|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018580 ID=TCONS_00018580|Name=TCONS_00018580|organism=Clytia hemisphaerica|type=transcript|length=2685bp ATTTTTCACAGGGTGGTTTTAGAGAATGAAATATAAGGATTTGAATGGAT TAAGACTATGATAAGCCGATTAAAAATCACAGCAAGAAATGCAGCAATAG CGATCTGGTATAAGGAAGTGAACCCATCATAAGTTATTGGGTTGTCATGT TTACTCGACATCGATCGTATGTTGAAGGGGCAAGTGAAGAAAAAGACCAT TTAGTGGCCCAAAACACAGGGTCGGACGGTCACCTACGGAATGGGAAGAC ACCAGACGACAATAACAACAAAAGCAACACAAGCCTCAAGAATGGAGTTG GGGCCAAAGGTCTTCCAAACTCACGACAGAAGCATCGAACGAAGCGAATA CAGAGACGAAATAATGTCAACATAAAGCATAGTTCTGCCGGTGAATTTGA TGCCAATCAAGTCAAACGCTTCATATTCTTACAATCCCGTATTTACTGGC TTTCCTCTTTAATCGGTGATCGACAAAGACCCTACAATTCCACCAAAGGA GTCTTGGGACTTATGTTATGGATATTCAATTTAACTATTCATTTCGCATT AGACTTTTATGAAGCGAATACAGTGTTTCATGTGAGTTGGGCTTCATCTA TTGGTGTTTTCCTCGTCATGTTTATAATATCGACCATCTTTTTAATAAGA CACACTGTTCGTTGGTTCATCAAGACCTTGAAAAAGCTGTCAAAAGACAA AATATACTGCAAAACATTCGTTAAATTGAGTTTCATTTTCAAGCTATCAC CATATGCAATGTTTATACTCTCCGTCTCGGGGGCTGGGGCGCAGTATGGT TGCTATGCTTACGATGATGCATTGACTGTCTCTTTCACAAAAGCAGGGCC AAACGGAACGAAAGTGGAATTGGTGCCTAATGCTGCTCACATTGTGATCA ACGTTGCACGTTTCACAAGTCTCATGCACATTTATTATATGATGTTCTTG TTGTTAGGGTTCGCTCTCATCATATTTTTCACAATAGTACACACGCAAAG ACTCTTCAATGCACACATTGGGAACGAACTGAAAGCACACCCTCCGTCGA TGACTTTCCAAGAAGCAGTAGACGATGTAGCAATGCGAACCAAATTGTTA AGAAGTGCTTCCGAAAATACCACGATTATCTTCTCGACGCTTCTATTGGC AACCAGCTTATCCTTCGTCGTGAACGCATACAACTTTCTATTCATTAAAC GTTACGCTATTTATATTTGGTTTGCCATCGCTCCTCTCATATGGACAGTC TCAATTCTGATTGGGTCAGCCTTTGTGACGTCATCCTACCAAAAGCTAAA ACTAGTAGTCATGCAGTCATGGGTAGAGATACCAGAGAAGTATGATGAGC TGTGGAGTAGACGAACTACCTCTAATAGAATCAATACAGCAGCATCTATA AGAAAACCCACCTTAGATTGGCGCGCCGGTCTTGAAAACATGCGGCGTCG AAAGGCCGAACGCGAGGCCACCGAACACGCTGCTATGGAGGAGGAAGTTT TTGAGAAGGAAGATCTAAAAGAGAACTGTGTCGTTGATATTAACGAAGAG ATGGTTAATGAACAGATCAATGTCGAtaaagaaaacgaaaagaaagaaag tgtGTTTTCAAAGACCGTTCGAAATATCAACCTTTTAAATAAATTCATCA AAGGTGCAAGCGACAAGAGTGCCGACGAGATCGAAATGGGAGCTGAAGAA GTTAGAAAATCACTCTATGACAATGTGGAACAACAAAAAGATACTTTGAC TGTTGAGCAATCAGCGACAGGTGAAGAAAGCTCGTACAAAAGTGGTGAAG AGTTTCGTGAGACCACGGAAACAGGTGACCAGTTAACTGTCCCTTCTTCT GATGCTGCTCTTTACAGTGATAATCCCATTGTTAACGAACAAATACGTTT GAAAGAAGTGCAAGAATTGAGAAAACAGTCTATAGCcagtgaaaacaaag aaaacgacTCTTCGGCCTGGAAAAAGATTCCGCGTATAAAATTTCGTAAA GCTACTAAACCAAACATTGAAATTGATAGGACTAGGGAAGAAATATCCAC GTTTGAAAAGGAGAACAGCAAAAACGACGAGGGGCCGCAAAGGACTAACA GCGTTAAATTCGATAAAGTGGTGCGCCTTGCACAGCAAGTCAACAAGTTC ACAGACAACACAAAAAGGCAACAAATAAGACGAAAGTTCAATTATGAAAA GTACATCAAATATCTGGAATTGACTTTAGATACTGTGGGATTTTCTTTGG GTAAAGTGACGATTACTTGGGACCGCGTTTCTTTCTTTATCGTTCTTTTA ATGACCCTGGTGGGTGTGTTTGCTCAGAACGCATTCCTCAAGTAATCAAC AGTGAAGGCGATCGAAATAACTAAGATATAAATGATTCATTCAAACAATG ATCTAACGACGGTGCATGTGCTCATGTTACCGAAATGCATTTTCTTATCA AGATTCCGATATCAACCCTCCTCGCGTTATTGTAGTTTCAATTTCAtaga attatttttaaaattttttgtagATAATGGTTCTTTTACTTCTTTTTTAC GCATGTACATTTCAGTgagaattcaaattcaaaaagaaacaaCGACTTAC AGAAATCTTTGGACAACACTTATCTTCTTTACACGTGCAAGTATGAAAAT AATGTGCAGTTAAAATCTACCCAATCCAGTTGTNN Run BLAST on NCBI transcript from alignment at sc0000301:202711..209883- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018580 ID=TCONS_00018580|Name=TCONS_00018580|organism=Clytia hemisphaerica|type=transcript|length=7173bp|location=Sequence derived from alignment at sc0000301:202711..209883- (Clytia hemisphaerica) ATTTTTCACAGGGTGGTTTTAGAGAATGAAATATAAGGATTTGAATGGAT
TAAGACTATGATAAGCCGATTAAAAATCACAGCAAGAAATGCAGCAATAG
CGATCTGGTATAAGGAAGTGAACCCATCATAAGTTATTGGGTTGTCATGT
TTACTCGACATCGATCGTATGTTGAAGGGGCAAGTGAAGAAAAAGACCAT
TTAGTGGCCCAAAACACAGGTAGGAAACATTCGTCTCTTTGTTCCTAGTT
TTCAAGATAAGGATTACAGCCAGCAGGGTCATATCGTCAGGGTTTTAGCA
GGAGAATGAAACCGTAAAAGGGCAAGAGACGAGTTGCCTTCTATACGAGC
TGTATGAGACACACTTCATACATTTAGAATCACATTTAGGTAGGATCCAA
GATAACGAATAAAGCCCAACTTAGACAGATATTATACTAGACAGCCAGAG
ACAATACTGTGATTGCATTATTCCTGCAATGCGGCACCGCCAATTGATGC
AAAACTTGAATTCCTAAAGTAAAGGGCTAAATTAGGAACGGGGGAAAAAA
CTCGACAATTTCCCGTGTTCGATTTGATTGACGTGAAGATCTAATGATTA
AGATATTGATAAGATGCTTTAATAAGGTAGGATAATCTTTTTCTTTAACG
CCAAAGGAAAACATGACAAAAAATAGCAGCTTTCCTTGGATTAGTTAGTA
AACAATACCGGTGTGATATGGCCCCAATGCAAACAAGAGGAAACAGAGCA
TTCTTACTTATCACTTTTCAATGATTAGTGGGGGTCCTCCATTCGAGCAT
GAGAGGTTGATTAAGAACTGAATAGGATAGAAAGTGATCACACAGTGGGT
AATCAATCATCAGCGTCAAATATTTCTCATTGCATGTTGTCATGACAACA
TCACGTACACCGTTTAACATTTTGTTAATTTGTTCAATATATATGATATG
TAGAGTGATGAAATAAATGACTTCTGAGACAAGTAATGGTGGAGAGAGTA
TTTTTCAAACACATTCATATTTTTGTGTTGACTTTATTGCTTTTTAGGGT
AAATAAGTTAAATTTTAGAGTTTAGGTGTTATTCTTTTAGTATGAAAAGT
GTTATTTGATCAACTTGACGAGGTAAACGTTATGATATCAAAAGTTAAGG
AAAATCTTTATAGCTCTTTAGACAGTAATCAAGATAGAAGGAGAAATATA
GGAGTATGGGTAAATCAAGAACGATGAAGAGGAGAAAGTAGTTTTGAGGA
GGTTTGATGGAAACTCGAATAACAAGAAGTTCCCAAGGTAAAACATCTTA
CAGTTTACATTTTTTTAATTTGCTAAAATATAAACATTTGCAAGTAAAAA
GAAAAGTGTCAAATTCTGTCAAATTAATTTTCTGCTGTTTGTAAAATAGC
TCGATATCTAGAATACGTGCGTAGAAAGAAATTAGAATTTCTATTATATC
TTTTAATTTCACTCGGGAATTCTTTGTCGTTCCGCAGTTAATCAGAGGAT
GGGATATAATTATAAGTAATTTTATACTGGAAAAGAAAGTAAAGCAAATT
TTCTATTTTGATAAGAAAAACATACACCTTCTCCAAAAATTTATAATTGA
AAAATTGGAAAAAGAAAAAAAGTGACGTGATAATCAAATATTGATAAAGT
TGTGAGCAAGATTTGAATTGAAAAATGTTAGCAAGTAAATTGAGTAAAAA
ACTGAAACTGAGACAACTTTGGAAAGAAAACTGGGAAATTGAAGAAAAGC
CATTAAATCTAGTCGAGAACCAACTTTTCTATGTGTTATACCCGTGTTAT
AGCGGAGGAAAGGGGTCGAAAAGTTATATAAATTTCAGAAGATAAACTAT
TTTTATAGACATATACATATACATGGGGTATGTAGTATACGTTTTTTTTT
ATATAAGAACGTCAAAAATTTTCGAAGCATTCGGATTTTCTTAGTTTTTT
GGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAGCATTTT
TTGAGCATTTTGATGTAATTTCTTAAGAAAATGCATGTTTTAAGTCTCCA
AAGCCTTCGAATGTTCTTAGAATGTTCTTAAAATTTTGGGCCTCGAAGCC
TGATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAACGTGTACCCCAAA
AGTACAATGGGTTACTACATGCCGTATATCCGGGGGTACTAGGGTTGAGA
GCTGACGGGGGAGTGCCACCCGACTTTCGTACTTTGGACCCTTACCGGGA
CTAAAAAGGAGAAAACAAGGGAAAATTTTGATAATTTTACGACCCTTAGC
GGGACAGATTTGACCAATTTTGACCAAATTTCGATCTTTCAGGGGGTAAA
AAGTTGAAATTTTCCTATTTTCCCGACCCTTAGTGGGACTGAAATTTGAT
TTTCTGATTTTTCCCACCCTTAGCGGGACTTTGGAAGTCCAAAAATGTAC
CCTTGTCTAAGTAACCCCCCCCCCTCCGGGTACATCCTTACTGAACTTGA
AGAATATATATTTACACTTCGAAACAGGTTGACAGTTTCAGTATCTAGGT
TGGATTACTTGACTTTGTAAGGGTTGGTGAAGAAGGAAAGTTTTCGCGAT
ACATTACAGTAACGGTCTGGAATCTTGGTTAAAAGGAAAGACCAAGCGTG
ATAATTATTTAAGTTGTGAGGAGAAGATCGATTGATTTGTCAGGGGTTAA
CTTTATGAATTTTTTTCTTGCTTTTAAAAAAGAAGAAATTTAAAGAAAAA
AAATAAAGACTGCTACAATTCAGTGACACATATGTAGCATGAAATGGTTA
AATGGTGGTAGTAAAGTGGCGCATAAGGTATTAGGTAGGTGTATGTCCTC
CATTTTTATGAGTAGATAGTAACATTACTTAGCAAAACATAAGAGCATAA
GTTGAATCCATAACCCATCATTGAATGTCGACATCTGAATAAAAGCTACT
TTTCCCAATGGGCCTTTGTCTGAGACGATAAACGAAAAATCAAAAATGTC
AAATGTTGGTTCAAATTTTGGTAAATTGTATCAATTCTTTGAAAAAATTG
ACTCTGGTTATACAAGGACCAAAGAATGCAGCTTGGGAGGAACAAATAAC
GGTGCAGCTAGTAACAACAGTTTTAAAACCAAATCAAACTGATAAGCCTT
TTCGCCGCCCGCTAACGATGTTTTCTTCAGAAACATTCAAACTTTGATTA
AAAAGGAAAGAACTGCAGGGTACCCAGGCTCCCCTTTGGCGCAAGTTGTT
TTCTTGAATGAGAATGTTTTAAAAAGAATTTAAACATATAGTAAAATGAT
AGTCGTTTGGAACGTTTATTACATACAGATTAGTGGACGTTAAATTTATG
ATATTCCAGAAAAGAATAAAAGAGGGGGAAACGATGAGGAGGGTAGAAGA
TTTCTCAAGTTACAAAAGGAGCCGGGAAAATTTTGTAAGAGAAAAACTGA
AGAATTTCTAATCGGTAGTCGACTACAGAATTTTTCGGAAAATTTTGGTC
AAAAATCTGTAAAAAAAGTTTGAATAAATAATTGGGAATATAGCTCAAGA
TTTGACATAAAAAGAAAGCTTGAGTGTGTAATTCATACAACCATGTTTGA
GATTCACGAAGAAAAGGTTGGCTTGTTACCTTCTCACAGTGAACAAGAGA
AATGCTACAAAAAGCAAGTCACTTTCGATGATGACTTGTGCTGTAACGAA
GGTATAAAATTGAAAATAAATCTCAATAAAGTATAGGGGTAGAGCATTGA
AACAAAAATGTTGTCTGAAATGCCCTTTTCCCTTCTTTTCAGGGTCGGAC
GGTCACCTACGGAATGGGAAGACACCAGACGACAATAACAACAAAAGCAA
CACAAGCCTCAAGAATGGAGTTGGGGCCAAAGGTCTTCCAAACTCACGAC
AGAAGCATCGAACGAAGCGAATACAGAGACGAAATAATGTCAACATAAAG
CATAGTTCTGCCGGTGAATTTGATGCCAATCAAGTCAAACGCTTCATATT
CTTACAATCCCGTATTTACTGGCTTTCCTCTTTAATCGGTGATCGACAAA
GACCCTACAATTCCACCAAAGGAGTCTTGGGACTTATGTTATGGATATTC
AATTTAACTATTCATTTCGCATTAGACTTTTATGAAGCGAATACAGTGTT
TCATGTGAGTTGGGCTTCATCTATTGGTGTTTTCCTCGTCATGTTTATAA
TATCGACCATCTTTTTAATAAGACACACTGTTCGTTGGTTCATCAAGACC
TTGAAAAAGCTGTCAAAAGACAAAATATACTGCAAAACATTCGTTAAATT
GAGTTTCATTTTCAAGGTAAGCTACAAGCATTCGTTCATTCCTCTTTTCA
CTTTTAATGACAATTAAAGGTCATCAGTATATGGCTTAGAACTTTTCGGC
CTCATTTTTTGCTGGCTAGCTGATCTGAGTGAGGAGGGGGGATGAAAAGG
AATGGTGAGATAGAAAGTGTGTTTTACAAACCCTGGGATAACTGATTGTA
TCAAATGAAAGTAATATCATGTAAAAGTAGTGGTCAAGGCGACGATAAAG
CTCAAAACAAAACTTCATGTACTATTCAAATCGATCTTTAGAATAGCCTT
CGATTCACACTTCTATCTTTTTTTATTGCAGCTATCACCATATGCAATGT
TTATACTCTCCGTCTCGGGGGCTGGGGCGCAGTATGGTTGCTATGCTTAC
GATGATGCATTGACTGTCTCTTTCACAAAAGCAGGGCCAAACGGAACGAA
AGTGGAATTGGTGCCTAATGCTGCTCACATTGTGATCAACGTTGCACGTT
TCACAAGTCTCATGCACATTTATTATATGATGTTCTTGTTGTTAGGGTTC
GCTCTCATCATATTTTTCACAATAGTACACACGCAAAGACTCTTCAATGG
TACGTGCTATCTTCTTTTTACCCTTTTACGGGTGAACAAGTTTCTTCACA
ACTTTTTCAACGTTAAAACAATTTTGAAATTTTGATTTGAAAGCAATTTA
GATGAGAAATGTTGTGAAAAATAGGGCTCGATAAAAACTTCGTGATAAAG
GATGGTGAAAGCAAACAAAACATACAAGCAAAGACCCCCACTATTTGAGA
TATATAGGCGGAGAAAGGATTACTCTGGATTAAATACTTTAGAGAGGATA
TTATTAAACATAATCCTGTTCGTTTCCAATCAAAACAATGTTGTCGTCGG
TGTTAATGAACAGATTTGATTCACTATTAATCTTCAAAGGTTTGTAGTAG
ATTGACAAATATAATAATGGTAGTGAATAAAAAAAATCAAGCGTGATCTG
AGGGACGATGATCACATTACGATAACCTTCTTCTCTCTTCCTTCATAGCA
CACATTGGGAACGAACTGAAAGCACACCCTCCGTCGATGACTTTCCAAGA
AGCAGTAGACGATGTAGCAATGCGAACCAAATTGTTAAGAAGTGCTTCCG
AAAATACCACGGTAAGTCTCGGAGATTCTCTACTCGAAATGTCTGTAAAA
ACAAGTAGTTTTTCAATTAAGTTTAAATTATTCATTGACATTTGAAGAGG
TCACAGTTAGACTGCTATTTTAAATAGTCCCAATTTTACATTGACCATCT
TTTTGATTTCAGATTATCTTCTCGACGCTTCTATTGGCAACCAGCTTATC
CTTCGTCGTGAACGCATACAACTTTCTATTCATTAAACGTTACGCTATTT
ATATTTGGTTTGCCATCGCTCCTCTCATATGGACAGTCTCAATTCTGATT
GGGTCAGCCTTTGTGACGTCATCCTACCAAAAGCTAAAACTAGTAGTCAT
GCAGTCATGGGTAGAGATACCAGAGAAGTATGATGAGCTGTGGAGTAGAC
GAACTACCTCTAATAGAATCAATACAGCAGCATCTATAAGAAAACCCACC
TTAGATTGGCGCGCCGGTCTTGAAAACATGCGGCGTCGAAAGGCCGAACG
CGAGGCCACCGAACACGCTGCTATGGAGGAGGAAGTTTTTGAGAAGGAAG
ATCTAAAAGAGAACTGTGTCGTTGATATTAACGAAGAGATGGTTAATGAA
CAGATCAATGTCGATAAAGAAAACGAAAAGAAAGAAAGTGTGTTTTCAAA
GACCGTTCGAAATATCAACCTTTTAAATAAATTCATCAAAGGTGCAAGCG
ACAAGAGTGCCGACGAGATCGAAATGGGAGCTGAAGAAGTTAGAAAATCA
CTCTATGACAATGTGGAACAACAAAAAGATACTTTGACTGTTGAGCAATC
AGCGACAGGTGAAGAAAGCTCGTACAAAAGTGGTGAAGAGTTTCGTGAGA
CCACGGAAACAGGTGACCAGTTAACTGTCCCTTCTTCTGATGCTGCTCTT
TACAGTGATAATCCCATTGTTAACGAACAAATACGTTTGAAAGAAGTGCA
AGAATTGAGAAAACAGTCTATAGCCAGTGAAAACAAAGAAAACGACTCTT
CGGCCTGGAAAAAGATTCCGCGTATAAAATTTCGTAAAGCTACTAAACCA
AACATTGAAATTGATAGGACTAGGGAAGAAATATCCACGTTTGAAAAGGA
GAACAGCAAAAACGACGAGGGGCCGCAAAGGACTAACAGCGTTAAATTCG
ATAAAGTGGTGCGCCTTGCACAGCAAGTCAACAAGTTCACAGACAACACA
AAAAGGCAACAAATAAGACGAAAGTTCAATTATGAAAAGTACATCAAATA
TCTGGAATTGACTTTAGATACTGTGGGATTTTCTTTGGGTAAAGTGACGA
TTACTTGGGACCGCGTTTCTTTCTTTATCGTTCTTTTAATGACCCTGGTG
GGTGTGTTTGCTCAGAACGCATTCCTCAAGTAATCAACAGTGAAGGCGAT
CGAAATAACTAAGATATAAATGATTCATTCAAACAATGATCTAACGACGG
TGCATGTGCTCATGTTACCGAAATGCATTTTCTTATCAAGATTCCGATAT
CAACCCTCCTCGCGTTATTGTAGTTTCAATTTCATAGAATTATTTTTAAA
ATTTTTTGTAGATAATGGTTCTTTTACTTCTTTTTTACGCATGTACATTT
CAGTGAGAATTCAAATTCAAAAAGAAACAACGACTTACAGAAATCTTTGG
ACAACACTTATCTTCTTTACACGTGCAAGTATGAAAATAATGTGCAGTTA
AAATCTACCCAATCCAGTTGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00018580-exon-sc0000301-1575043694:209665..209883 | TCONS_00018580-exon-sc0000301-1575043694:209665..209883 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1575043694:205568..206091 | TCONS_00018580-exon-sc0000301-1575043694:205568..206091 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1575043694:204985..205252 | TCONS_00018580-exon-sc0000301-1575043694:204985..205252 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1575043694:204423..204535 | TCONS_00018580-exon-sc0000301-1575043694:204423..204535 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1575043694:202711..204271 | TCONS_00018580-exon-sc0000301-1575043694:202711..204271 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1510915933:209665..209883 | TCONS_00018580-exon-sc0000301-1510915933:209665..209883 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1510915933:205568..206091 | TCONS_00018580-exon-sc0000301-1510915933:205568..206091 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1510915933:204985..205252 | TCONS_00018580-exon-sc0000301-1510915933:204985..205252 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1510915933:204423..204535 | TCONS_00018580-exon-sc0000301-1510915933:204423..204535 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1510915933:202711..204271 | TCONS_00018580-exon-sc0000301-1510915933:202711..204271 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1491911889:209665..209883 | TCONS_00018580-exon-sc0000301-1491911889:209665..209883 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1491911889:205568..206091 | TCONS_00018580-exon-sc0000301-1491911889:205568..206091 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1491911889:204985..205252 | TCONS_00018580-exon-sc0000301-1491911889:204985..205252 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1491911889:204423..204535 | TCONS_00018580-exon-sc0000301-1491911889:204423..204535 | Clytia hemisphaerica | exon |
TCONS_00018580-exon-sc0000301-1491911889:202711..204271 | TCONS_00018580-exon-sc0000301-1491911889:202711..204271 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000301 | supercontig | sc0000301:202711..209883 - |
Blast
The following BLAST results are available for this feature:
|