TCONS_00018961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018961
Unique NameTCONS_00018961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018961 ID=TCONS_00018961|Name=TCONS_00018961|organism=Clytia hemisphaerica|type=transcript|length=542bp
CGGATGTCGGATGTTGAAACAGAcagtgtttttgttttttttgtatccAA
TTTAAGATACTCTCCTAAGTAGGAGAGACTGTAGCAGTTATCCTAATTTC
TAATAGTCCTTGACTGTCTTTTATTTGTTTCGATTCGTGATCCTAGGGTG
GTGTAgacttttttttcatcttcagacAGAGAGAAGAAAGCAGCAGGATG
CGCAGATCTAGTTCTAGTCATATTTCTAATTCTAGTAGAGTCAAGTTCTA
GATTGTTAACAAAGTGCTGTAAAAAATTATGAatgaaagaagaacttaaa
atcctaaatattttcattttgaagaattggtatgcgaaaaagtgaaacat
ggaaatgtttctatgtttggttttatttttgtacaaacccctgtaactat
gggcgtgcaccccgttgctaagatgttggcttaaagtcgaaaatgaaacc
actgaaaacaaaagtataaTTGACCCGCACACTCGGACCTGTAATCTTTT
GATATAGTTATAGGAGATTTTTAGTCTAAACTTTGGGGCGGg
Run BLAST on NCBI

transcript from alignment at sc0000313:294762..295303

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018961 ID=TCONS_00018961|Name=TCONS_00018961|organism=Clytia hemisphaerica|type=transcript|length=542bp|location=Sequence derived from alignment at sc0000313:294762..295303 (Clytia hemisphaerica)
cCCGCCCCAAAGTTTAGACTAAAAATCTCCTATAACTATATCAAAAGATT
ACAGGTCCGAGTGTGCGGGTCAAttatacttttgttttcagtggtttcat
tttcgactttaagccaacatcttagcaacggggtgcacgcccatagttac
aggggtttgtacaaaaataaaaccaaacatagaaacatttccatgtttca
ctttttcgcataccaattcttcaaaatgaaaatatttaggattttaagtt
cttctttcatTCATAATTTTTTACAGCACTTTGTTAACAATCTAGAACTT
GACTCTACTAGAATTAGAAATATGACTAGAACTAGATCTGCGCATCCTGC
TGCTTTCTTCTCTCTgtctgaagatgaaaaaaaagtcTACACCACCCTAG
GATCACGAATCGAAACAAATAAAAGACAGTCAAGGACTATTAGAAATTAG
GATAACTGCTACAGTCTCTCCTACTTAGGAGAGTATCTTAAATTggatac
aaaaaaaacaaaaacactgTCTGTTTCAACATCCGACATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010631XLOC_010631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018961-exon-sc0000313-1491911889:294762..295303TCONS_00018961-exon-sc0000313-1491911889:294762..295303Clytia hemisphaericaexon
TCONS_00018961-exon-sc0000313-1510915933:294762..295303TCONS_00018961-exon-sc0000313-1510915933:294762..295303Clytia hemisphaericaexon
TCONS_00018961-exon-sc0000313-1575043694:294762..295303TCONS_00018961-exon-sc0000313-1575043694:294762..295303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:294762..295303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.639239	0.103893	0.126102	0.130007	0.574699	0.113534	0.136974	0.512932	0.089779	0.222412	0.107939	0.212865	0.212569	0.367925	0.362981	0.389534	0.079979	0	0.339762	0.237025	0.424754	0.314525	0	0.222116	0.457548	0.204175	0.146087	0.155908	0.473003	0.361437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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