TCONS_00018800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018800
Unique NameTCONS_00018800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018800 ID=TCONS_00018800|Name=TCONS_00018800|organism=Clytia hemisphaerica|type=transcript|length=709bp
ACCATGCTGAGGAgattgaaaaattgactttggatCATAGAATCAAAATA
TTGGAACTCCAAAATGACTTCAAGTTAAAAGAAATGGAGATTGAAagcaa
acaaaaacagaaaacacTCGATTTAGAGAAAGAAGTTCAATCTCTTAAAA
ACGAGattgaaattatgaaaatgagAGCTCAACATCAACAAACCAATGCT
GATTACaaattaaaagaagaaaaccaAGCCTTGAAAAATCAGATTGCATT
GATGCAACTCAAATCTGAGCATGCGCAAATTCAGGCTGATAGCAAATTAC
GACAAGAAAATCAAACTCTGAAGAATCAAATGGAAATTGCGAAAGTGGAG
AGCGAAAAAGAGAAAGAAGCtatcaaagatcaaatgaatgAGGAGATTCA
AAAACTGAATCTTCAAATAGATGTTTTGAATCTAAATAAAGTACCAGAAG
AGAATGTGGGAATCGTTGCTCGAATTTTCACGGCTGTTGAAAAGATTTTG
GTGAATTACAAAACAGGGGATGGAGAttttttcagtgaaaatttaTACAA
ATTGTGGTATGAAGATATGTCACGTTCGATGGAAAATCGTAAGCAGTANT
TTGGTGAATTACAAAACAGGGGATGGAGAttttttcagtgaaaatttaTA
CAAATTGTGGTATGAAGATATGTCACGTTCGATGGAAAATTGTAAGCAGT
ATGCCAATG
Run BLAST on NCBI

protein sequence of TCONS_00018800-protein

>TCONS_00018800-protein ID=TCONS_00018800-protein|Name=TCONS_00018800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
HAEEIEKLTLDHRIKILELQNDFKLKEMEIESKQKQKTLDLEKEVQSLKN
EIEIMKMRAQHQQTNADYKLKEENQALKNQIALMQLKSEHAQIQADSKLR
QENQTLKNQMEIAKVESEKEKEAIKDQMNEEIQKLNLQIDVLNLNKVPEE
NVGIVARIFTAVEKILVNYKTGDGDFFSENLYKLWYEDMSRSMENRKQXF
GELQNRGWRFFQ
Run BLAST on NCBI

transcript from alignment at sc0000306:131493..132201

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018800 ID=TCONS_00018800|Name=TCONS_00018800|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at sc0000306:131493..132201 (Clytia hemisphaerica)
CATTGGCATACTGCTTACAATTTTCCATCGAACGTGACATATCTTCATAC
CACAATTTGTAtaaattttcactgaaaaaaTCTCCATCCCCTGTTTTGTA
ATTCACCAAANTACTGCTTACGATTTTCCATCGAACGTGACATATCTTCA
TACCACAATTTGTAtaaattttcactgaaaaaaTCTCCATCCCCTGTTTT
GTAATTCACCAAAATCTTTTCAACAGCCGTGAAAATTCGAGCAACGATTC
CCACATTCTCTTCTGGTACTTTATTTAGATTCAAAACATCTATTTGAAGA
TTCAGTTTTTGAATCTCCTcattcatttgatctttgataGCTTCTTTCTC
TTTTTCGCTCTCCACTTTCGCAATTTCCATTTGATTCTTCAGAGTTTGAT
TTTCTTGTCGTAATTTGCTATCAGCCTGAATTTGCGCATGCTCAGATTTG
AGTTGCATCAATGCAATCTGATTTTTCAAGGCTtggttttcttcttttaa
tttGTAATCAGCATTGGTTTGTTGATGTTGAGCTctcattttcataattt
caatCTCGTTTTTAAGAGATTGAACTTCTTTCTCTAAATCGAgtgttttc
tgtttttgtttgctTTCAATCTCCATTTCTTTTAACTTGAAGTCATTTTG
GAGTTCCAATATTTTGATTCTATGatccaaagtcaatttttcaatcTCCT
CAGCATGGT

Coding sequence (CDS) from alignment at sc0000306:131493..132201

>TCONS_00018800 ID=TCONS_00018800|Name=TCONS_00018800|organism=Clytia hemisphaerica|type=CDS|length=639bp|location=Sequence derived from alignment at sc0000306:131493..132201 (Clytia hemisphaerica)
tcactgaaaaaaTCTCCATCCCCTGTTTTGTAATTCACCAAANTACTGCT
TACGATTTTCCATCGAACGTGACATATCTTCATACCACAATTTGTAtaaa
ttttcactgaaaaaaTCTCCATCCCCTGTTTTGTAATTCACCAAAATCTT
TTCAACAGCCGTGAAAATTCGAGCAACGATTCCCACATTCTCTTCTGGTA
CTTTATTTAGATTCAAAACATCTATTTGAAGATTCAGTTTTTGAATCTCC
TcattcatttgatctttgataGCTTCTTTCTCTTTTTCGCTCTCCACTTT
CGCAATTTCCATTTGATTCTTCAGAGTTTGATTTTCTTGTCGTAATTTGC
TATCAGCCTGAATTTGCGCATGCTCAGATTTGAGTTGCATCAATGCAATC
TGATTTTTCAAGGCTtggttttcttcttttaatttGTAATCAGCATTGGT
TTGTTGATGTTGAGCTctcattttcataatttcaatCTCGTTTTTAAGAG
ATTGAACTTCTTTCTCTAAATCGAgtgttttctgtttttgtttgctTTCA
ATCTCCATTTCTTTTAACTTGAAGTCATTTTGGAGTTCCAATATTTTGAT
TCTATGatccaaagtcaatttttcaatcTCCTCAGCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010529XLOC_010529Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018800-proteinTCONS_00018800-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018800-exon-sc0000306-1491911889:131493..132201TCONS_00018800-exon-sc0000306-1491911889:131493..132201Clytia hemisphaericaexon
TCONS_00018800-exon-sc0000306-1510915933:131493..132201TCONS_00018800-exon-sc0000306-1510915933:131493..132201Clytia hemisphaericaexon
TCONS_00018800-exon-sc0000306-1575043694:131493..132201TCONS_00018800-exon-sc0000306-1575043694:131493..132201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000306supercontigsc0000306:131493..132201 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.212866	0.0691928	0.200883	0	0	0	0.77739	1.15859	1.40367	1.29944	1.7854	1.63286	8.09123	7.00455	5.40584	4.83085	0.984713	0.880751	1.60047	2.44791	0.460195	0.851397	1.37293	1.55735	1.78034	2.10588	0.25433	0.301186	2.48291	2.17723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top