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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018696 ID=TCONS_00018696|Name=TCONS_00018696|organism=Clytia hemisphaerica|type=transcript|length=6523bpRun BLAST on NCBI transcript from alignment at sc0000304:302109..321071- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018696 ID=TCONS_00018696|Name=TCONS_00018696|organism=Clytia hemisphaerica|type=transcript|length=18963bp|location=Sequence derived from alignment at sc0000304:302109..321071- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018696 vs. Swiss-Prot (Human)
Match: CHD3 (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3) HSP 1 Score: 747.658 bits (1929), Expect = 0.000e+0 Identity = 395/731 (54.04%), Postives = 505/731 (69.08%), Query Frame = 3
Query: 771 EHNSVCDVCAEGGDILLCDTCTCSWHMTCLDPPLDEVPEGQWSCPKCVAE-------------MNGQIXXXXXXXXTFHGDYCKICKDGGELLCCDFCPGTYHMRCVKPQLISVPEGEWKCPMCKVDDLPEKVERILFWKFYTHKPTA---EEVANGAKDEP-------YKVRKFFVKYANMSYWKCHWIDELQIEKFHVSLYRFFCRKNDMNDPPMTEEGTVE--GGEDINVDEKEHLRNMDQRFYQYGIKPEWLQMHRIIWHRDLKKQGGTQYLVKWKEIGYDAATWEFKSDEDNKDIPDFQKMIDDYNNLR-TAHXXXXXXXXXXXXXXDGWELDIKPNE------YNFEEQPKFITDTGGRLHEYQIEGINWIRYSWGQRENTILADEMGLGKTIQTITYLNSLFKEGRCDGPFLICAPLSTLVNWEREFEFWAPDMYCVTYTGHRENRVVIRNYEMCFDEDNIRKGHKAYKMKSGTPVKFHALLTSYELVAIDAATLQSINWKVLVIDEAHRLKNNQSKFFRTMNGYSIGYTLLLTGTPXXXXXXXXXXXXXXXCPDKFIQRETFLAEFEDIGKEDQIKKLHEMLGPHMLRRLKADVLKGMPTKSEFIVRVELSPMQKKFYKFILTKNFGALNAKGSA-QVSLLNVVMELKKCCNHPYLFATAAAEAPRYQTNAFEVKALTEASGKLVLMCKMLQKLKAQGHRVLIFSQMTRVLDLLEDF--FEGH 2858
+H C+VC +GG+I+LCDTC ++H+ CLDP LD PEG+WSCP C E EE E EEE H +YC++CKDGGELLCCD C +YH+ C+ P L +P GEW CP C L +V++IL W+ + P A + A+G D P R+FFVK+ +SYW C W ELQ+E FH+ +YR + RKNDM++PP + G+ E G D + H M++++Y++GIKPEW+ +HRII H + K+G YLVKW+++ YD +TWE ED +IP++++ Y R + K KK+ + D P+ +E QP+FIT TGG LH YQ+EG+NW+R+SW Q +TILADEMGLGKTIQTI +L SL+KEG GPFL+ APLST++NWEREF+ WAP Y VTYTG +++R +IR E F+++ I+ G KA+KMK VKFH LLTSYEL+ ID A L SI W LV+DEAHRLKNNQSKFFR +NGY I + LLLTGTPLQNNLEELFHLLNFL P++F E FL EF DI KEDQIKKLH++LGPHMLRRLKADV K MP K+E IVRVELSPMQKK+YK+ILT+NF ALN++G QVSLLN++M+LKKCCNHPYLF AA E+P+ + A+E AL ++SGKL+L+ KML+KLK QGHRVLIFSQMT++LDLLEDF +EG+
Sbjct: 377 DHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELDRAPEGKWSCPHCEKEGVQWEAKEEEEEYEEEGEEEGEKEEEDDHMEYCRVCKDGGELLCCDACISSYHIHCLNPPLPDIPNGEWLCPRCTCPVLKGRVQKILHWR-WGEPPVAVPAPQQADGNPDVPPPRPLQGRSEREFFVKWVGLSYWHCSWAKELQLEIFHLVMYRNYQRKNDMDEPPPLDYGSGEDDGKSDKRKVKDPHYAEMEEKYYRFGIKPEWMTVHRIINH-SVDKKGNYHYLVKWRDLPYDQSTWE----EDEMNIPEYEEHKQSYWRHRELIMGEDPAQPRKYKKKKKELQGDGPPSSPTNDPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDNAIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGY 1101 HSP 2 Score: 512.686 bits (1319), Expect = 1.082e-148 Identity = 270/465 (58.06%), Postives = 342/465 (73.55%), Query Frame = 1
Query: 2821 EFLIYWKISLRATXQGHRVLIFSQMTRVLDLLEDFFEGHMWRYERLDGTITGMVRQAAIDRFNQPNSDIFAFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQQNKVMIYRFVTKGTVEERITQVAKRKMMLTHLVVRPGLGSKAAQTMSKRELDDILKFGTEEMFKDD------EENDGRIVYDDKAIELLLDRSKEGIQEKE-GGMDEYLSSFKVANYTVKDKDEPDVEVLKQEEV---IDNTYWEKLLRHHYEQEQEYIASTLGKGKRVRKQVNYSDGALAAETKIRQGYDDSDFD-ASELVDDSDGSEEETSNLTARQKKFRERDVLPPLLAKVGNQLEVYGFNPRQRRAFLTAVMRYGLPPRDFKTARDKCNFTVFRCIHNLRGKTEKAFQAYTSMFLRHLCEPMHDNKAEAYSDGVPREGVNRLQVLSRVGIMSLIRRKVEEYSSIN 4182
+ ++ K+ + QGHRVLIFSQMT++LDLLEDF + ++YER+DG ITG +RQ AIDRFN P + F FLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQ NKVMIYRFVT+ +VEERITQVAKRKMMLTHLVVRPGLGSKA +MSK+ELDDILKFGTEE+FKD+ EE+ I YD++AI LLDR+++ ++ + M+EYLSSFKVA Y V+++D+ + + + +D YWEKLLRHHYEQ+QE +A LGKGKRVRKQVNY+D A + + S++ SE D+ E + RQ + + LPPLLA+VG +EV GFN RQR+AFL AVMR+G+PP+D FT + +LRGKTEK F+AY S+F+RHLCEP D +E ++DGVPREG++R QVL+R+G+MSL+++KV+E+ IN
Sbjct: 1061 KLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAG-SMSKQELDDILKFGTEELFKDENEGENKEEDSSVIHYDNEAIARLLDRNQDATEDTDVQNMNEYLSSFKVAQYVVREEDKIEEIEREIIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYNDAAQEDQD------NQSEYSVGSEEEDEDFDERPEGRRQSKRQLRNEKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQD--------AFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADG-SETFADGVPREGLSRQQVLTRIGVMSLVKKKVQEFEHIN 1509 HSP 3 Score: 288.115 bits (736), Expect = 6.989e-78 Identity = 134/207 (64.73%), Postives = 160/207 (77.29%), Query Frame = 1
Query: 4912 PLFMFNIADGGFTELHVLWEAEEKR-----KIDNIWWRYHDYWLLAGVVVHGYGRWQDILNDIRFDTINRPFSRMT-----LDYKNKFIARRFKLLEQALIVEEQMKRSTFKNIQQSTTHQVMSLQSRFAELECLAESHQHLSKESLAGNKPANAVLHKVLNQLESILSDMKNDVIRLPTTLAKMPPITNRLDMSERAVLTRLTTGG 5502
P FMFNIADGGFTELH LW+ EE+ K++ IW R HDYWLLAG+V+HGY RWQDI ND +F IN PF L+ KNKF+ARRFKLLEQAL++EEQ++R+ + N+ Q H M+L +RFAE ECLAESHQHLSKESLAGNKPANAVLHKVLNQLE +LSDMK DV RLP TL+++PPI RL MSER++L+RL + G
Sbjct: 1705 PRFMFNIADGGFTELHTLWQNEERAAISSGKLNEIWHRRHDYWLLAGIVLHGYARWQDIQNDAQFAIINEPFKTEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNLSQEPAHPAMALHARFAEAECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKADVTRLPATLSRIPPIAARLQMSERSILSRLASKG 1911 The following BLAST results are available for this feature:
BLAST of TCONS_00018696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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