TCONS_00018959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018959
Unique NameTCONS_00018959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018959 ID=TCONS_00018959|Name=TCONS_00018959|organism=Clytia hemisphaerica|type=transcript|length=414bp
TTCTTGGTGGACACCCTTCTGTTACATTCAAAACAGTGACCATTCAAAGG
TTCAACACTGGTATCCAAAACAGTGGACACACTCAGACCAAAAAAGATGT
CAATCATCATTGAGGAAATAGTGTAAATTATAACAAATCAATCAAAGAAA
TCAACATGGTCAGTATCTTCAAACATCCTCAACAAACTTCAACCAATAAG
AATAACGTGAAAGATCTTTTGATAGAGCAAAATGTTATCTCTAGTAATAT
CATTGAGGACTTCCCATATGATTATGACATAGAAGAGAtgttgaaatttg
aaatcaagCCTCTCACCGAGGAAATGGAAACTTTAAAATGTCGATATTTG
ACAATTCAAAAGGAACTAAAAATCATATTCCCTCAAGCCTACGaagaaca
attttcaaatcaat
Run BLAST on NCBI

transcript from alignment at sc0000313:263890..264303

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018959 ID=TCONS_00018959|Name=TCONS_00018959|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000313:263890..264303 (Clytia hemisphaerica)
attgatttgaaaattgttcttCGTAGGCTTGAGGGAATATGATTTTTAGT
TCCTTTTGAATTGTCAAATATCGACATTTTAAAGTTTCCATTTCCTCGGT
GAGAGGcttgatttcaaatttcaacaTCTCTTCTATGTCATAATCATATG
GGAAGTCCTCAATGATATTACTAGAGATAACATTTTGCTCTATCAAAAGA
TCTTTCACGTTATTCTTATTGGTTGAAGTTTGTTGAGGATGTTTGAAGAT
ACTGACCATGTTGATTTCTTTGATTGATTTGTTATAATTTACACTATTTC
CTCAATGATGATTGACATCTTTTTTGGTCTGAGTGTGTCCACTGTTTTGG
ATACCAGTGTTGAACCTTTGAATGGTCACTGTTTTGAATGTAACAGAAGG
GTGTCCACCAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010629XLOC_010629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018959-exon-sc0000313-1491911889:263890..264303TCONS_00018959-exon-sc0000313-1491911889:263890..264303Clytia hemisphaericaexon
TCONS_00018959-exon-sc0000313-1510915933:263890..264303TCONS_00018959-exon-sc0000313-1510915933:263890..264303Clytia hemisphaericaexon
TCONS_00018959-exon-sc0000313-1575043694:263890..264303TCONS_00018959-exon-sc0000313-1575043694:263890..264303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:263890..264303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.19186	6.18329	1.08208	1.34194	23.1678	15.3584	22.9804	22.4535	5.54177	7.52511	3.54342	5.30189	1.91954	1.79296	0.393082	0.210918	0.519668	0.266322	0.551907	1.34757	0.501979	0	0	0.902007	0.185809	1.72429	0.474605	0.253256	0.192086	0.391409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top