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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018517 ID=TCONS_00018517|Name=TCONS_00018517|organism=Clytia hemisphaerica|type=transcript|length=7857bpRun BLAST on NCBI transcript from alignment at sc0000301:217343..252636+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018517 ID=TCONS_00018517|Name=TCONS_00018517|organism=Clytia hemisphaerica|type=transcript|length=35294bp|location=Sequence derived from alignment at sc0000301:217343..252636+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018517 vs. Swiss-Prot (Human)
Match: CAC1A (Voltage-dependent P/Q-type calcium channel subunit alpha-1A OS=Homo sapiens GN=CACNA1A PE=1 SV=2) HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0 Identity = 376/821 (45.80%), Postives = 537/821 (65.41%), Query Frame = 1
Query: 3376 KPIVQQNSLFLLSPSNRFRRICHNIVHFRYFDWIIMLVILMSSITLAIEDPVHDDAPRNEILQYFDYFFTTVFGLEVILKVIDRGLVLHKRAYLRSFWNCLXGLVLHKRAYLRSFWNCLDAFVFACNLTSIILAKTAIGSNQSTVTQXXXXXXXXXXXXPLKTIQRVRKLKVVFQCMIYSLKNVTFVLIITYLILFIFACIGVQLFQGKFYYCTDPSKITKEECQGSFYKFESATSVADNDPEVKERKWTRQRFHFDNIYEAFLTLYISSTGEGWPGSMHNTIDATQIGQGPVVNNNPHXXXXXXXXXXXXXXXXXXXXXXXXXLTFQRQGEKEIEG-GLDRNQRDCLQFVLNASPQQRFMPSDKKSLSYHVWYVVDSKPFEYFIMLLIVLNSVQLMMKYNKMSESYASMLTALNLTFTVLFCIEAALKLTAYG-LNYFRDLWNVFDLLVILGSCADLIIFFNESEF--DFIDVSTFRLCRAARIVKLLRKGESIRIMLWTFLQSFKALPYVTVMLLLLFYIYAIIGMQMFGKIALGKVNVV------EIHEYNNFRGLIQALQVLFRTSTGESWNNLMYECYSHALCDK--AIATKDNETCGNTIFAQMYFTTFIFFSMFLLLNLFVAVIMDNFEYLTRDQSILGPHHLQEFVRCWSEFDPQATGTIHHEKVFNVLCQLSPPVGFGKQCPREIAYKRLIRMNMPVDKDGVSVAFHTTLLALIRTSLDIYVSGNMFDN---DKELRRVMESIWPKDCHKHLSKLLPKMKGNGKQLTIGKMYCVKLIILKYRRSKGK--QSLTTKKEHSPSVLTRLNSLLPS 5787
KP+ +S+F+LS +N RR+CH I++ RYF+ I++VI MSSI LA EDPV +APRN +L+YFDY FT VF E+++K+ID GLVLH+ AY R WN LD V + L + + G + +T+ + + + PLKTI+R+ KLK VF C++ SLKNV +LI+ L +FIFA + VQLF+GKF++CTD SK +++C+G + +E N+ + ++R+W + FH+DN+ A LTL+ STGEGWP + +++DAT QGP M I+Y V+ V+F F +NI++ALII+TFQ QG+K +E L++N+R C+ F ++A P R MP +K+S Y +W V S PFEY IM +I LN++ LMMK+ S +Y + L N+ FT LF +E LK+ A+G LNYFRD WN+FD + +LGS D+++ +EF +FI++S RL RAAR++KLLR+G +IRI+LWTF+QSFKALPYV +++ +LF+IYAIIGMQ+FG I + + +I E+NNFR QAL +LFR++TGE+W+N+M C S CDK I T++ CGN FA YF +FIF FL+LNLFVAVIMDNFEYLTRD SILGPHHL E+VR W+E+DP A G + + ++ +L +SPP+G GK+CP +AYKRL+RM++PV D +V F++TL+ALIRT+LDI ++ D D ELR+ M +IWP K L L+ K LT+GK+Y +I+ YR+SK K Q++ +++ +P + R+ P+
Sbjct: 1216 KPMPPYSSMFILSTTNPLRRLCHYILNLRYFEMCILMVIAMSSIALAAEDPVQPNAPRNNVLRYFDYVFTGVFTFEMVIKMID------------------LGLVLHQGAYFRDLWNILDFIVVSGALVAFAFTGNSKGKDINTIKSLRVLRVLR----PLKTIKRLPKLKAVFDCVVNSLKNVFNILIVYMLFMFIFAVVAVQLFKGKFFHCTDESKEFEKDCRGKYLLYEK------NEVKARDREWKKYEFHYDNVLWALLTLFTVSTGEGWPQVLKHSVDATFENQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKMMEEYSLEKNERACIDFAISAKPLTRHMPQNKQSFQYRMWQFVVSPPFEYTIMAMIALNTIVLMMKFYGASVAYENALRVFNIVFTSLFSLECVLKVMAFGILNYFRDAWNIFDFVTVLGSITDILV----TEFGNNFINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIGIDVEDEDSDEDEFQITEHNNFRTFFQALMLLFRSATGEAWHNIMLSCLSGKPCDKNSGILTRE---CGNE-FAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEYVRVWAEYDPAAWGRMPYLDMYQMLRHMSPPLGLGKKCPARVAYKRLLRMDLPVADDN-TVHFNSTLMALIRTALDIKIAKGGADKQQMDAELRKEMMAIWPNLSQKTLDLLVTPHKST--DLTVGKIYAAMMIMEYYRQSKAKKLQAMREEQDRTPLMFQRMEPPSPT 1997 HSP 2 Score: 505.368 bits (1300), Expect = 2.062e-144 Identity = 337/761 (44.28%), Postives = 481/761 (63.21%), Query Frame = 1
Query: 655 SLTDDIPVKKEYY----ALFCLSPSNPIRRLAINITEAKLFDYFILMTILFSCIVMAIDAPLPENDKSSMNVVAGQIEYYLLGIFGFEALLRIIAMGFIMHPHSYLRSVWNVLDFVVVIFGIVTLDDIFISESGFNIKALRMVRVLRPLKLISGIPSLQVVMMSIVRAXXXXXXXXXXXXXXXXXXXXXXXXXXYDRFHYSCWSAVTKSFDG---LPCDKNIDQRKYFTYGRRCPVNTTCEPNWPGLNHGITNFDNIFLSIITVFQCLTMEGWSQVMYYTFYNADEYGYIYAF-YYITLIVIGSFFMLNLVLGVLSGEFAKEREKVENRRAFLKLRQENLISSVCESYLNWISKGEDIMILEEKP--AESHHLSSSERGKSIY----------HAGNHTGNGNVIVQTYSNGQLXXXXXXXXX--XXKLDQLKLYIXXXXXXXXXXXXXEYFFWLVISMVAINTVIMATKHYEQPDWLTNVQSNAENVFVVIFTFEMLLKIFAHGFFGYCRSLFNIFDXXXXXXXXXXXXXRRINDNFSYGLSVLRCLRLLRAFKVTKYWSSLRNLVASLMNAMNAXXXXXXXXXXXXXXXXXXGMQLFGGRFVKLETLPRTNFDTFKDAFLTVFQVITGEDWNAVMYDGMRVYGATSATGIAIAFIYFFFLVIFGNYTLLNVFLAIAVDNLTNAEILTHD---EEAAESKRMTNNIQQAFEYDETLGMNALSFVNNLQARVEGERLSIRASEQSSFDQQDGDENSLSNEE 2862
+L + IPV++ +LF S N +R+ A ITE F+Y IL TI+ +CIV+A++ LP++DK+ M+ E Y +GIF FEA ++IIA+GF H SYLR+ WNV+DFVVV+ GI+ + F+++ LR VRVLRPLKL+SGIPSLQVV+ SI++A++PLLQ+ L+ F I+IF+IIGLEF +FH +C+ T G PC R CP T C+P W G N+GIT FDNI +++TVFQC+TMEGW+ ++Y + D G + + Y+I LI+IGSFFMLNLVLGVLSGEFAKERE+VENRRAFLKLR++ I Y+ WISK E++++ E++ + H + R +I A + + + ++ + ++ N + K +++ YI + +VK + F+W V+S+VA+NT+ +A HY QP+WL++ AE +F+ +F EM +K++ G Y S FN FD V++ SI E+I I S+G+SVLR LRLLR FKVTKYW+SLRNLV SL+N+M +I+SL+FLLFLFIV+++LLGMQLFGG+F E P TNFDTF A +TVFQ++TGEDWN VMYDG++ G G + IYF L +FGNYTLLNVFLAIAVDNL NA+ LT D EE A ++++ +Q+A E E ++A + ++ + + ++ + EQ + + + +N L++ E
Sbjct: 60 ALYNPIPVRQNCLTVNRSLFLFSEDNVVRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPDDDKTPMSERLDDTEPYFIGIFCFEAGIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGILA-----TVGTEFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILIFAIIGLEFYMGKFHTTCFEEGTDDIQGESPAPCGTE-------EPARTCPNGTKCQPYWEGPNNGITQFDNILFAVLTVFQCITMEGWTDLLYNS---NDASGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENRRAFLKLRRQQQIERELNGYMEWISKAEEVILAEDETDGEQRHPFDGALRRTTIKKSKTDLLNPEEAEDQLADIASVGSPFARASIKSAKLENSTFFHKKERRMRFYI-------RRMVKTQAFYWTVLSLVALNTLCVAIVHYNQPEWLSDFLYYAEFIFLGLFMSEMFIKMYGLGTRPYFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSFGISVLRALRLLRIFKVTKYWASLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFDEGTPPTNFDTFPAAIMTVFQILTGEDWNEVMYDGIKSQGGVQ--GGMVFSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEQEEEEAANQKLA--LQKAKEVAEVSPLSAANMSIAVKEQQKNQKPAKSVWEQRTSEMR--KQNLLASRE 792 HSP 3 Score: 104.375 bits (259), Expect = 9.387e-22 Identity = 58/155 (37.42%), Postives = 88/155 (56.77%), Query Frame = 1
Query: 688 YYALFCLSPSNPIRRLAINITEAKLFDYFILMTILFSCIVMAIDAPLPENDKSSMNVVAGQIEYYLLGIFGFEALLRIIAMGFIMHPHSYLRSVWNVLDFVVVIFGIVTLDDIFISESGF----NIKALRMVRVLRPLKLISGIPSLQVVMMSIV 1140
Y ++F LS +NP+RRL I + F+ ILM I S I +A + P+ N + N V +Y G+F FE ++++I +G ++H +Y R +WN+LDF+VV +V F S IK+LR++RVLRPLK I +P L+ V +V
Sbjct: 1221 YSSMFILSTTNPLRRLCHYILNLRYFEMCILMVIAMSSIALAAEDPVQPN--APRNNVLRYFDYVFTGVFTFEMVIKMIDLGLVLHQGAYFRDLWNILDFIVVSGALVAF--AFTGNSKGKDINTIKSLRVLRVLRPLKTIKRLPKLKAVFDCVV 1371 HSP 4 Score: 94.3597 bits (233), Expect = 1.043e-18 Identity = 76/277 (27.44%), Postives = 136/277 (49.10%), Query Frame = 1
Query: 4450 FMPSDKKSLSYHVWYVVDSKPFEYFIMLLIVLNSVQLMMKYNKMSESYASMLTALNLTFTVLFCIEAALKLTAYGLN---YFRDLWNVFDLLVILGSCADLIIFFNESEFDFIDVSTFRLCRAARIVKLLRKGESIRIMLWTFLQSFKALPYVTVMLLLLFYIYAIIGMQMFGKIALGKVNVVEIHEYNNFRGLIQALQVLFRTSTGESWNNLMYECYSHALCDKAIATKDNETCGNTIFAQMYFTTFIFFSMFLLLNLFVAVIMDNF---EYLTRD 5262
F ++ + +++ +V ++ F + ++ L+ LN++ + + + E + L F LF E +K+ YGL YF +N FD VI+GS ++I + F +S R R RI K+ + S+R ++ + L S K++ + +L L ++A++GMQ+FG G+ N E NF A+ +F+ TGE WN +MY+ I ++ G +F+ +YF F + LLN+F+A+ +DN + LT+D
Sbjct: 468 FFHKKERRMRFYIRRMVKTQAFYWTVLSLVALNTLCVAIVHYNQPEWLSDFLYYAEFIFLGLFMSEMFIKM--YGLGTRPYFHSSFNCFDCGVIIGSIFEVIWAVIKPGTSF-GISVLRALRLLRIFKVTKYWASLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFG----GQFNFDEGTPPTNFDTFPAAIMTVFQILTGEDWNEVMYD---------GIKSQGG-VQGGMVFS-IYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKD 726 HSP 5 Score: 88.9669 bits (219), Expect = 3.581e-17 Identity = 90/325 (27.69%), Postives = 148/325 (45.54%), Query Frame = 1
Query: 3319 GMLNVLKFNVGNRRRILK-KKPI-VQQN------SLFLLSPSNRFRRICHNIVHFRYFDWIIMLVILMSSITLAIED--PVHDDAPRNEILQYFDYFFTTVFGLEVILKVIDRGLVLHKRAYLRSFWNCLXGLVLHKRAYLRSFWNCLDAFVFACNLTSIILAKTAIGSNQSTVTQXXXXXXXXXXXXPLKTIQRVRKLKVVFQCMIYSLKNVTFVLIITYLILFIFACIGVQLFQGKFYYCTDPSKITKEECQGSFYKFESATSVADNDPEVKERKWTRQRFH----------FDNIYEAFLTLYISSTGEGWPGSMHNTIDAT 4233
G + K ++ R R + PI V+QN SLFL S N R+ I + F+++I+ I+ + I LA+E P D P +E L + +F +F E +K+I G HK +YLR+ WN +D F LT I+ +G+ T LR +RVLRPLK + + L+VV + ++ ++ + + ++ + + IFA IG++ + GKF+ T + ++ QG ES +P T+ + + FDNI A LT++ T EGW ++N+ DA+
Sbjct: 43 GAQRMYKQSMAQRARTMALYNPIPVRQNCLTVNRSLFLFSEDNVVRKYAKKITEWPPFEYMILATIIANCIVLALEQHLPDDDKTPMSERLDDTEPYFIGIFCFEAGIKII------------------ALGFAFHKGSYLRNGWNVMD---FVVVLTGIL---ATVGTEFDLRT-----LRAVRVLRPLKLVSGIPSLQVVLKSIMKAMIPLLQIGLLLFFAILIFAIIGLEFYMGKFH--TTCFEEGTDDIQG-----ESPAPCGTEEPARTCPNGTKCQPYWEGPNNGITQFDNILFAVLTVFQCITMEGWTDLLYNSNDAS 331 HSP 6 Score: 86.6557 bits (213), Expect = 2.089e-16 Identity = 74/277 (26.71%), Postives = 132/277 (47.65%), Query Frame = 1
Query: 1942 FFWLVISMVAINTVIMATKHYEQPDWLTNVQSNAENVFVVIFTFEMLLKIFAHGFFGYCRSLFNIFDXXXXXXXXXXXXXRRINDNFSYGLSVLRCLRLLRAFKVTKYWSSLRNLVASLMNAMNAXXXXXXXXXXXXXXXXXXGMQLFGG----------RFVKLETLPRTNFDTFKDAFLTVFQVITGEDWNAVMYDGMRVYGATSATGI-------AIAFIYFFFLVIFGNYTLLNVFLAIAVDNLTNAEILTHDEEAAESKRMTNNIQQAFEYD 2721
F + +++M+A+NT+++ K Y N VF +F+ E +LK+ A G Y R +NIFD + VL SI ++++ +NF LS LR R R K+ + ++R L+ + + + A+ + L+ + I++++GMQ+FG + + NF TF A + +F+ TGE W+ +M + +GI A+ YF + ++ +LN+F+A+ +DN E LT D + ++ EYD
Sbjct: 1568 FEYTIMAMIALNTIVLMMKFYGASVAYENALRVFNIVFTSLFSLECVLKVMAFGILNYFRDAWNIFDFVTVLGSITDILVTEFGNNF-INLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGNIGIDVEDEDSDEDEFQITEHNNFRTFFQALMLLFRSATGEAWHNIMLSCLSGKPCDKNSGILTRECGNEFAYFYFVSFIFLCSFLMLNLFVAVIMDNF---EYLTRDSSILGPHHLDEYVRVWAEYD 1840 The following BLAST results are available for this feature:
BLAST of TCONS_00018517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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