TCONS_00018498 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018498
Unique NameTCONS_00018498
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1076

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018498 ID=TCONS_00018498|Name=TCONS_00018498|organism=Clytia hemisphaerica|type=transcript|length=1076bp
TGTTACTGGTCCAAACATAACAATATATGACAAGTTCTCCTTCACTGAAA
TGACGTTGAATTGGTCGACTTTATCGTATGCAGATTCACAGGGGACAGTT
TTGGATTATAACATCATTTATTATCCAGTCAGAAGGAATGGTATTGATCT
AGCTCCCGTTGATCAGGATGTGACAAGCCTTTGGTTCGAATTTCCAACAC
AAGGTGTCGAGCTTAACAATCTCGAACCTTTCGTCACTTACGCCTTCCAA
AGTGCTGCACAGACATTCGCTGGACCCGGAACTTTCTCAAAGCCTTTTTA
TGCAGAAACCTGCCGTtgcgaaaaaaacttcaaagcaGTCTATCGAAATC
ACATGCCGTACTTCGGAATAGAAAACGGGGAACAAATCGGATTACTGAAG
AACGTTGTAACCGAAGCAACCAATCTCTGTTGTGGAAATTGTTCGAATGG
GCATGGGACCACAAATATCATCTGGGAAAGTCCCATGACGAGTGTCAGCG
AGTTAAATGATGCCATTTTTGATGATACCGACTTCGTGTTGCCAATAGAA
ACGGATAAAATAAACACATACTACAAAAGTAGACCGTTTGTCGGGATTTT
GGATAGCCCAGGAGTTTCCGTATTTTCGCTGAAAGTTGAATATTTGAATT
TGACGAATAATATGATTTTGAATGGAGTGTTGATTTTGTGGTCTTTTGTG
GTGATTGTTGCTTTAATAGTGATGGCTCTTGGATTGATCATGTGGATTGT
CCAATGTCATCCACTTCAACTGAACCGAACGAATAAAGAAGCCTTCCCTG
ATACTTTTTCCCATGGCGCTGGCGCTGGACTTTGGTGGGCTTTCAATACA
GTTCTCCGTATTGGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCG
CATTTTTTCTATTCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACAT
TAATTGCCGGTGTTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACT
GAAGGGAGCATCTTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGA
TCAATTGGTCATCAAACGGATGGCTG
Run BLAST on NCBI

transcript from alignment at sc0000301:148221..152332+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018498 ID=TCONS_00018498|Name=TCONS_00018498|organism=Clytia hemisphaerica|type=transcript|length=4112bp|location=Sequence derived from alignment at sc0000301:148221..152332+ (Clytia hemisphaerica)
TGTTACTGGTCCAAACATAACAATATATGACAAGTTCTCCTTCACTGAAA
TGACGTTGAATTGGTCGACTTTATCGTATGCAGATTCACAGGGGACAGTT
TTGGATTATAACATCATTTATTATCCAGTCAGAAGGAATGGTATTGATCT
AGCTCCCGTTGATCAGGTAAAGGTCATTTTTTGTGACGGTGGCAAATTGT
TGTTCTACGGATCAAACTCAACATGAAATGGTAGCAATAATGACAAATTT
ATAAAAGCAAGATTATAACAAGATAATAATATAGGGTAATATTAGGGTCA
GGTATCAAATTGCAACCTCAGAAGGTAGGAATTTTAGTGATGTGAGTTAT
GTTCTCATTTTCAGGATGTGACAAGCCTTTGGTTCGAATTTCCAACACAA
GGTGTCGAGCTTAACAATCTCGAACCTTTCGTCACTTACGCCTTCCAAAG
TGCTGCACAGACATTCGCTGGACCCGGAACTTTCTCAAAGCCTTTTTATG
CAGGTAATTTTTTCTACAATAGCTATTCCAATCAAATTTAAACAAGAACT
CGGAGTTGGAACTTCAAAGATCGAAATTCTCTTTGCCCAAAATAAAAAAG
GCTGTTATAGACaatgataaaatattggaaTGTTTTTTAATGAACTTTCT
CTCTCAAAATTACAAGGGTCGGCTTGTCGAAAATAGGCCTATTTTGCGCG
CCTTTTATTTTCGCGCACGTATTCTACGCGAAAATTAAAGGGGTGCGAAA
ATTATGAAACCTTCCTTTTTGATTTTCGTTTATTTATGTTTTGCTTGctc
atttctaaattttgccAGAAACCTGCCGTtgcgaaaaaaacttcaaagca
GTCTATCGAAATCACATGCCGTACTTCGGAATAGAAAACGGGGAACAAAT
CGGATTACTGAAGAACGTTGTAACCGAAGCAACCAATCTCTGTTGTGGAA
ATTGTTCGAATGGGCATGGGACCACAAATATCATCTGGGAAAGTCCCATG
ACGAGTGTCAGCGAGTTAAATGATGCCATTTTTGATGATACCGACTTCGT
GTTGCCAATAGAAACGGATAAAATAAACACATACTACAAAAGTAGACCGT
TTGTCGGGATTTTGGATAGCCCAGGAGTTTCCGTATTTTCGCTGAAAGTT
GAATATTTGAATTTGACGAATAATATGATTTTGAATGGAGTGTTGATTTT
GTGGTCTTTTGTGGTGATTGTTGCTTTAATAGTGATGGCTCTTGGATTGA
TCATGTGGATTGTCGTAAGtcgaagtttttgaaaatgtcctCGTTCTTTG
AATTATGTATGATGAGATACTTATTAAATTACTCTCATTGAGCCTGCTTA
AACCTGAAATCATTTCATTTTCTCTCTTCGTAGCAATGTCATCCACTTCA
ACTGAACCGAACGAATCAAGAAGCCTTCCCTGATACTTTTTCCCATGGCG
CTGGCGCTGGACTTTGGTGGGCTTTCAATACAGTTCTCCGTATTGGGCAA
GTCTTTAAATTACGCTTTTAAAGCCATTTCAAATAAGACGTTTACAAGAA
GTTTCTAAACGCCCAATCACGTCACTCTTACCATACAATTTTGAGCTTCG
TCAATTGCTAGGGAAATACCAAAtgattaaaaattgatttttcttccTAT
CTAGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCGCATTTTTTCT
ATTCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACATTAATTGCCGG
TGTTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACTGAAGGGAGCA
TCTTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGATCAATTGGTC
ATCAAACGGATGGCTGGTATCATCTCAGAAAGTAAGTTCGTCCTCATGTA
GTCTGAATGGCAGACCCCCGGGTAGTAAGAGGCACGATAAGGAGCACCAA
TGCGTTAGTGGATGTCAGCAGCCTACCTCATGTGTATTTACAGTTTGTAA
TCTCCTGCTCtcttaaaatgtaattttgCTAACAATCATCCTTTGAAATT
TTCCCTCAATAGCGGCTGGTGACACAGTGGAATTGATTGAAGTTTTACGT
AGCAAACGTGTCGATAGAATGGCCGTTGATGCAATTTATGCTGCCTATCA
TTCCGAAAAGATGTCTGATCCTGACGTCATCTTCAGAGGTATCAAAGAAT
CAGGCGCTACTCAAGGCATTGTCTTCGGTGGCAGAGCTTTGAGATTGGAG
AAATGTTTTNGGCGATTGTTGCTTTAATAGTGATGGCTCTTGGATTGATC
ATGTGGATTGTCGTAAGtcgaagtttttgaaaatgtcctCGTTCTTTGAA
TTATGTATGATGAGATACTTATTAAATTACTCTCATTGAGCCTGCTTAAA
CCTGAAATCATTTCATTTTCTCTCTTCGTAGCAATGTCATCCACTTCAAC
TGAACCGAACGAATAAAGAAGCCTTCCCTGATACTTTTTCCCATGGCGCT
GGCGCTGGACTTTGGTGGGCTTTCAATACAGTTCTCCGTATTGGGCAAGT
TTTTAAATTACctttttaaagccattttaAATAAGACGTTTACAACAAGT
TTCTAAACGGCCAATCACGTCACACTTACCATACAATTTTAAGCTTCGTC
AATTGCGAGGGAAATACCAAATGattaaaaactgatttttcttcCTATCT
AGATACGGGGACATCGTTGCAACTGGAAAACTCGGTCGCATTTTTTCTAT
TCCAATAATCGCTGTAGGAATTGCAATAAGTGCTACATTAATTGCCGGTG
TTTCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACTGAAGGGAGCATC
TTTTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGATCAATTGGTCAT
CAAACGGATGGCTGGTATCATCTCAGAAAGTAAGTTCGTCCTCATGTAGT
CTGAATGGCAGACCCCCGGGTAGTAAGAGGCACGATAAGGAGCACCAATG
CGTTAGTGGATGTCAGCAGCCTACCTCTTGTGTATTTACAGTTTGTAATC
TCCTGCTCtcttaaaatgtaattttgCTAACAATCATCCTTTGAAATTTT
CCCTCAATAGCGGCTGGTGACACAGTGGAATTGATTGAAGTTTTACGTAG
CAAACGTGTCGATAGAATGGCCGTTGATGCAATTTATGCTGCCTATCATT
CCGAAAAGATGTCTGATCCTGACGTCATCTTCAGAGGTATCAAAGAATCA
GGCGCTACTCAAGGCATTGTCTTCGGTGGCAGAGCTTTGAGATTGGAGAA
ATGTTTTAGGAAATATTTTCATGATAAAAAAGTGGAATTAATTGAACGAA
TAAAAGCTATCATCGATGCGGACAAACGGGTAAGACCATTTTAATCTCAA
TAAAAGAATTTGTATTCTCTTTATTAATAAGCCCTGGCGCATGGCAGTTT
TTTTCGATTAAGAATAACTAGTCGAaatattttatctattttataACATT
CAGAAATTGGAACAGCTTGAGTTATTCGTAGACTTTCATTGACTTTGGCT
ACCGAGAAAGCCGAGAAAGCCGTGATCAGGTAAATAATTCTCATTTCACA
ATTTATCTCGCTTCAGAATTATGCGGACAGCGAATTGTTGGACAAACGAA
ATGCGATGATANAAAGAAGCCTTCCCTGATACTTTTTCCCATGGCGCTGG
CGCTGGACTTTGGTGGGCTTTCAATACAGTTCTCCGTATTGGGCAAGTTT
TTAAATTACctttttaaagccattttaAATAAGACGTTTACAACAAGTTT
CTAAACGGCCAATCACGTCACACTTACCATACAATTTTAAGCTTCGTCAA
TTGCGAGGGAAATACCAAATGattaaaaactgatttttcttcCTATCTAG
ATACGGGGACATCGTTGCAACTGGAAAACTCGGTCGCATTTTTTCTATTC
CAATAATCGCTGTAGGAATTGCAATAAGTGCTACATTAATTGCCGGTGTT
TCGTCCATCTTGTTGGCTTATTCTGTTCAAAAAACTGAAGGGAGCATCTT
TTCAAAGAAAGTTGTAGCAATGAATGAATCTTATGATCAATTGGTCATCA
AACGGATGGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010372XLOC_010372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018498-exon-sc0000301-1491911889:148221..148386TCONS_00018498-exon-sc0000301-1491911889:148221..148386Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1510915933:148221..148386TCONS_00018498-exon-sc0000301-1510915933:148221..148386Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1575043694:148221..148386TCONS_00018498-exon-sc0000301-1575043694:148221..148386Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1491911889:148585..148723TCONS_00018498-exon-sc0000301-1491911889:148585..148723Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1510915933:148585..148723TCONS_00018498-exon-sc0000301-1510915933:148585..148723Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1575043694:148585..148723TCONS_00018498-exon-sc0000301-1575043694:148585..148723Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1491911889:149039..149484TCONS_00018498-exon-sc0000301-1491911889:149039..149484Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1510915933:149039..149484TCONS_00018498-exon-sc0000301-1510915933:149039..149484Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1575043694:149039..149484TCONS_00018498-exon-sc0000301-1575043694:149039..149484Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1491911889:150652..150764TCONS_00018498-exon-sc0000301-1491911889:150652..150764Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1510915933:150652..150764TCONS_00018498-exon-sc0000301-1510915933:150652..150764Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1575043694:150652..150764TCONS_00018498-exon-sc0000301-1575043694:150652..150764Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1491911889:152121..152332TCONS_00018498-exon-sc0000301-1491911889:152121..152332Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1510915933:152121..152332TCONS_00018498-exon-sc0000301-1510915933:152121..152332Clytia hemisphaericaexon
TCONS_00018498-exon-sc0000301-1575043694:152121..152332TCONS_00018498-exon-sc0000301-1575043694:152121..152332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:148221..152332 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.14655	9.84945	3.52521	4.72932	0.259668	0	0.326639	0.703209	0.485114	1.01513	0	0.279814	9.82021	9.02794	6.85017	3.43025	0.702091	0.384699	15.9798	25.656	0.791575	0	8.22026	4.65014	1.92372	0	0.561433	0.805682	1.47457	5.61062
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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