TCONS_00018808 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018808
Unique NameTCONS_00018808
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018808 ID=TCONS_00018808|Name=TCONS_00018808|organism=Clytia hemisphaerica|type=transcript|length=335bp
GGTTGGGTGGTTTCATTTGTAAACAACAATTAAGAAATCAATACTTTTAA
TACCAATCAAAcgaaaaaaacgaagaaaaagcaaagaaaaagctaattat
ggaaatgaattggtaatcaaattaaaaagaaaatagattaGTTTTTAAAT
CAATTGAATGACCAGttgAAAAATGTTTGGTGGTAGGTTGTTTGTGTTGT
TTTGTATCTTGTTTGTGGTGGCCCATGGAAAAAAGCTGAAAGGTATTATT
TATGGTGAAAGTTTTATCCCTTTGTATGACTGTTCCTCATTTGCAAAACC
AGAAGCAAATTGTACACAAAATTAGTTTGATTTCT
Run BLAST on NCBI

transcript from alignment at sc0000309:70921..71532+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018808 ID=TCONS_00018808|Name=TCONS_00018808|organism=Clytia hemisphaerica|type=transcript|length=612bp|location=Sequence derived from alignment at sc0000309:70921..71532+ (Clytia hemisphaerica)
GGTTGGGTGGTTTCATTTGTAAACAACAATTAAGAAATCAATACTTTTAA
TACCAATCAAAcgaaaaaaacgaagaaaaagcaaagaaaaagctaattat
ggaaatgaattggtaatcaaattaaaaagaaaatagattaGTTTTTAAAT
CAATTGAATGACCAGGTAACAATATTGTTCCATTGTCACTTTTTGGTCAA
AGTCTGACTTTTCCAAAGATTTCGAACGAAAAGTTTGaacattgttttgt
tttctttgaacAACACAAACACTGTTTACTGAGAGTCGTTTAAAAAGTTT
CATTTACCATTGGTAAACGAGCAAAAATTACTTGGAATCCATGGTTGGAA
TAATAATCTAACCTTCGGATGTTCGTTACTTTGGATAATCAGAATATCAC
CTTACTTACTTTTTacagtttctttttttctttctttttcagttgAAAAA
TGTTTGGTGGTAGGTTGTTTGTGTTGTTTTGTATCTTGTTTGTGGTGGCC
CATGGAAAAAAGCTGAAAGGTATTATTTATGGTGAAAGTTTTATCCCTTT
GTATGACTGTTCCTCATTTGCAAAACCAGAAGCAAATTGTACACAAAATT
AGTTTGATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010537XLOC_010537Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018808-exon-sc0000309-1491911889:70921..71085TCONS_00018808-exon-sc0000309-1491911889:70921..71085Clytia hemisphaericaexon
TCONS_00018808-exon-sc0000309-1510915933:70921..71085TCONS_00018808-exon-sc0000309-1510915933:70921..71085Clytia hemisphaericaexon
TCONS_00018808-exon-sc0000309-1575043694:70921..71085TCONS_00018808-exon-sc0000309-1575043694:70921..71085Clytia hemisphaericaexon
TCONS_00018808-exon-sc0000309-1491911889:71363..71532TCONS_00018808-exon-sc0000309-1491911889:71363..71532Clytia hemisphaericaexon
TCONS_00018808-exon-sc0000309-1510915933:71363..71532TCONS_00018808-exon-sc0000309-1510915933:71363..71532Clytia hemisphaericaexon
TCONS_00018808-exon-sc0000309-1575043694:71363..71532TCONS_00018808-exon-sc0000309-1575043694:71363..71532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000309supercontigsc0000309:70921..71532 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.844695	1.09828	1.27521	0.623797	0	0	6.15394	4.40566	4.74539	5.58404	8.5579	2.62529	3.93246	7.38992	4.4767	20.0746	8.4548	8.88254	0	0	5.44466	11.154	3.55121	7.63115	5.13917	8.36377	0.386082	0.412037	0.312515	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018808 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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