TCONS_00018471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018471
Unique NameTCONS_00018471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018471 ID=TCONS_00018471|Name=TCONS_00018471|organism=Clytia hemisphaerica|type=transcript|length=2340bp
CTTGAGAGTAAAAGATCTGGATACATAATTTGAAATCAGCGAGGTTCAAA
GATTCAGTGATAAACAACGTTTTATTGGCATTTTGTACTTGTGTTCCTTT
ACGGAAAACAGTGCACTGATTTGCCGTGTATACTCAGGTGCCGGTCAGAA
TAGGGGGTCTAAATACCAAAATAAGGTAATAATAGATATTATAAACTGGA
GATAACTGGGGTCTTCACAGACCTAGATCGAAGGCTGATGATAATGATGA
ACGATttcgaaatcagcaaaaaggaCCCCCATTAAAAATAGCTGTGTCGT
AAGAACTGTTTGTAGCAACAATACTTCTTCAGGGAAAACTGTTCGGTTTT
CATTAGAATATCAATTGGAGTGCATTTAATCACACCATGCATAGTAGTGC
TCTTGTACAATCGTCACATACATAGCAACAACTTTTGCTTTCAACACATA
CATAAGGACTTTTGCTCTCATCTCAAAGAATACCACTTTCAGACGTTCGA
ACCAAAGACGTAATGGAAGGcacttttctttcaaatatgtTTTGGATGAT
ATTATGTTTCATATTGATTTTCAATACAGCAGTATCTGGTCGCCGTCAAA
CACCGGAAGAACGTTTACATTCTCATCTCTTTGGAGATCAACATCACGAC
TTGACGGCCTTCCCTCTGGAGAAAGGATCACTTGATTTGAATTTCCGATT
GAAGCTGTTTGGAGCTGACATTGAAACCGACACGGAGACACTTAGTGTTG
ACGTCAACTTTATCCAGAGCTGGGCAAACAAACGATTGAGTTGGAATCCG
ATGGACTTTGGCAATATTACCGATATCAACATTGATCCTGAAGCGGCTTG
GGTTCCCAATCTTTATGTGCATGGCAATCTAGAAGAGGACAAAGAGTATA
ATGGACTCCTCAGCACCCTGCTCACCAAGATCAACCTTCGACACGATGGA
GTACAAACATGGCTTGCACCCTCCACCCTTCTTCTTAAATGCGCCATCAT
TGTCAGCCATTTCCCTTTTGACACTCAGCATTGTCATTTACAATTTGGAA
GTTTTGCTTTTGACTCAAGCAAACTAAACATTAACGTCAAACCTCTGGAC
CTTGATCTTTATGAAGACAGTCCAGAATGGGAGCTGCTGGAATCTGGGCA
CGCCAAAGAATACGTCACTTACCCTGGCTCCAAGACGCCGTACACCGACG
CCCTGTACGTTCTCAAAATACGACGCAAGGCTCTGGCACCTTTGAAGGAG
CTGGTGTTTCCAAATTTAGCGCTCATCACGTTGACTATGCTTGTGTTTGT
TATTCCAACGGATGCTGGTGAACGAATCGGATACCTGTTCACCACGTTTC
TTGCCATCGCTTTCTTCATGACCGACACTATCGATACTTTACCAAGAAAT
TCTCTCAATGCACCTTTTTGTATGGTCTTTATGGGTGTCAGTACGTTGAG
TCTATCCCTACTGGCCGTCTGCTTGTGCATCAGTATCTCATGCTATTACG
CCAACACAAACCTCGTTAAACTCCCTGATAAATGTAAAACGTTTCTGAGA
AAGTCTGGCAAGTTCCTTGGTGTGAACCTGAAACGAGAGTTTGATGGATG
GCGACACATGTTGAACGAGATTCGAAATTTTGAAGAAGAGAACTTTATCG
GAAGTTGCTCGTCAGGTTCTTTACATGAAGAAGTGAAAAAGTTCGCATTG
GCATCACATACCGAACATCCGACAGAACGTGCGAAGAGTTCACCAGAACA
AACACCTGTTCAAACAAGGAAAGACAATTCGCAACACAAGTGTTCCTTAA
GCGAAGAAGAAATTGACGGAGTCGATCCTCTTTTTGAGAATCCAGAAGAT
TTAAGGTCAGTTCATGAAAGGTTGGAGATTTTGTTGTCGACTTTTGAAGA
GCAGGATGATAGCTCTTGGCGAGAAATGGAGTGGTTTCTCTTCTCACAGG
TTGTCGATAAAATCTGCTTCGTCGTTTTCACGTCTTATTTTGTGTTGTCC
CTGGTCTTCGCTGGTATACATATTTATGAGGTGTACTGATGAACTTAGTC
CAGTGGTATCACATCATTAATTTGTATGTAATGAGAGCCGGAAGTGTACC
CATATTCCGTTACTTGGACCGAAAGCGAACAAAGAGTGTAgtgtatttta
ttttctgaacaATTTTGTGGAATACACTTCTCAATttataattttgtaaa
aaaaatttaattttgaattgTGACAATaatattgtgttttttttctaata
aatttcattttgtaaaatatatttcataGAAAGTCTCGTTTTTTtcgtaa
aaatattttgaaatatacgAATAGATGTTTGACATCACTA
Run BLAST on NCBI

protein sequence of TCONS_00018471-protein

>TCONS_00018471-protein ID=TCONS_00018471-protein|Name=TCONS_00018471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=508bp
MEGTFLSNMFWMILCFILIFNTAVSGRRQTPEERLHSHLFGDQHHDLTAF
PLEKGSLDLNFRLKLFGADIETDTETLSVDVNFIQSWANKRLSWNPMDFG
NITDINIDPEAAWVPNLYVHGNLEEDKEYNGLLSTLLTKINLRHDGVQTW
LAPSTLLLKCAIIVSHFPFDTQHCHLQFGSFAFDSSKLNINVKPLDLDLY
EDSPEWELLESGHAKEYVTYPGSKTPYTDALYVLKIRRKALAPLKELVFP
NLALITLTMLVFVIPTDAGERIGYLFTTFLAIAFFMTDTIDTLPRNSLNA
PFCMVFMGVSTLSLSLLAVCLCISISCYYANTNLVKLPDKCKTFLRKSGK
FLGVNLKREFDGWRHMLNEIRNFEEENFIGSCSSGSLHEEVKKFALASHT
EHPTERAKSSPEQTPVQTRKDNSQHKCSLSEEEIDGVDPLFENPEDLRSV
HERLEILLSTFEEQDDSSWREMEWFLFSQVVDKICFVVFTSYFVLSLVFA
GIHIYEVY
Run BLAST on NCBI

transcript from alignment at sc0000300:129824..133623-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018471 ID=TCONS_00018471|Name=TCONS_00018471|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at sc0000300:129824..133623- (Clytia hemisphaerica)
CTTGAGAGTAAAAGATCTGGATACATAATTTGAAATCAGCGAGGTTCAAA
GATTCAGTGATAAACAACGTTTTATTGGCATTTTGTACTTGTGTTCCTTT
ACGGAAAACAGTGCACTGATTTGCCGTGTATACTCAGGTGCCGGTCAGAA
TAGGGGGTCTAAATACCAAAATAAGGTAATAATAGATATTATAAACTGGA
GATAACTGGGGTCTTCACAGACCTAGATCGAAGGCTGATGATAATGATGA
ACGATTTCGAAATCAGCAAAAAGGACCCCCATTAAAAATAGCTGTGTCGT
AAGAACTGTTTGTAGCAACAATACTTCTTCAGGGAAAACTGTTCGGTTTT
CATTAGAATATCAATTGGAGTGCATTTAATCACACCATGCATAGTAGTGC
TCTTGTACAATCGTCACATACATAGCAACAACTTTTGCTTTCAACACATA
CATAAGGACTTTTGCTCTCATCTCAAAGAATACCACTTTCAGACGTTCGA
ACCAAAGACGTAATGGAAGGCACTTTTCTTTCAAATATGTTTTGGATGAT
ATTATGTTTCATATTGATTTTCAATACAGGTAAGAAACTTACTTTTGAAA
CATGCTTAAGTTGACTCTTAAGTCTTACAAAAAAGAATTGTACCATACGC
TTTCCTTGGGACTGGCTGAATGTTTACCTTTTCTGCGCTAAGTTGAAACC
ATTGTTCTTTCTCTCTTCTCAAGCAGTATCTGGTCGCCGTCAAACACCGG
AAGAACGTTTACATTCTCATCTCTTTGGAGATCAACATCACGACTTGACG
GCCTTCCCTCTGGAGAAAGGATCACTTGATTTGAATTTCCGATTGAAGCT
GTTTGGAGCTGACATTGAAACCGACACGGAGACACTTAGTGTTGACGTCA
ACTTTATCCAGGTAGGTTTGGCTTAATTTTTCAGCTAAGTATATTCATTT
GACTATTTCAATCTTCTTCACCACAATTAATCCTTAGACAGGTGACAAGA
GGCGTCGTCACAAACACATTGAATCCATTATTGTGACATACATTGTTTTC
TTTTAGAGCTGGGCAAACAAACGATTGAGTTGGAATCCGATGGACTTTGG
CAATATTACCGATATCAACATTGATCCTGAAGCGGCTTGGGTTCCCAATC
TTTATGTGCATGGCAAGTAAGTGAATATATGGTGTGACTTTCGAAGGGCT
ATGATGTGGCTGTACCACAGTGCAATTTGAAGACAAAATTGAACAGAGAA
AAATATGAAAAACAAACATTTTAAGCAGAGATAAATTTCTATATTACACC
CCTGTGTCACAGACCCGCTGGGGCCCTAGGAAAAATACCCTAGAATTTCA
GCCACACTAAGAAATTGACTTTGATTTCATCCCCATTCGGAATTCGTTGT
TTAGAAATTGCACTCTAAAACCATCCTCACTGGATTTTGGGTGTTATATT
TTTACATTTTTATCTTCCATCGTTTTTTAACTTTTTGAAAATTTTTGAAA
CCTTGAATTTATTAACTCGAGATTATCTTTCCATTAAGGCGTTACTTTAA
ATTTTATTCTTCAAGAGCTACTTATCAGCATGTCCTTTGGAACAGACGTT
AGGAAGAAGCAATATTCATTGATCAACTATCAGTAAATTTTTCACACCTA
ATATTTCAGTCTAGAAGAGGACAAAGAGTATAATGGACTCCTCAGCACCC
TGCTCACCAAGATCAACCTTCGACACGATGGAGTACAAACATGGCTTGCA
CCCTCCACCCTTCTTCTTAAATGCGCCATCATTGTCAGCCATTTCCCTTT
TGACACTCAGCATTGTCATTTACAATTTGGAAGTTTTGCTTTTGACTCAA
GCAAACTAAACATTAACGTCAAACCTCTGGACCTTGATCTTTATGAAGGT
ATTTTTCATGTTTCCATCAATCCCGGTTTAGTGGTCATCTCACGGGAATA
ATAGTACCATTGAAACAAGGTAGCGCTCAAAGAAGATTCTCACTAAATAA
TCATAAAATGTAATAAAATCTTAAATTCAAAATATTCCTTTTCCCAGTGG
TATTTTAACTCCGAAAGTGGACCAGTGAGACAGAAGTGTATCGTAGCCAC
CAGGATAAGATAAAGCCAACACCCAGGAAGCACTCATTTTGTGTTATACA
ATATGTACCGTCGTCGATTAAGGCCTCTATTTCTATTTCTATTTGGTTGA
GTTGCAGGAGGCTTTGAGGCCTATTTTCGCAACTATAGACGCTTTCAATG
AGCGCCCCGTCAGCACATTGGACTGACTACCCAATTCCCCTCACATGGCA
TGGGTTGACCCGGGCGAAGGTTCATTCACTTGGTCAATGACCACTATACC
ACAGCGCCTTTTTTTCTGGAATATGCTTTCTTTGAGTGGGAATCGAACCT
ATCAGTCGCCTGTGCAGTAACCAAGGTCAATGACCACTATACCACAGCGC
CTTTTTTTCTGGAATATGCTTTCTTTGAGTACCCCTGATACCACCAGGAT
TTTAACTGGTTAAATACTCATATGAATGCAGCCTGACGTCAAAAGTCTCA
GTTTCTATTCTCTCTTTTCAAACCAGACAGTCCAGAATGGGAGCTGCTGG
AATCTGGGCACGCCAAAGAATACGTCACTTACCCTGGCTCCAAGACGCCG
TACACCGACGCCCTGTACGTTCTCAAAATACGACGCAAGGCTCTGGCACC
TTTGAAGGAGCTGGTGTTTCCAAATTTAGCGCTCATCACGTTGACTATGC
TTGTGTTTGTTATTCCAACGGATGCTGGTGAACGAATCGGATACCTGTTC
ACCACGTTTCTTGCCATCGCTTTCTTCATGACCGACACTATCGATACTTT
ACCAAGAAATTCTCTCAATGCACCTTTTTGTATGGTCTTTATGGGTGTCA
GTACGTTGAGTCTATCCCTACTGGCCGTCTGCTTGTGCATCAGTATCTCA
TGCTATTACGCCAACACAAACCTCGTTAAACTCCCTGATAAATGTAAAAC
GTTTCTGAGAAAGTCTGGCAAGTTCCTTGGTGTGAACCTGAAACGAGAGT
TTGATGGATGGCGACACATGTTGAACGAGATTCGAAATTTTGAAGAAGAG
AACTTTATCGGAAGTTGCTCGTCAGGTTCTTTACATGAAGAAGTGAAAAA
GTTCGCATTGGCATCACATACCGAACATCCGACAGAACGTGCGAAGAGTT
CACCAGAACAAACACCTGTTCAAACAAGGAAAGACAATTCGCAACACAAG
TGTTCCTTAAGCGAAGAAGAAATTGACGGAGTCGATCCTCTTTTTGAGAA
TCCAGAAGATTTAAGGTCAGTTCATGAAAGGTTGGAGATTTTGTTGTCGA
CTTTTGAAGAGCAGGATGATAGCTCTTGGCGAGAAATGGAGTGGTTTCTC
TTCTCACAGGTTGTCGATAAAATCTGCTTCGTCGTTTTCACGTCTTATTT
TGTGTTGTCCCTGGTCTTCGCTGGTATACATATTTATGAGGTGTACTGAT
GAACTTAGTCCAGTGGTATCACATCATTAATTTGTATGTAATGAGAGCCG
GAAGTGTACCCATATTCCGTTACTTGGACCGAAAGCGAACAAAGAGTGTA
GTGTATTTTATTTTCTGAACAATTTTGTGGAATACACTTCTCAATTTATA
ATTTTGTAAAAAAAATTTAATTTTGAATTGTGACAATAATATTGTGTTTT
TTTTCTAATAAATTTCATTTTGTAAAATATATTTCATAGAAAGTCTCGTT
TTTTTCGTAAAAATATTTTGAAATATACGAATAGATGTTTGACATCACTA

Coding sequence (CDS) from alignment at sc0000300:129824..133623-

>TCONS_00018471 ID=TCONS_00018471|Name=TCONS_00018471|organism=Clytia hemisphaerica|type=CDS|length=7635bp|location=Sequence derived from alignment at sc0000300:129824..133623- (Clytia hemisphaerica)
ACAGTCCAGAATGGGAGCTGCTGGAATCTGGGCACGCCAAAGAATACGTC
ACTTACCCTGGCTCCAAGACGCCGTACACCGACGCCCTGTACGTTCTCAA
AATACGACGCAAGGCTCTGGCACCTTTGAAGGAGCTGGTGTTTCCAAATT
TAGCGCTCATCACGTTGACTATGCTTGTGTTTGTTATTCCAACGGATGCT
GGTGAACGAATCGGATACCTGTTCACCACGTTTCTTGCCATCGCTTTCTT
CATGACCGACACTATCGATACTTTACCAAGAAATTCTCTCAATGCACCTT
TTTGTATGGTCTTTATGGGTGTCAGTACGTTGAGTCTATCCCTACTGGCC
GTCTGCTTGTGCATCAGTATCTCATGCTATTACGCCAACACAAACCTCGT
TAAACTCCCTGATAAATGTAAAACGTTTCTGAGAAAGTCTGGCAAGTTCC
TTGGTGTGAACCTGAAACGAGAGTTTGATGGATGGCGACACATGTTGAAC
GAGATTCGAAATTTTGAAGAAGAGAACTTTATCGGAAGTTGCTCGTCAGG
TTCTTTACATGAAGAAGTGAAAAAGTTCGCATTGGCATCACATACCGAAC
ATCCGACAGAACGTGCGAAGAGTTCACCAGAACAAACACCTGTTCAAACA
AGGAAAGACAATTCGCAACACAAGTGTTCCTTAAGCGAAGAAGAAATTGA
CGGAGTCGATCCTCTTTTTGAGAATCCAGAAGATTTAAGGTCAGTTCATG
AAAGGTTGGAGATTTTGTTGTCGACTTTTGAAGAGCAGGATGATAGCTCT
TGGCGAGAAATGGAGTGGTTTCTCTTCTCACAGGTTGTCGATAAAATCTG
CTTCGTCGTTTTCACGTCTTATTTTGTGTTGTCCCTGGTCTTCGCTGGTA
TACATATTTATGAGGTGTACTGATCTAGAAGAGGACAAAGAGTATAATGG
ACTCCTCAGCACCCTGCTCACCAAGATCAACCTTCGACACGATGGAGTAC
AAACATGGCTTGCACCCTCCACCCTTCTTCTTAAATGCGCCATCATTGTC
AGCCATTTCCCTTTTGACACTCAGCATTGTCATTTACAATTTGGAAGTTT
TGCTTTTGACTCAAGCAAACTAAACATTAACGTCAAACCTCTGGACCTTG
ATCTTTATGAAGAGCTGGGCAAACAAACGATTGAGTTGGAATCCGATGGA
CTTTGGCAATATTACCGATATCAACATTGATCCTGAAGCGGCTTGGGTTC
CCAATCTTTATGTGCATGGCAACAGTATCTGGTCGCCGTCAAACACCGGA
AGAACGTTTACATTCTCATCTCTTTGGAGATCAACATCACGACTTGACGG
CCTTCCCTCTGGAGAAAGGATCACTTGATTTGAATTTCCGATTGAAGCTG
TTTGGAGCTGACATTGAAACCGACACGGAGACACTTAGTGTTGACGTCAA
CTTTATCCAGATGGAAGGCACTTTTCTTTCAAATATGTTTTGGATGATAT
TATGTTTCATATTGATTTTCAATACAGACAGTCCAGAATGGGAGCTGCTG
GAATCTGGGCACGCCAAAGAATACGTCACTTACCCTGGCTCCAAGACGCC
GTACACCGACGCCCTGTACGTTCTCAAAATACGACGCAAGGCTCTGGCAC
CTTTGAAGGAGCTGGTGTTTCCAAATTTAGCGCTCATCACGTTGACTATG
CTTGTGTTTGTTATTCCAACGGATGCTGGTGAACGAATCGGATACCTGTT
CACCACGTTTCTTGCCATCGCTTTCTTCATGACCGACACTATCGATACTT
TACCAAGAAATTCTCTCAATGCACCTTTTTGTATGGTCTTTATGGGTGTC
AGTACGTTGAGTCTATCCCTACTGGCCGTCTGCTTGTGCATCAGTATCTC
ATGCTATTACGCCAACACAAACCTCGTTAAACTCCCTGATAAATGTAAAA
CGTTTCTGAGAAAGTCTGGCAAGTTCCTTGGTGTGAACCTGAAACGAGAG
TTTGATGGATGGCGACACATGTTGAACGAGATTCGAAATTTTGAAGAAGA
GAACTTTATCGGAAGTTGCTCGTCAGGTTCTTTACATGAAGAAGTGAAAA
AGTTCGCATTGGCATCACATACCGAACATCCGACAGAACGTGCGAAGAGT
TCACCAGAACAAACACCTGTTCAAACAAGGAAAGACAATTCGCAACACAA
GTGTTCCTTAAGCGAAGAAGAAATTGACGGAGTCGATCCTCTTTTTGAGA
ATCCAGAAGATTTAAGGTCAGTTCATGAAAGGTTGGAGATTTTGTTGTCG
ACTTTTGAAGAGCAGGATGATAGCTCTTGGCGAGAAATGGAGTGGTTTCT
CTTCTCACAGGTTGTCGATAAAATCTGCTTCGTCGTTTTCACGTCTTATT
TTGTGTTGTCCCTGGTCTTCGCTGGTATACATATTTATGAGGTGTACTGA
TCTAGAAGAGGACAAAGAGTATAATGGACTCCTCAGCACCCTGCTCACCA
AGATCAACCTTCGACACGATGGAGTACAAACATGGCTTGCACCCTCCACC
CTTCTTCTTAAATGCGCCATCATTGTCAGCCATTTCCCTTTTGACACTCA
GCATTGTCATTTACAATTTGGAAGTTTTGCTTTTGACTCAAGCAAACTAA
ACATTAACGTCAAACCTCTGGACCTTGATCTTTATGAAGAGCTGGGCAAA
CAAACGATTGAGTTGGAATCCGATGGACTTTGGCAATATTACCGATATCA
ACATTGATCCTGAAGCGGCTTGGGTTCCCAATCTTTATGTGCATGGCAAC
AGTATCTGGTCGCCGTCAAACACCGGAAGAACGTTTACATTCTCATCTCT
TTGGAGATCAACATCACGACTTGACGGCCTTCCCTCTGGAGAAAGGATCA
CTTGATTTGAATTTCCGATTGAAGCTGTTTGGAGCTGACATTGAAACCGA
CACGGAGACACTTAGTGTTGACGTCAACTTTATCCAGATGGAAGGCACTT
TTCTTTCAAATATGTTTTGGATGATATTATGTTTCATATTGATTTTCAAT
ACAGACAGTCCAGAATGGGAGCTGCTGGAATCTGGGCACGCCAAAGAATA
CGTCACTTACCCTGGCTCCAAGACGCCGTACACCGACGCCCTGTACGTTC
TCAAAATACGACGCAAGGCTCTGGCACCTTTGAAGGAGCTGGTGTTTCCA
AATTTAGCGCTCATCACGTTGACTATGCTTGTGTTTGTTATTCCAACGGA
TGCTGGTGAACGAATCGGATACCTGTTCACCACGTTTCTTGCCATCGCTT
TCTTCATGACCGACACTATCGATACTTTACCAAGAAATTCTCTCAATGCA
CCTTTTTGTATGGTCTTTATGGGTGTCAGTACGTTGAGTCTATCCCTACT
GGCCGTCTGCTTGTGCATCAGTATCTCATGCTATTACGCCAACACAAACC
TCGTTAAACTCCCTGATAAATGTAAAACGTTTCTGAGAAAGTCTGGCAAG
TTCCTTGGTGTGAACCTGAAACGAGAGTTTGATGGATGGCGACACATGTT
GAACGAGATTCGAAATTTTGAAGAAGAGAACTTTATCGGAAGTTGCTCGT
CAGGTTCTTTACATGAAGAAGTGAAAAAGTTCGCATTGGCATCACATACC
GAACATCCGACAGAACGTGCGAAGAGTTCACCAGAACAAACACCTGTTCA
AACAAGGAAAGACAATTCGCAACACAAGTGTTCCTTAAGCGAAGAAGAAA
TTGACGGAGTCGATCCTCTTTTTGAGAATCCAGAAGATTTAAGGTCAGTT
CATGAAAGGTTGGAGATTTTGTTGTCGACTTTTGAAGAGCAGGATGATAG
CTCTTGGCGAGAAATGGAGTGGTTTCTCTTCTCACAGGTTGTCGATAAAA
TCTGCTTCGTCGTTTTCACGTCTTATTTTGTGTTGTCCCTGGTCTTCGCT
GGTATACATATTTATGAGGTGTACTGATCTAGAAGAGGACAAAGAGTATA
ATGGACTCCTCAGCACCCTGCTCACCAAGATCAACCTTCGACACGATGGA
GTACAAACATGGCTTGCACCCTCCACCCTTCTTCTTAAATGCGCCATCAT
TGTCAGCCATTTCCCTTTTGACACTCAGCATTGTCATTTACAATTTGGAA
GTTTTGCTTTTGACTCAAGCAAACTAAACATTAACGTCAAACCTCTGGAC
CTTGATCTTTATGAAGAGCTGGGCAAACAAACGATTGAGTTGGAATCCGA
TGGACTTTGGCAATATTACCGATATCAACATTGATCCTGAAGCGGCTTGG
GTTCCCAATCTTTATGTGCATGGCAACAGTATCTGGTCGCCGTCAAACAC
CGGAAGAACGTTTACATTCTCATCTCTTTGGAGATCAACATCACGACTTG
ACGGCCTTCCCTCTGGAGAAAGGATCACTTGATTTGAATTTCCGATTGAA
GCTGTTTGGAGCTGACATTGAAACCGACACGGAGACACTTAGTGTTGACG
TCAACTTTATCCAGATGGAAGGCACTTTTCTTTCAAATATGTTTTGGATG
ATATTATGTTTCATATTGATTTTCAATACAGACAGTCCAGAATGGGAGCT
GCTGGAATCTGGGCACGCCAAAGAATACGTCACTTACCCTGGCTCCAAGA
CGCCGTACACCGACGCCCTGTACGTTCTCAAAATACGACGCAAGGCTCTG
GCACCTTTGAAGGAGCTGGTGTTTCCAAATTTAGCGCTCATCACGTTGAC
TATGCTTGTGTTTGTTATTCCAACGGATGCTGGTGAACGAATCGGATACC
TGTTCACCACGTTTCTTGCCATCGCTTTCTTCATGACCGACACTATCGAT
ACTTTACCAAGAAATTCTCTCAATGCACCTTTTTGTATGGTCTTTATGGG
TGTCAGTACGTTGAGTCTATCCCTACTGGCCGTCTGCTTGTGCATCAGTA
TCTCATGCTATTACGCCAACACAAACCTCGTTAAACTCCCTGATAAATGT
AAAACGTTTCTGAGAAAGTCTGGCAAGTTCCTTGGTGTGAACCTGAAACG
AGAGTTTGATGGATGGCGACACATGTTGAACGAGATTCGAAATTTTGAAG
AAGAGAACTTTATCGGAAGTTGCTCGTCAGGTTCTTTACATGAAGAAGTG
AAAAAGTTCGCATTGGCATCACATACCGAACATCCGACAGAACGTGCGAA
GAGTTCACCAGAACAAACACCTGTTCAAACAAGGAAAGACAATTCGCAAC
ACAAGTGTTCCTTAAGCGAAGAAGAAATTGACGGAGTCGATCCTCTTTTT
GAGAATCCAGAAGATTTAAGGTCAGTTCATGAAAGGTTGGAGATTTTGTT
GTCGACTTTTGAAGAGCAGGATGATAGCTCTTGGCGAGAAATGGAGTGGT
TTCTCTTCTCACAGGTTGTCGATAAAATCTGCTTCGTCGTTTTCACGTCT
TATTTTGTGTTGTCCCTGGTCTTCGCTGGTATACATATTTATGAGGTGTA
CTGATCTAGAAGAGGACAAAGAGTATAATGGACTCCTCAGCACCCTGCTC
ACCAAGATCAACCTTCGACACGATGGAGTACAAACATGGCTTGCACCCTC
CACCCTTCTTCTTAAATGCGCCATCATTGTCAGCCATTTCCCTTTTGACA
CTCAGCATTGTCATTTACAATTTGGAAGTTTTGCTTTTGACTCAAGCAAA
CTAAACATTAACGTCAAACCTCTGGACCTTGATCTTTATGAAGAGCTGGG
CAAACAAACGATTGAGTTGGAATCCGATGGACTTTGGCAATATTACCGAT
ATCAACATTGATCCTGAAGCGGCTTGGGTTCCCAATCTTTATGTGCATGG
CAACAGTATCTGGTCGCCGTCAAACACCGGAAGAACGTTTACATTCTCAT
CTCTTTGGAGATCAACATCACGACTTGACGGCCTTCCCTCTGGAGAAAGG
ATCACTTGATTTGAATTTCCGATTGAAGCTGTTTGGAGCTGACATTGAAA
CCGACACGGAGACACTTAGTGTTGACGTCAACTTTATCCAGATGGAAGGC
ACTTTTCTTTCAAATATGTTTTGGATGATATTATGTTTCATATTGATTTT
CAATACAGACAGTCCAGAATGGGAGCTGCTGGAATCTGGGCACGCCAAAG
AATACGTCACTTACCCTGGCTCCAAGACGCCGTACACCGACGCCCTGTAC
GTTCTCAAAATACGACGCAAGGCTCTGGCACCTTTGAAGGAGCTGGTGTT
TCCAAATTTAGCGCTCATCACGTTGACTATGCTTGTGTTTGTTATTCCAA
CGGATGCTGGTGAACGAATCGGATACCTGTTCACCACGTTTCTTGCCATC
GCTTTCTTCATGACCGACACTATCGATACTTTACCAAGAAATTCTCTCAA
TGCACCTTTTTGTATGGTCTTTATGGGTGTCAGTACGTTGAGTCTATCCC
TACTGGCCGTCTGCTTGTGCATCAGTATCTCATGCTATTACGCCAACACA
AACCTCGTTAAACTCCCTGATAAATGTAAAACGTTTCTGAGAAAGTCTGG
CAAGTTCCTTGGTGTGAACCTGAAACGAGAGTTTGATGGATGGCGACACA
TGTTGAACGAGATTCGAAATTTTGAAGAAGAGAACTTTATCGGAAGTTGC
TCGTCAGGTTCTTTACATGAAGAAGTGAAAAAGTTCGCATTGGCATCACA
TACCGAACATCCGACAGAACGTGCGAAGAGTTCACCAGAACAAACACCTG
TTCAAACAAGGAAAGACAATTCGCAACACAAGTGTTCCTTAAGCGAAGAA
GAAATTGACGGAGTCGATCCTCTTTTTGAGAATCCAGAAGATTTAAGGTC
AGTTCATGAAAGGTTGGAGATTTTGTTGTCGACTTTTGAAGAGCAGGATG
ATAGCTCTTGGCGAGAAATGGAGTGGTTTCTCTTCTCACAGGTTGTCGAT
AAAATCTGCTTCGTCGTTTTCACGTCTTATTTTGTGTTGTCCCTGGTCTT
CGCTGGTATACATATTTATGAGGTGTACTGATCTAGAAGAGGACAAAGAG
TATAATGGACTCCTCAGCACCCTGCTCACCAAGATCAACCTTCGACACGA
TGGAGTACAAACATGGCTTGCACCCTCCACCCTTCTTCTTAAATGCGCCA
TCATTGTCAGCCATTTCCCTTTTGACACTCAGCATTGTCATTTACAATTT
GGAAGTTTTGCTTTTGACTCAAGCAAACTAAACATTAACGTCAAACCTCT
GGACCTTGATCTTTATGAAGAGCTGGGCAAACAAACGATTGAGTTGGAAT
CCGATGGACTTTGGCAATATTACCGATATCAACATTGATCCTGAAGCGGC
TTGGGTTCCCAATCTTTATGTGCATGGCAACAGTATCTGGTCGCCGTCAA
ACACCGGAAGAACGTTTACATTCTCATCTCTTTGGAGATCAACATCACGA
CTTGACGGCCTTCCCTCTGGAGAAAGGATCACTTGATTTGAATTTCCGAT
TGAAGCTGTTTGGAGCTGACATTGAAACCGACACGGAGACACTTAGTGTT
GACGTCAACTTTATCCAGATGGAAGGCACTTTTCTTTCAAATATGTTTTG
GATGATATTATGTTTCATATTGATTTTCAATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010347XLOC_010347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018471-exon-sc0000300-1575043694:133045..133623TCONS_00018471-exon-sc0000300-1575043694:133045..133623Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1575043694:132713..132900TCONS_00018471-exon-sc0000300-1575043694:132713..132900Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1575043694:132458..132567TCONS_00018471-exon-sc0000300-1575043694:132458..132567Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1575043694:131726..131964TCONS_00018471-exon-sc0000300-1575043694:131726..131964Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1575043694:129824..131047TCONS_00018471-exon-sc0000300-1575043694:129824..131047Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1510915933:133045..133623TCONS_00018471-exon-sc0000300-1510915933:133045..133623Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1510915933:132713..132900TCONS_00018471-exon-sc0000300-1510915933:132713..132900Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1510915933:132458..132567TCONS_00018471-exon-sc0000300-1510915933:132458..132567Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1510915933:131726..131964TCONS_00018471-exon-sc0000300-1510915933:131726..131964Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1510915933:129824..131047TCONS_00018471-exon-sc0000300-1510915933:129824..131047Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1491911889:133045..133623TCONS_00018471-exon-sc0000300-1491911889:133045..133623Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1491911889:132713..132900TCONS_00018471-exon-sc0000300-1491911889:132713..132900Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1491911889:132458..132567TCONS_00018471-exon-sc0000300-1491911889:132458..132567Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1491911889:131726..131964TCONS_00018471-exon-sc0000300-1491911889:131726..131964Clytia hemisphaericaexon
TCONS_00018471-exon-sc0000300-1491911889:129824..131047TCONS_00018471-exon-sc0000300-1491911889:129824..131047Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018471-proteinTCONS_00018471-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:129824..133623 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.06026	9.78968	6.24166	5.1944	5.48741	5.58806	0.00213932	8.74206	4.72366	2.16713	1.41522e-08	1.26581	3.29463	1.12512	6.04852	9.9657	5.76228	8.45491	4.81647	4.35986	6.52208	6.38436	2.23656	8.6649	0.820972	0	1.71011e-06	2.54459	2.84771	0.0234791
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006029Neurotrans-gated_channel_TM
IPR006202Neur_chan_lig-bd
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
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BLAST of TCONS_00018471 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.877e-35
Identity = 122/504 (24.21%), Postives = 228/504 (45.24%), Query Frame = 3 
Query:  525 FLSNMFWMILCFILIFNTAVSGRRQTPEERLHSHLFGDQHHDLTAFPLEKGS--LDLNFRLKLFG-ADIETDTETLSVDVNFIQSWANKRLSWNPMDFGNITDINIDPEAAWVPNLYVHGNLEEDKEYNGLLSTLLTKINLRHDGVQTWLAPSTLLLKCAIIVSHFPFDTQHCHLQFGSFAFDSSKLNINV--KPLDLDLYEDSPEWELLESGHAKEYVTYPGSKTPYTDALYVLKIRRKALAPLKELVFPNLALITLTMLVFVIPTDAGERIGYLFTTFLAIAFFMTDTIDTLPRNSLNAPFCMVFMGVSTLSLSLLAVCLCISISCYYANTNLVKLPDKCKT-FLRKSGKFLGVNLKREFDGWRHMLXXXXXXXXXXXXGSCSSGSLHEEVKKFALASHTEHPTERAKSSPE--QTPVQTRKDNSQHKCSLSEEEIDGVDPLFENPEDLRSVHERLEILLSTFEEQDDSSWREMEWFLFSQVVDKICFVVFTSYFVLSLVFA 2012
            FL     + LC    F     G     EERL   LF   H++    P+E  S  + ++F + +   A+++   + +  ++     W + +L W+PM++  I  + +  +  W P++ ++ N   D +  G      TK  L+++G+ TW  P+     C + ++ FPFD Q+C L+FGS+ +D +++++ +    +D++ + ++ EWE++++   K  + Y   +  YTD  Y   IRR  +     L+ P L +  LT+LVF +P+D GE++    +  L++  F+    +T+P  SL  P    ++  + + ++L  V     ++ +Y       +P   KT FL+   + L   ++   D  R   ++                S H E +      H     E A S       P+Q   +NS+H   + E+ I+ V  + EN   ++S +E  E+       +DD       W   + VVD+    VF   F++  VF 
Sbjct:    9 FLHGGLCLWLCVFTPFFKGCVG--CATEERLFHKLFS--HYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNAVGDFQVEGK-----TKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTVFLKLLPQVLL--MRWPLDKTRGTGSDAVPRGLARRPAKGKLAS-HGEPRHLKECFHCHKSNELATSKRRLSHQPLQWVVENSEHSPEV-EDVINSVQFIAEN---MKSHNETKEV-------EDD-------WKYVAMVVDR----VFLWVFIIVCVFG 478
The following BLAST results are available for this feature:
BLAST of TCONS_00018471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA61.877e-3524.21Neuronal acetylcholine receptor subunit alpha-6 OS... [more]
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