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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018806 ID=TCONS_00018806|Name=TCONS_00018806|organism=Clytia hemisphaerica|type=transcript|length=904bp
TCAATGTCCGAAAGACCGGAGAGTTATTACCCTTTTCGACGATCTTGGAA
AAGAAAGAGAACTATTAGAACTGTCCGTTAAATGTCCAAACATCCAAAAC
GGTTGTGAGTGGGTTGATTCTTTAAGGAAATTTGAGACACACGTGGCAAA
TTGTGGTTATGTGTTGTTGGGATGTACAAACTCGGACTGTTCGGAAAAAG
TGATCAAGAAAGAGTTTGAAGATCACGTAGAAAATAAATGTAAACATAGG
ATGgACCAAGTGATCACCTACAGACAATTCAAGTTGGTATTGGAAAAAAT
TCGTGATCTCGAGGAAAAAGTACAATCACAAGAAACGGTGATCAATGCGC
AAAACGAAAAGATTAAAATGATGGGAAAATTATCCGAATTCCATGCAGAA
AGAATTTCAGCGATGCGCATGCTTGCAGACAAGAATGAAAAGCGGTTGAA
CAATCAGCAAGCCGTGCACGAAGCTCGCTCACGCGTGAGTGAAGCTCGAC
AAGTGGAGCAAAGTGGAGAACTGAAGAAACTCGAATCCAAAATCAACAGT
TTGGAGTTTTCCAATGGACACAATGGGGGACATATCGTAGATCTGCAATC
CAAAGAAGATAAACGAGATGAAGAAATTgaatcttttgaaaagaaaatcg
aTATTCTTCACAAGAAATTCCACCCGAAATCCAAAATGTTGTTCAATGAT
TCCCATATTTGGAAAATCAACGCAGtcaaaaagaaaatggaaaaagcAGC
CAATTCAAGCGAAGAGGAATGTCTCGAAAAGTACTTCTACACATCACGAG
GATACAGAATTGAAGTCAACCTGTATTTGAACGGATGGGCAGATGCTAAA
GGAAAATATGTAAGTGTAGGTCTACGGCTAGTTAAAGGTTGCTTCGACGA
TGAA Run BLAST on NCBI protein sequence of TCONS_00018806-protein >TCONS_00018806-protein ID=TCONS_00018806-protein|Name=TCONS_00018806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
QCPKDRRVITLFDDLGKERELLELSVKCPNIQNGCEWVDSLRKFETHVAN
CGYVLLGCTNSDCSEKVIKKEFEDHVENKCKHRMDQVITYRQFKLVLEKI
RDLEEKVQSQETVINAQNEKIKMMGKLSEFHAERISAMRMLADKNEKRLN
NQQAVHEARSRVSEARQVEQSGELKKLESKINSLEFSNGHNGGHIVDLQS
KEDKRDEEIESFEKKIDILHKKFHPKSKMLFNDSHIWKINAVKKKMEKAA
NSSEEECLEKYFYTSRGYRIEVNLYLNGWADAKGKYVSVGLRLVKGCFDD
E Run BLAST on NCBI transcript from alignment at sc0000309:58419..61426+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018806 ID=TCONS_00018806|Name=TCONS_00018806|organism=Clytia hemisphaerica|type=transcript|length=3008bp|location=Sequence derived from alignment at sc0000309:58419..61426+ (Clytia hemisphaerica)
TCAATGTCCGAAAGACCGGAGAGTTATTACCGTAAGTCGTGCAATGCGAg
atttaaaaaggaaaaattataaGAACAGAATTCTCGATAttggtcgaagc
tcaaaaacaAACAATGAATGATTCCATCCTCAAAAATGGTTAAGAAAAGC
CCCTTTTGAACCATCAAGTGAATAAACCAAGTGTTCTTAGTATGGTTATT
GAGTCTGAATATCAACTGCTTTTCGTTTTCCCTACTCCTCCACTCCAAAG
TTTTTAGAGAATTACCATCAAATCTAATTAAGTCTGATTAAGTTCTTAAT
TTAATAAATGTATTTTCTTCAGCTTTTCGACGATCTTGGAAAAGAAAGAG
AACTATTAGAACTGTCCGTTAAATGTCCAAACATCCAAAACGGTTGTGAG
TGGGTTGATTCTTTAAGGAAATTTGAGGTAAGTTACAGATTAAGACATTG
TTAAGAAGTGATAAAAACATGAGACAATGTCAAAGACCGTCTTGTAGCCC
TAGAAGATCACTGAACTGCCCGCGTAAAATATCAACGCTATAGATCTTAA
TGTTTTTTAGATATACCTTAAAATTCAACTTCcactaagtaagtaagtct
gcaaccgcagtcggatgcgacccgaaggctcctctctCAATAGCTATCTA
ggtacccgaaggtaggggagggcgccactttttctccctggattgctcca
cttatcCTTGATCGTTCTCCTAATGCTGAGCATTAACCAGAgaagcatca
agtaccattttgggaatctttggtatgacccggctggatgttgaacccac
aaccttgcaaaccgagccggatgctctaccacggCACTACGGTTGCTCAC
CTTCCACTAGGGAAGTTTACTATATTAGATCTTGAAATTTTCCCCAATTA
CGACTTTCTAGACACACGTGGCAAATTGTGGTTATGTGTTGTTGGGATGT
ACAAACTCGGACTGTTCGGAAAAAGTGATCAAGAAAGAGTTTGAAGATCA
CGTAGAAAATAAATGTAAACATAGGATGGTGAGTCTATATATATCAAAAA
TCAATAGTAGGTTCAGATGCGTATTACTTCTCGGCTTTTACAGCAATAGC
CTATACTATGACGTCCGCGTTTTTTCTACCcaaaaacgagatgaaaaatc
ccggtttttagcgAGGTGCTCGCTATTACAGCAATGACAAGAACTTCCTA
TTTGCCTATTTGCCTCGTTGCTTTTTTGGCTATCTTTACCATGATTGAAC
TTAACCAAATCTTAGCACTTCTTGTAAATAAACTTACTATAATTGCAAAC
AATATAGTAAAAACCGCTTTACTAGCAAAGCAAAGTTTGAGATTTCCTCA
CAGTAAAAACTGCATCTAAAATCAGACTGGATGACGTTTTCATACCTAAT
TTCTGAGTCTAAACCAATAGTTTTAGAGAAATGAGGAGCTGAAACGGGTC
TTTTTCGGGAATTGATTACGAATTAATACTCTCATAATGGCAGGATAGTG
GCCACACAACCGTTAACAATGAATTAAAAGGAACTTTTTTCAAGgaactt
gaaatattttctctcaTTTTGTAAAGTTTTCATGGAATCTTGTAACACTT
TATTTGCAAATGGCATTCCATAGCATTTATAGCAAGTGGAACAAATAGGC
CCTTTCAGTATATAGAAGTTGatataaaaatattactctGGTAGGTActt
taggtgccaaataaacggggcccccgcttgttaatttttcgatttttttc
caaccccccggaccttattaggaccccccccgtttattaatttttgaaaa
aattcccagctaccaaaaggaaagttccttgttttactctaaaaagcctc
aATCTAGTCTATTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNccccccccccgtttatttggcacct
aagagtaaaggAATTGAGACATTTTATACCTCATGCTTTTATATCTTCAT
CTTTCTTGAAACAAAAACCCAGAGTGTGCAATTTAtgaatcttttctttt
ttgtcaggACCAAGTGATCACCTACAGACAATTCAAGTTGGTATTGGAAA
AAATTCGTGATCTCGAGGAAAAAGTACAATCACAAGAAACGGTGATCAAT
GCGCAAAACGAAAAGATTAAAATGATGGGAAAATTATCCGAATTCCATGC
AGAAAGAATTTCAGCGATGCGCATGCTTGCAGACAAGAATGAAAAGCGGT
TGAACAATCAGCAAGCCGTGCACGAAGCTCGCTCACGCGTGAGTGAAGCT
CGACAAGTGGAGCAAAGTGGAGAACTGAAGAAACTCGAATCCAAAATCAA
CAGTTTGGAGTTTTCCAATGGACACAATGGGGGACATATCGTAGATCTGC
AATCCAAAGAAGATAAACGAGATGAAGAAATTgaatcttttgaaaagaaa
atcgaTATTCTTCACAAGAAATTCCACCCGAAATCCAAAATGTTGTTCAA
TGATTCCCATATTTGGAAAATCAACGCAGtcaaaaagaaaatggaaaaag
cAGCCAATTCAAGCGAAGAGGAATGTCTCGAAAAGTACTTCTACACATCA
CGAGGATACAGAATTGAAGTCAACCTGTATTTGAACGGATGGGCAGATGC
TAAAGGAAAATATGTAAGTGTAGGTCTACGGCTAGTTAAAGGTTGCTTCG
ACGATGAA Coding sequence (CDS) from alignment at sc0000309:58419..61426+ >TCONS_00018806 ID=TCONS_00018806|Name=TCONS_00018806|organism=Clytia hemisphaerica|type=CDS|length=3612bp|location=Sequence derived from alignment at sc0000309:58419..61426+ (Clytia hemisphaerica)
CAATGTCCGAAAGACCGGAGAGTTATTACCCTTTTCGACGATCTTGGAAA
AGAAAGAGAACTATTAGAACTGTCCGTTAAATGTCCAAACATCCAAAACG
GTTGTGAGTGGGTTGATTCTTTAAGGAAATTTGAGACACACGTGGCAAAT
TGTGGTTATGTGTTGTTGGGATGTACAAACTCGGACTGTTCGGAAAAAGT
GATCAAGAAAGAGTTTGAAGATCACGTAGAAAATAAATGTAAACATAGGA
TGgACCAAGTGATCACCTACAGACAATTCAAGTTGGTATTGGAAAAAATT
CGTGATCTCGAGGAAAAAGTACAATCACAAGAAACGGTGATCAATGCGCA
AAACGAAAAGATTAAAATGATGGGAAAATTATCCGAATTCCATGCAGAAA
GAATTTCAGCGATGCGCATGCTTGCAGACAAGAATGAAAAGCGGTTGAAC
AATCAGCAAGCCGTGCACGAAGCTCGCTCACGCGTGAGTGAAGCTCGACA
AGTGGAGCAAAGTGGAGAACTGAAGAAACTCGAATCCAAAATCAACAGTT
TGGAGTTTTCCAATGGACACAATGGGGGACATATCGTAGATCTGCAATCC
AAAGAAGATAAACGAGATGAAGAAATTgaatcttttgaaaagaaaatcga
TATTCTTCACAAGAAATTCCACCCGAAATCCAAAATGTTGTTCAATGATT
CCCATATTTGGAAAATCAACGCAGtcaaaaagaaaatggaaaaagcAGCC
AATTCAAGCGAAGAGGAATGTCTCGAAAAGTACTTCTACACATCACGAGG
ATACAGAATTGAAGTCAACCTGTATTTGAACGGATGGGCAGATGCTAAAG
GAAAATATGTAAGTGTAGGTCTACGGCTAGTTAAAGGTTGCTTCGACGAT
GAACAATGTCCGAAAGACCGGAGAGTTATTACCCTTTTCGACGATCTTGG
AAAAGAAAGAGAACTATTAGAACTGTCCGTTAAATGTCCAAACATCCAAA
ACGGTTGTGAGTGGGTTGATTCTTTAAGGAAATTTGAGACACACGTGGCA
AATTGTGGTTATGTGTTGTTGGGATGTACAAACTCGGACTGTTCGGAAAA
AGTGATCAAGAAAGAGTTTGAAGATCACGTAGAAAATAAATGTAAACATA
GGATGgACCAAGTGATCACCTACAGACAATTCAAGTTGGTATTGGAAAAA
ATTCGTGATCTCGAGGAAAAAGTACAATCACAAGAAACGGTGATCAATGC
GCAAAACGAAAAGATTAAAATGATGGGAAAATTATCCGAATTCCATGCAG
AAAGAATTTCAGCGATGCGCATGCTTGCAGACAAGAATGAAAAGCGGTTG
AACAATCAGCAAGCCGTGCACGAAGCTCGCTCACGCGTGAGTGAAGCTCG
ACAAGTGGAGCAAAGTGGAGAACTGAAGAAACTCGAATCCAAAATCAACA
GTTTGGAGTTTTCCAATGGACACAATGGGGGACATATCGTAGATCTGCAA
TCCAAAGAAGATAAACGAGATGAAGAAATTgaatcttttgaaaagaaaat
cgaTATTCTTCACAAGAAATTCCACCCGAAATCCAAAATGTTGTTCAATG
ATTCCCATATTTGGAAAATCAACGCAGtcaaaaagaaaatggaaaaagcA
GCCAATTCAAGCGAAGAGGAATGTCTCGAAAAGTACTTCTACACATCACG
AGGATACAGAATTGAAGTCAACCTGTATTTGAACGGATGGGCAGATGCTA
AAGGAAAATATGTAAGTGTAGGTCTACGGCTAGTTAAAGGTTGCTTCGAC
GATGAACAATGTCCGAAAGACCGGAGAGTTATTACCCTTTTCGACGATCT
TGGAAAAGAAAGAGAACTATTAGAACTGTCCGTTAAATGTCCAAACATCC
AAAACGGTTGTGAGTGGGTTGATTCTTTAAGGAAATTTGAGACACACGTG
GCAAATTGTGGTTATGTGTTGTTGGGATGTACAAACTCGGACTGTTCGGA
AAAAGTGATCAAGAAAGAGTTTGAAGATCACGTAGAAAATAAATGTAAAC
ATAGGATGgACCAAGTGATCACCTACAGACAATTCAAGTTGGTATTGGAA
AAAATTCGTGATCTCGAGGAAAAAGTACAATCACAAGAAACGGTGATCAA
TGCGCAAAACGAAAAGATTAAAATGATGGGAAAATTATCCGAATTCCATG
CAGAAAGAATTTCAGCGATGCGCATGCTTGCAGACAAGAATGAAAAGCGG
TTGAACAATCAGCAAGCCGTGCACGAAGCTCGCTCACGCGTGAGTGAAGC
TCGACAAGTGGAGCAAAGTGGAGAACTGAAGAAACTCGAATCCAAAATCA
ACAGTTTGGAGTTTTCCAATGGACACAATGGGGGACATATCGTAGATCTG
CAATCCAAAGAAGATAAACGAGATGAAGAAATTgaatcttttgaaaagaa
aatcgaTATTCTTCACAAGAAATTCCACCCGAAATCCAAAATGTTGTTCA
ATGATTCCCATATTTGGAAAATCAACGCAGtcaaaaagaaaatggaaaaa
gcAGCCAATTCAAGCGAAGAGGAATGTCTCGAAAAGTACTTCTACACATC
ACGAGGATACAGAATTGAAGTCAACCTGTATTTGAACGGATGGGCAGATG
CTAAAGGAAAATATGTAAGTGTAGGTCTACGGCTAGTTAAAGGTTGCTTC
GACGATGAACAATGTCCGAAAGACCGGAGAGTTATTACCCTTTTCGACGA
TCTTGGAAAAGAAAGAGAACTATTAGAACTGTCCGTTAAATGTCCAAACA
TCCAAAACGGTTGTGAGTGGGTTGATTCTTTAAGGAAATTTGAGACACAC
GTGGCAAATTGTGGTTATGTGTTGTTGGGATGTACAAACTCGGACTGTTC
GGAAAAAGTGATCAAGAAAGAGTTTGAAGATCACGTAGAAAATAAATGTA
AACATAGGATGgACCAAGTGATCACCTACAGACAATTCAAGTTGGTATTG
GAAAAAATTCGTGATCTCGAGGAAAAAGTACAATCACAAGAAACGGTGAT
CAATGCGCAAAACGAAAAGATTAAAATGATGGGAAAATTATCCGAATTCC
ATGCAGAAAGAATTTCAGCGATGCGCATGCTTGCAGACAAGAATGAAAAG
CGGTTGAACAATCAGCAAGCCGTGCACGAAGCTCGCTCACGCGTGAGTGA
AGCTCGACAAGTGGAGCAAAGTGGAGAACTGAAGAAACTCGAATCCAAAA
TCAACAGTTTGGAGTTTTCCAATGGACACAATGGGGGACATATCGTAGAT
CTGCAATCCAAAGAAGATAAACGAGATGAAGAAATTgaatcttttgaaaa
gaaaatcgaTATTCTTCACAAGAAATTCCACCCGAAATCCAAAATGTTGT
TCAATGATTCCCATATTTGGAAAATCAACGCAGtcaaaaagaaaatggaa
aaagcAGCCAATTCAAGCGAAGAGGAATGTCTCGAAAAGTACTTCTACAC
ATCACGAGGATACAGAATTGAAGTCAACCTGTATTTGAACGGATGGGCAG
ATGCTAAAGGAAAATATGTAAGTGTAGGTCTACGGCTAGTTAAAGGTTGC
TTCGACGATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018806-exon-sc0000309-1491911889:58419..58449 | TCONS_00018806-exon-sc0000309-1491911889:58419..58449 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1510915933:58419..58449 | TCONS_00018806-exon-sc0000309-1510915933:58419..58449 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1575043694:58419..58449 | TCONS_00018806-exon-sc0000309-1575043694:58419..58449 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1491911889:58741..58845 | TCONS_00018806-exon-sc0000309-1491911889:58741..58845 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1510915933:58741..58845 | TCONS_00018806-exon-sc0000309-1510915933:58741..58845 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1575043694:58741..58845 | TCONS_00018806-exon-sc0000309-1575043694:58741..58845 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1491911889:59330..59446 | TCONS_00018806-exon-sc0000309-1491911889:59330..59446 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1510915933:59330..59446 | TCONS_00018806-exon-sc0000309-1510915933:59330..59446 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1575043694:59330..59446 | TCONS_00018806-exon-sc0000309-1575043694:59330..59446 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1491911889:60776..61426 | TCONS_00018806-exon-sc0000309-1491911889:60776..61426 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1510915933:60776..61426 | TCONS_00018806-exon-sc0000309-1510915933:60776..61426 | Clytia hemisphaerica | exon |
| TCONS_00018806-exon-sc0000309-1575043694:60776..61426 | TCONS_00018806-exon-sc0000309-1575043694:60776..61426 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000309 | supercontig | sc0000309:58419..61426 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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