TCONS_00018958 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018958
Unique NameTCONS_00018958
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018958 ID=TCONS_00018958|Name=TCONS_00018958|organism=Clytia hemisphaerica|type=transcript|length=628bp
CTGAACTACTAATGAGATTCAGGCGCAAAAGAGATCTAACTGAATCAACC
Gacaacttccaaacttcaaccgacaacttccaaacttcaactgacaactt
ccaaacttcaaccgacaacttccaaacttcaaccgacaacttccaaactt
caaccGACAACCTCCAAAATTCAACCGacaacttccaaacttcaactgac
aacttccaaacttcaaccgacaacttccaaacttcaacTGACAACTTCCA
AATCTCAACCAAGTACCTACAAAATTCAACCATCAATTCTCATATCCCAA
ATGCCAGCAACATCAGATTCTTGTTTGTCAATCTCCAAAAGCAATTCCAC
TTGCTGGAAACATCCCATCCAATCGAAATACTCAAAACACCTCAACCTAT
CGAAATACTTGAAACATCTCAACAAATCAGCTTGCTCAAAGCACCTCATT
TAATCGACTTGATCGAATCATCTCAATCAATCGAATCGTTCGAATTGTCT
CACTCGTTCGAATCGTCTCACTCAATCGAATCGTGCGAATTGTATCACTC
AATCGAATCGTTCGAATCGTCTCACTCAATCGAATCGTTCGAATCGTCTC
ACTCAATCGAATCGCTCGAATCGTCTCA
Run BLAST on NCBI

protein sequence of TCONS_00018958-protein

>TCONS_00018958-protein ID=TCONS_00018958-protein|Name=TCONS_00018958-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
ELLMRFRRKRDLTESTDNFQTSTDNFQTSTDNFQTSTDNFQTSTDNFQTS
TDNLQNSTDNFQTSTDNFQTSTDNFQTSTDNFQISTKYLQNSTINSHIPN
ASNIRFLFVNLQKQFHLLETSHPIEILKTPQPIEILETSQQISLLKAPHL
IDLIESSQSIESFELSHSFESSHSIESCELYHSIESFESSHSIESFESSH
SIESLESS
Run BLAST on NCBI

transcript from alignment at sc0000313:263166..263793

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018958 ID=TCONS_00018958|Name=TCONS_00018958|organism=Clytia hemisphaerica|type=transcript|length=628bp|location=Sequence derived from alignment at sc0000313:263166..263793 (Clytia hemisphaerica)
TGAGACGATTCGAGCGATTCGATTGAGTGAGACGATTCGAACGATTCGAT
TGAGTGAGACGATTCGAACGATTCGATTGAGTGATACAATTCGCACGATT
CGATTGAGTGAGACGATTCGAACGAGTGAGACAATTCGAACGATTCGATT
GATTGAGATGATTCGATCAAGTCGATTAAATGAGGTGCTTTGAGCAAGCT
GATTTGTTGAGATGTTTCAAGTATTTCGATAGGTTGAGGTGTTTTGAGTA
TTTCGATTGGATGGGATGTTTCCAGCAAGTGGAATTGCTTTTGGAGATTG
ACAAACAAGAATCTGATGTTGCTGGCATTTGGGATATGAGAATTGATGGT
TGAATTTTGTAGGTACTTGGTTGAGATTTGGAAGTTGTCAgttgaagttt
ggaagttgtcggttgaagtttggaagttgtcagttgaagtttggaagttg
tCGGTTGAATTTTGGAGGTTGTCggttgaagtttggaagttgtcggttga
agtttggaagttgtcggttgaagtttggaagttgtcagttgaagtttgga
agttgtcggttgaagtttggaagttgtCGGTTGATTCAGTTAGATCTCTT
TTGCGCCTGAATCTCATTAGTAGTTCAG

Coding sequence (CDS) from alignment at sc0000313:263166..263793

>TCONS_00018958 ID=TCONS_00018958|Name=TCONS_00018958|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0000313:263166..263793 (Clytia hemisphaerica)
AGACGATTCGAGCGATTCGATTGAGTGAGACGATTCGAACGATTCGATTG
AGTGAGACGATTCGAACGATTCGATTGAGTGATACAATTCGCACGATTCG
ATTGAGTGAGACGATTCGAACGAGTGAGACAATTCGAACGATTCGATTGA
TTGAGATGATTCGATCAAGTCGATTAAATGAGGTGCTTTGAGCAAGCTGA
TTTGTTGAGATGTTTCAAGTATTTCGATAGGTTGAGGTGTTTTGAGTATT
TCGATTGGATGGGATGTTTCCAGCAAGTGGAATTGCTTTTGGAGATTGAC
AAACAAGAATCTGATGTTGCTGGCATTTGGGATATGAGAATTGATGGTTG
AATTTTGTAGGTACTTGGTTGAGATTTGGAAGTTGTCAgttgaagtttgg
aagttgtcggttgaagtttggaagttgtcagttgaagtttggaagttgtC
GGTTGAATTTTGGAGGTTGTCggttgaagtttggaagttgtcggttgaag
tttggaagttgtcggttgaagtttggaagttgtcagttgaagtttggaag
ttgtcggttgaagtttggaagttgtCGGTTGATTCAGTTAGATCTCTTTT
GCGCCTGAATCTCATTAGTAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010628XLOC_010628Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018958-proteinTCONS_00018958-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018958-exon-sc0000313-1491911889:263166..263793TCONS_00018958-exon-sc0000313-1491911889:263166..263793Clytia hemisphaericaexon
TCONS_00018958-exon-sc0000313-1510915933:263166..263793TCONS_00018958-exon-sc0000313-1510915933:263166..263793Clytia hemisphaericaexon
TCONS_00018958-exon-sc0000313-1575043694:263166..263793TCONS_00018958-exon-sc0000313-1575043694:263166..263793Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:263166..263793 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.83055	5.04662	2.48351	2.40033	7.95986	5.56617	6.97285	6.41484	6.542	4.40594	1.7869	3.44794	1.33356	1.43303	0.235232	0.300529	0.324793	0.610168	0.929137	0.725847	1.10909	0	0.440202	0.656561	0.56897	0.783779	0.178242	0.358138	0.739668	0.316405
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018958 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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