TCONS_00018614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018614
Unique NameTCONS_00018614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018614 ID=TCONS_00018614|Name=TCONS_00018614|organism=Clytia hemisphaerica|type=transcript|length=621bp
GAGAATTCAAAATGATGAATTACTGCATTTTGGTTTCGACCTTTTTAAGT
ATAAAAACCATTTCAAGTTCTTACATAGCATCTGAGAAAGGTTCAATCGC
taaagaaaatttatatttattaaAAGGAGTAAGCTCTCCAGTTCAATGTA
CTTTGAGATGCAATCAAAGGAAGGAAGCTGCTTTTTATGGAGCAGGCGGC
ACATGCGGATGTTTTTCAAGGGAAGATTTATCATCAGACAGTCAGACTGA
AATATCTGGATACAATCATTttgagATCAGACATACAAAAGCACTCTATA
TACCCGAAGATACACCAAGACAGAACGAATTTTCGATGGCAGAACTTGAC
TTGGTACAATATCCTGAAGGAAAGATTGTTAACATTATCCCACAGACAAC
TCACGCATTCgaactgaattttaaaatccAGTATCATCAAAAAGTTGAAC
ACCAGACGCAAGTGTTGGAGTTCACTGATGGCTACGGGGTTCATAAAGGT
CCTCAAATCACCATGAAAGGCGATTGGATAACGTTCAATTATCGCGATCT
AAACTCTAAGAAAGTTTTACTTCAACCTGATACCACTTATAACGTCACCA
TTCGACAATATAAGACTGGTG
Run BLAST on NCBI

transcript from alignment at sc0000303:108278..123393+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018614 ID=TCONS_00018614|Name=TCONS_00018614|organism=Clytia hemisphaerica|type=transcript|length=15116bp|location=Sequence derived from alignment at sc0000303:108278..123393+ (Clytia hemisphaerica)
GAGAATTCAAAATGATGAATTACTGCATTTTGGTTTCGACCTTTTTAAGT
ATAAAAACCATTTCAAGTTCTTACATAGCATCTGAGAAAGGTTCAATCGC
taaagaaaatttatatttattaaAAGGAGTAAGCTCTCCAGTTCAATGTA
CTTTGAGATGCAATCAAAGGAAGGAAGCTGCTTTTTATGGAGCAGGCGGC
ACATGCGGATGTTTTTCAAGGGAAGATTTATCATCAGACAGTCAGACTGA
AATATCTGGATACAATCATTttgaggtttttttttttttaataaatttac
taattaaattaaatttttgtggAATGTAGAATGTCAATACCTTTTGCTGG
GAAAACTTTGAGTTTAAGTAATCTGTGTATAGCCTTACCTTTGAACTTCG
TCCCCGTGCCTAATCTCCTTTTGATTGATTAGAAGGTTAGCCCTGGACTC
GTCGATGATGTTTGCCATAAGATTGAGGATGGGTGAAGCCTTTTATTGTA
AATTGTCGCTATAGCGATTCGGCCTCCANCCATAAGATTGAGGTTGGGTG
AAGCCTTTTATTGTAAATTGTCGCTATAGCGATTCGGCCTCCAAGTATaa
tgttgattttttaataattctATAATACTATAAACAAACCGCATCATTTT
TGGAGCCTATTCATCAATATGGAAGGACTACCTTTTCGCCTGTAAAATTG
GCTACCGAATTTTTTTCTCATAGATCAGACATACAAAAGCACTCTATATA
CCCGAAGATACACCAAGACAGAACGAATTTTCGATGGCAGGTATGTATCT
ATTTAACGGCTCTATATTTAACATAAGTGTTCTCAAACACATGTTTCATG
TCAGaacagtgtctccctattgttacaTTATGCTGAATAATAGGTCCTCT
TTCTGACCattcttgctccacatccgtgtcaatccaatgtgaaaaagctt
gtatcaatcttatttaaaaacaaagcctTTAAGTTCAACAAAACTTTTTA
CCGAGCAAAAATATATGTACCTTATCAGttctttttacaccggcccttat
tgccgtttttttgggctcgtggcgtaataaaggccggcgtaaaagggcca
agattttgcaattctaacctaaaagcggcgttaattttcttttattatta
tttctcaatttaaaggactTTAGGTATGATTTGAAAACGaaaatccattg
ttttactccatatttaaaacttcagtgattttcgatggaattttcaacag
tttactactgaaaaatgatatgtaaattttagtcattatttactaatttg
aagcataagtatccatttttacaaattttgccgttattaacggccctaat
tggcgtaagccaaaattaggctgtggcgtaataagggccggcgttaaatg
ggctggcgttaaattagggccggtgCAGAAAGGGACGATAAGGTACTTCA
CGATAAGTCATGTTTTTAATATCTTTACCTTACCCCATAGAAGAAAGCTT
CTTAAAAACATTGTACAGAGCTGGAGCAGTTACTGTTTAAGTACtactca
aaaattgaaattttgtgacTGTTATTGAAAAGGCAGACCAAAATAACCCT
AAGTTTGACTAAGGACGCTGCTGTATCACAGATCTGTTGAGACCCCTGCC
CCTGTGattaatagaatttctattccgaTTGGGAATTCGAAAGAAATTct
gagggaaaaagtttttCAGGAGTGTGTCAAGGAAAACTGCCGAAAATCTA
AGATCTAGAAACGCTTTTACGTGAATATCTATCTCTCTTTAGAACTTGAC
TTGGTCCAATATCCTGAAGGAAAGATTGTTAACATTATACCACAAACAAC
TCACGCATTCGAACTGAATTTCAAAATCCAGTATCATCAAAAAGTTGAAC
ACCAGACGCAAGTGTTGGAGTTCACTGATGGCTACGGGGTTCATAAAGGT
CCTAAAGTCACCATGAAAGGCGATTGGATGACGTTCATTTATCGCGATCT
AAACTCTAAGAAAGTCTTACTTCAACCTGATATCACTTATAACGTCACCA
TTCGACAATATAAGACCGGAGAAGACGACAAAGGGCGATTACGTATTCTA
ATTAATAAAGTGCAAAAATTTCCATCTTTTCTTCTTGAAAATGTTCCTTG
TTATATGAACATCAAATGTCTGATTGGTGATCCATTTAAGAAGTTGCCTT
CAACTCCAGCTGTGGTGACTGATTTGAATTATACCACAACACCGGTTTAT
TTTGGCATAGGTAAGAAAATGTGTCAAAGTTAGATCCATAGGCGCTATGA
GAAGCCGTTGGGGGTTAGAGTCGAATCTCCTATATACGTCTCGGTTCGCG
TGTTTTTTAAACAATGAATTGGAAGTAACAGATTATGAAATATCTCCTTT
TGGGTTCCAAATTTCATCTTTCAGGAATCAGAATGGTCATACAttgatat
ctgacagggtccgtTTTTGAGATCCGACGGTCAACTCCCCCCTCCCCCTT
ATACCCGAAATTTGATATAGCCCATGGCGTTTTAAATCTATAATATAGAA
CGCCATGATATAACCCAGTcatctcaaaattttggtattttatgtTTCAT
GTTGCTTCAAGTCTTTTTACAATATTTGGAACAAAACAGGAACTCTCtca
gttttaacattagacttaagattTACCATGAGATCAAATAACATGCacca
gtggaggctaacatgcttTTCCGCATGTATTTagattctattgtctttag
gtgcgaaaaaaataCTGGGACGATTTTAGGGTGTTagaacggacaaaaaa
tgcccatCCGgtattggcggctacggtcgaaaaggtgtaacTTGCTTGAT
GTGTTTATATATCTCTCAATTTAGGTACCCAGATTTTTCTACCGGAACAT
CATACAGTTGAATCAATTGAAAACTGGCCCCCACCGAATTGGCAAGTCAA
ATTGGGGATTAAATTAGTAGGAAATGTTGGTTGGGCAGAcgctttttttt
tgtcaaaagctGACGGAAACTTTGTTGGAGGACGAATACCAAACATTCAA
TTCTCTCCAACCAATAAAATGCACATATGGTCTCACATTGGCACTAGCAG
TCAAATCGTCTACGAGCAAGNGACGAATACCAAATATTCAATTCTCTCCA
ACCAATAAAATGCACATATGGTCTCACATTGGCACTAGCACTCAAATCGT
CTACCAGCAAGTCCTTCCATTAAACCAATGGTTTGATatcaaaattgaac
aaaaattgagAGGTGGTAATTACTATGTGTTGGTTTTCAAAGATGGTGTT
AAAGTCGCCGAGGTGTTGCACATGGGATACACTGTTATAAGTGAGCAAGT
CAAAGTTTCATTTAGGAATTCACATGGGAAAATCGTGATGCGAGATTTTG
ACTATGGTATTGTATAAACAATACTTTACAGTTAGAAAGTAACACTGGAC
TTTAAATAAAACCTGGAGACagcttctcaatcccggccaaccgAAGTCTT
TAGCGTGTTTTGGTAGTGGTAGCCTAATGGTAGCACAACTCAATAGCGCT
ATTAATGAATCGAGAACGCTTTACTTATCCTCGAATAAGTATGATGATGC
AGTACCATTTGAGGTAAATTTTAACACTGTAATGGTTTCTTTAAAGGTGT
CAGAGTTTTCGAAAAAACTCCCCTTTAAAGATGACGGATATAGATTAATC
CAGGGTTTATAAAGCTCAGTAAAAGCTaacagaaaaaaagacaaaattga
tTGTGGAGCAACCAGCGCTAGGGTGAAATCGAATTATGCTAATGGACAAT
TTGGCCTGACGAGCCTTGTCGGGCAGAGAGGACGGAAATGGTCAGGAATG
TAAATATGAAATTTGACTTAAAAATTGGATATTTTAcataataaaatgaa
atgaaatttttttaactatttaaaccaaagaaaatatggctttttataat
aaagataatactagtcatagctttcactctttcactaaatgcccccacat
aaagatcatgtcatgcacttataaagctttaatgctttaagattaaacat
taaaaaataatcaggaataattgattgattNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNgtgttatatcatacactgttttgatttgcattta
taacactcgcttcagcttttcaaagctaaatcaaaactagaattgtaata
tgtagtaatgataataccatataacgtaatatgaaaatatgtagaatacc
gtcccggaaaaaaccgaacatttatggaagagactaactacggatatgct
tacgcgacaacaacaaaacaattcgcaaagttttgagattccagtccaat
atctatgcgtgaaggtatgagtgcctcctcgtcgctacgctcctgcgggg
gcaataacaATAAAGAAcggaaaaaaagtaaagaaataaaCTACAAACAA
CTTACATACTAAAAACCTATAGTATAGAAAGTATAAAGTACAAAATATAA
tttgaataaaacaaaaaataagatggacacttttctatttttgtaaGTAG
TTTTACTTGAAATTCCAGTGCATGAAATCACATTAATAACCTAAGAATAG
AGCATCTATTCTTCCAAAAGGACTGAAGTACGGACGATGGCTTCAGTGAC
GGAATACGGATCACAGTTAGATGAAGGACGTCTGTCTTCAAGGTATCCTT
TGTCATCTTCAGCGATTTGTCTTGGGATACGGATGGACGTGTTACAGCTA
GCAACGCCGTATGAGAATTCGTGCAAaattttaccaccctaaaaccatcc
cagtctttttttcgcgcctgaagacaatagaaaaaagtgtaaaaaaagga
ttggatcgagtttagggtggtaaaaaatgcttgcgcggcaattggcggct
acggtcgaaaagatgtattgagttaaaataatagacagactttatgttat
gattctctatcactgactctttttaaaaagcattgatgacttttttaagt
tgtgttttcaacgacgggaatgaaaatatcaacaatGAACTTCATcaaag
atcttggatggtcgtcatggttacttttgtcttcgttgattgcgcgctga
atagaatctcgattggtcgaTACAGGTCACTATATGATAttggcctgtgc
ttttcacggtacataAAGATATCAAATATCCAGAACAAACACTCCTCGGA
CGAAGACATGTAcattcataaaatttcaaatcgagAACTAGAGATGAATC
ATCAACCTTTCCTAAGAAAGAATAAAAGTGATGCCTTAAAACTTGATGGG
TGGATACTACTACAATAaacgccgaaatatattggcaattttgggtattt
taacgtttttcacaatttaaagGTCGGgtgagaattgcagtttcagtact
tccacttggcttcattggatttttcgatttaggAGGGGTTAAGTTGCTTC
CAGACTATACTCTCAgtcttattggaacatttttgagcttttgaatCCTG
AGATCCCAAGGTCCtgatgttaaaactcagagttaaaactgtAGTACTTC
CTaactgtacttcaaagcacttaagggctctgaccatagtcagaaagctg
aatttagtatctgaacataaaagttatgttttagattctttaacactttt
aacaaagaattgcctttataaattgctttttaatcagaCCCCTTatgagt
aattaagaacttaattgcaaaaatgatgttatgaactttaaaaagacgtt
aataatatgttgcatcaccttcttttataaaaagtgctaagttttaatgg
gtaattaacttttttgtttcgaacttttttcaaactgtctgcaaagaata
aaactatttcaaattttgcggaaaatatttttaaaaagatgtgtcaaaag
ttatgactgtttttctaagcaaaatccagatggaaaattgatgaaaaacc
actattttgaagatttcgagacaaagaagcatttacaaaaatttttattg
ttcggtaaaagatacaccatctactgcgaaaattttttcaaaatgatttt
tcttcgccgaaactaagctcttcaaagttgaaatactcttcctcgcaaaa
gtcttcattttcttcttcatcaaattttttcaNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaattttttcaatgcaatttttgaattttcagatt
caggaatagtttgtctaacagaaaatgtataacatgccatagttttgttg
gttacatcagttaGAAAacacacggcaattatgaaaaattcgctatggtc
agagcccttaaaatcaCTTACGGTTACAAAGTTTTGaaggaattcccctt
ttgtgcgcTGGTTGTAGAACactttttccaagaattttgaaaatcctttc
tctttctttttgcGTTTTATACTTTTCAAATTATGGAGGTAAATGTTACT
TCCGATCCAGCGTTTTTATGGAAACTATACAAACTGTACTGTGCAACTTC
AAAAATAAGAGGATTTCAAATCCTACATAGGAGACTCCTTTCAGCTTTCC
ATTATTCCTTTTTTTGGttgattaaatttcgcgtggaaTAATTCTCGCGA
TTTTTACGAATTTAGCTCTTCCGCGAATAAATTTACTCCtcccaaaatat
tcaaaattctgATTTTGGTCCAAAACTcgaagaaaatgaaagaaattatg
aaaaagaggctgattcATGAACTTTAAGCCCACGAAAATTATAATCTTAA
GGTAGGGTAAGGTAAAAAGCCCTGGGGTGGCAATGACCTTGACGGTCGAC
GGGGACGTTGGAGTTGACTCTGCCAGCTATGAATGTATTGTTAATTTGGA
CCCCGTCGGAActaaaaaagttcaaattttcaccctgaaacgtatcaaaa
attacgaaatatagacaaaagattgaaagaatGAATGGGGTAAGAATGAA
TTTCAAACTTATTCCTTCACACAAATTTAGACTCGATTTTTGCATGGCTT
AAATAattcattattatttttattttgtatttttctgtGGTTGAATTAAT
GAAATATGTTTTCATTGTTGTCACTGGTGTCTATTTATTCATAAATGCTT
CGACGAAAGTTTTTCTCACGAATTCATGACGGACGGGAAGAGTCGGTTCA
TtttggaaaattcaaaatgatgaATTACTGCATTTTGGTTTCGACTTTTT
TAAGTATAAAAACCATTTCAAGTTCTTACATAGCATCTGAGAAAGGTTCA
ATCGCTAAAGAAAACTTATATTTATTAAAAGGAGTAAGCTCTCCAGTTCA
ATGCACTTTGAGATGCAATCAAAAGAACGAAGCTGCTTTTTATGGAGCAG
ACGGCATATGTGGATGTTTTTCAAGGGAAGATTTATCATCAGACAGTCAG
ACTGAAATATCTGGATACAATTATTTTGAGGttcgttttttaaaaataaa
tttactgATTAAAACGTCAACGTCAAATTTTTGTGGAATGTCAATGCCTT
TTGCAGGGAAAACTTTGAGTTTAAGTAATCCGGGTGTAGTCTTACCTTTG
AACCTCGTCCCCATGCCTAATCTCGTTTTGATTGATTAGAAGGTTATCCC
TGGACTCGTCGATGATGTTTTCCATAAGATTGAGGATGGGTGATGCCTTT
TATTATAAATTGTCGCTATAGCGATTCGGCCTCCAAGTAGAATGTTGATT
TTATAATAAGTTCATAATACTATAAACAAACCCCATCTTTTTTGGAGCCT
ATTCATCAATATGGAAGGACTACCTTTTCGCCTTTAAAATTGGCTACCCA
ATTTTTTTCTCATAGATCAAACATACAAAAGCACTCTATATACCCAAAGA
TACACCAAGACGGAACGAATTTTCGATGGCAGGTATGTATCTATTTAATG
GCTCTATATTTTACATAAGTGCTCTCAAACACATGTTTCATGTCAGAACa
ttgtctccctattgttatattatgctgaatAATAGGTCCTTTTTCTGACC
attcttgctccacatccgcgtcaatccaatgtgaaaaagcttgtatcaat
cttatttaaaaacaaagcctttaagtttaacaaaactttttacCGAGCAA
AAATATATGTACCTTATCGGTTccttttacaccggcccttattggcgtta
tttttgggctcgtggtgtaataagggccggcgtaaaagggccaagatttt
gcaattCTAACCTAAAAGCGGCGTNagggccggcgtaaaagggccaagat
tttgcaattttaacctaaaagcggcgttaatttttattattattatttct
caatttaaaggactttaggtatgattcgaaaacgaaaatccattgtttta
ctcaatatttaaaacttcagtgattttggatggaattttcaacagtttac
tactgaaaaatgatattttaatctaaattttagtcattatttactaattt
gaagcataagtatccatttttacaaatttaggcgttattaacggccctaa
ttggcgtaagccaaaattaggctgtggcgtaataagggccggcgttaaat
gggccggcgttaaattagggccggtgtagaaagggccgataaggtactta
ACGATAAGTCATGTTTTTTATATCTTTACCTCACCCCATAGAGTNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNaagtgtcaatatttgcaattata
atctttttcccgctcaaaataattcttgagaaaaacatgtatgtggattt
gtgtattgaaagtttttcatttgagttaattttgttttgagagttgNtgt
tgcttgataaatttttttctcgctccgcaagtttctgcgtagctagcccc
tgtatctataaggctggaacaccggattcttccagtcgtttatacaaact
aaatcccgtattattattatttttattattattatttttgttattagtat
tacacgcattataaacgactccagtctaccaaTAGAGGAAAAGCCTCTTA
AAAACATTGTACAGAGCTGGAGCAGTTACTGTTTAAGTACtactcaaaaa
ttgaaattttgtgacTGTTATTGAAAAGGCAGACCAAAATAACCCTAAGT
TTGACTAAGGAAACCGCTGTATCACAGATCTGTTGAGACCCTTGCCCCTG
TGATTAATAGAATTTCCATCCCGATTGGGAATTCGAAAGAAAttctgagg
aaaaaagttccatcggGGCTCCGAGACAGGAGTGTGTCAAGGAAACTGCC
GAAAATCTAAGATCTAGAAACCaacctcgcgagccagggcgaATCGTTGG
TGGTCAGGCGGCAAAAGTGAGGGCGGGGATGGCCAGACGATTACGATAAG
CGCCCATCTATAACGTCAAAAAGCTTATCGCCCTGCGTACGAGGTTGATC
TAGAAACCCTTTTACGTGAATATCTATCTCTCTTTAGAACTTGACTTGGT
ACAATATCCTGAAGGAAAGATTGTTAACATTATCCCACAGACAACTCACG
CATTCgaactgaattttaaaatccAGTATCATCAAAAAGTTGAACACCAG
ACGCAAGTGTTGGAGTTCACTGATGGCTACGGGGTTCATAAAGGTCCTCA
AATCACCATGAAAGGCGATTGGATAACGTTCAATTATCGCGATCTAAACT
CTAAGAAAGTTTTACTTCAACCTGATACCACTTATAACGTCACCATTCGA
CAATATAAGACTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010407XLOC_010407Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018614-exon-sc0000303-1491911889:108278..108552TCONS_00018614-exon-sc0000303-1491911889:108278..108552Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1510915933:108278..108552TCONS_00018614-exon-sc0000303-1510915933:108278..108552Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1575043694:108278..108552TCONS_00018614-exon-sc0000303-1575043694:108278..108552Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1491911889:109001..109067TCONS_00018614-exon-sc0000303-1491911889:109001..109067Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1510915933:109001..109067TCONS_00018614-exon-sc0000303-1510915933:109001..109067Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1575043694:109001..109067TCONS_00018614-exon-sc0000303-1575043694:109001..109067Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1491911889:123115..123393TCONS_00018614-exon-sc0000303-1491911889:123115..123393Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1510915933:123115..123393TCONS_00018614-exon-sc0000303-1510915933:123115..123393Clytia hemisphaericaexon
TCONS_00018614-exon-sc0000303-1575043694:123115..123393TCONS_00018614-exon-sc0000303-1575043694:123115..123393Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:108278..123393 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.328004	0.306959	0.927208	0.0887808	0.197497	0.533834	0.0731025	0.339621	0.519704	0.468682	1.18976	0	0	1.46477	1.72125	0.095093	0.243659	0.365341	0	0.126068	0.585052	0.142083	0	0	0.0973774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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