
ATACATACATACATCCCATCACCTGAGGGAGCTGTTTCCTGGTGCATTCT
TAGGCAAACAAACAACCCAGGATGCTTTGCAACTAGACAAACGATTATTC
CCAGAAGGCCATAGTATTTGGAGCCTCCACCTTTGCAATCAACTCAAGGA
GGATGCTTAAGGAACTATCTAACCAAATTGTCGTAAGGTTGATGGACCAA
ACCACCTACCCAAACTGTTCCTATTCATTGATGCCTGATAGCCTTTTTGC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018967-exon-sc0000314-1491911889:128394..128602 | TCONS_00018967-exon-sc0000314-1491911889:128394..128602 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1510915933:128394..128602 | TCONS_00018967-exon-sc0000314-1510915933:128394..128602 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1575043694:128394..128602 | TCONS_00018967-exon-sc0000314-1575043694:128394..128602 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1491911889:128926..129292 | TCONS_00018967-exon-sc0000314-1491911889:128926..129292 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1510915933:128926..129292 | TCONS_00018967-exon-sc0000314-1510915933:128926..129292 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1575043694:128926..129292 | TCONS_00018967-exon-sc0000314-1575043694:128926..129292 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1491911889:129572..129844 | TCONS_00018967-exon-sc0000314-1491911889:129572..129844 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1510915933:129572..129844 | TCONS_00018967-exon-sc0000314-1510915933:129572..129844 | Clytia hemisphaerica | exon |
| TCONS_00018967-exon-sc0000314-1575043694:129572..129844 | TCONS_00018967-exon-sc0000314-1575043694:129572..129844 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000314 | supercontig | sc0000314:128394..129844 + |
Blast
BLAST of TCONS_00018967 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2) HSP 1 Score: 169.859 bits (429), Expect = 1.314e-50 Identity = 96/174 (55.17%), Postives = 123/174 (70.69%), Query Frame = 1
Query: 58 SDSRIYVGNLPQFVRQRDLEDHFDRYGKVRAVDIHSR-FDPAFAFIEFDDSRDAEDAVYGEDGKRFDGNRIKVQFPRGTPRQAXXXXXXXXXXXXXXXXXXXXXXXXXTDHRITVSGLPASGSWQDLKDHMREAGEVVYADVYKDGTAVCEFRSYDDMKWAIKNLDDTKFKSHE 576
+D RIYVGNLP +R +D+ED F +YG +R +D+ +R P FAF+EF+D RDAEDAVYG DG +DG R++V+FPR G R G G P G P R+++R+ VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF +DM +A++ LD+TKF+SHE
Sbjct: 14 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR---SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 184
The following BLAST results are available for this feature:
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