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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018370 ID=TCONS_00018370|Name=TCONS_00018370|organism=Clytia hemisphaerica|type=transcript|length=974bp
CACTTAGACTTATTCATCAATATTTTCAACTTCTCAACGTTTTGAGCTTc
gcaaaattgtttttatatgaagTCAAGATGATGAGATAGCTTATGGAAAC
CTCAAAATGATCAATAGGCATTCGAAAAACCGTGTGACATTCTGTTTATT
CATTATACTGATTGTCTTGGCCAAATTATGCAACACAGAAAACTTATCTC
CGCAACAAAACAAACATCCGCGACGTCATGTCCGAATTGTGATACGGAAC
TCGCCAATCACTCGCTCAACGGATAACATACTTATGCGGTACGCCCGTGA
AAGGGACCGGACGTTGGTCAGGGTGATTCGCACGAAGCGCCGCAAGCGAA
ACAAGGACGTTTTACACATCGCTCCCACACACATGAGAACTGTCCGGCTA
AAAAGCAAAACAGGATTCTTTTTGGAGATACAACCGTCCGGAAAAGTCAC
CGGACATGTAAATAAAACCAAATATACCAAGATGGAGCTACAAGTGATCA
CACCGCACGTCAAACGTATCAAAAGTGTGGCTACTGGTCGCTATTTGGCC
ATCAATAGAAAAGGAAAAGTCATTTCAAAGGATCATCCGACTATGGATTC
ATTACTTTTCGAAGAGTTGTTGGAAAATTATTACATGACTTATTCCTCCT
TGACTTATCCAAAGTCACAAAACAGACCGCATTGGTACTTGGGTATCTAT
TTGTATCGAAAGCATAAGTGCAAAGTACGTCGAGCCTCACGCACCATCGT
TGGGGATGCAGCTACTCATTTTCACATGATACCTGTGTTTGATTTCTATT
GAgttttttcttatgttttttttttacatttgaaGAAATCTAAAGATGGc
agCATGTGCTTTGACAATTACACTTTTTCAAGTCTTCgttttatgtaaaa
atatttagagcaatttaaaattttaactttattttcattcagaaAATATA
CGTTTGAGGAAAACTTCCCCAAAA Run BLAST on NCBI transcript from alignment at sc0000297:142602..147269+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018370 ID=TCONS_00018370|Name=TCONS_00018370|organism=Clytia hemisphaerica|type=transcript|length=4668bp|location=Sequence derived from alignment at sc0000297:142602..147269+ (Clytia hemisphaerica)
CACTTAGACTTATTCATCAATATTTTCAACTTCTCAACGTTTTGAGCTTc
gcaaaattgtttttatatgaagTCAAGATGATGAGATAGCTTATGGAAAC
CTCAAAATGATCAATAGGGTAAGGAAGACTTTACACCTCTCCTTTTCGAT
GATCGAAATTTTGTGTTTGGGTGTATTTCTACtcgataaaagtttaaaaa
gttggcattatttttgaaaatatatgtCCTTTGgtcttgttttaaaattt
tcgttCCTGTTAATAATTTTTGGTGAGAACACTATCTAGCGAATAAGAGG
TTATCTGCATTTGTAAATCTATAAAGGGCTGCTTATTCAGCCNCTGTTAA
TAATTTTTGGTGAGAACACTACCTAGCGAATAAGAGGTTATCTGCATTTG
TAAATCTATAAGGGGCTGCTTATTCAGCCATTGGTAAGAtttgattatat
tttattgATTCTTGAGTCTTGAAGTAAGAAATTGAAAACAGTTTTGGAGG
ATATCAATCATGATGGATTCTTGTATTTGATTCCTGACAAACGATCTGAA
GTGTTTTAAAAGCTAGACTTTTTATCATCAGAGCGGAATAAAGGTCGAAT
TTCGAAACTAATACtgcagtggagtctctttaactcgaacctccataact
cgaacaagttttatcatgttcccttcagttaacaatgccttataaacctt
actctataattcggaatttccttaactcaaacaagttgTGCGTGCTCGAA
TTATGGAGACTTCACTTTACAAACGGTCGACCCTTATACTATACATGGTT
AATCCATGAAAGAAAAGACAAGAAATCAAATACTTCTGATCATTCACTAC
TTTAGGCGCTTATGGTTTTCTCTCCCCTCGATATCAGATGAAACAGCTCC
ATCCACTTGAGAATAATCTTAAAAATCTACTTTGTTGATCAACGTGTCtg
tcaaaaaaagtttcttctcAAGCAAAAAGAGCTTTTAGAAAGATCTCATG
TAGACAGTTATAAAGTTGATGTGATACATGGAAATTGCCTTGCGTCGTTT
TCGTTTCGATTGCCAATGGAGTGCATGTGTTTGAGTTGCCTTGTTCAGAA
AATGAAATCGTGGTTTGACGCCGTAAAGGTATGGCCAGGATGTTGTTGTG
TTAGTGCTCTAAAGAAATAAAACGAATACGGTCAATTTTCAAAGCTGCAA
AATTCTGCTGAAACAACTTCATAAaatgaacgaatgaatgaatgaatgaa
taaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatg
aatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaa
tgcaTAAATGATTTACTACGTAAGGCCACAATAAATACTGCACTTCCGTG
TTTATCAACAGGAAAtgtcaaattcatttttttgataaacgaggtgttaa
aagttatctttttaCCTCCAAGAATAGCATGATCGTTCAATTTGATAAAT
TACATGTCAGGGTATGTGCCTGTGAGAGGTTCTATAAATCAAGTGAATGT
TGACGTTGTGTATTTGTTGACATGTATAGATGGAACGATAATACCAAATA
TACCAGTATTTTATGCTTAGTACTCTATCCACATTTGATACAGATAAAGC
CCTTACTACATTGCATCACAATCTCTATACTATCACTAAACAAcgatttc
tattgtttttattttacagCATTCGAAAAACCGTGTGACATTCTGTTTAT
TCATTATACTGATTGTCTTGGCCAAATTATGCAACACAGAAAACTTATCT
CCGCAACAAAACAAACATCCGCGACGTCATGTCCGAATTGTGATACGGAA
CTCGCCAATCACTCGCTCAACGGATAACATACTTATGCGGTACGCCCGTG
AAAGGGACCGGACGTTGGTCAGGGTGATTCGCACGAAGCGCCGCAAGCGA
AACAAGGACGTTTTACACATCGCTCCCACACACATGAGAACTGTCCGGCT
AAAAAGCAAAACAGGATTCTTTTTGGAGATACAACCGTCCGGAAAAGTCA
CCGGACATGTAAATAAAACCAAATATAGTAAGTGAATctttgaacttttt
attttacttactATCTCTGGAAAGGCAACAAAATATGCTGAAATCTTAAC
TTTACGGCTGACTTTATAAGTTTTAACTTTAATAAATTCCAGCACTCCGT
AAATTCTAATTTTCcattaatttttttagtttaaaaacaAATTGGTAATC
TTAGTTTTTTTATGCTACGGTATGGTTCGCGGTCAGCCGAAAAGACCTAG
TGATCCCAAATGATGCCAGTGGCACTTAATGGGTTAAACGACAAATGGAA
CGAATTCGAAACCCAAGAAAATCCTCTTTAAATCTGGGATTTTACTCCCT
CGCTTTAAttgttaaattaaattaaattaaatgtaCCATCGGGTCAGGTG
TAATTGACTGTAAAAAAGAGAATCCTCGGATGGGACAATGCGGGCCGGAT
GTCCACTTGAAACAGACCTGTAGGATTAAAAAAGTCACTTCCTTGTTTAC
AGCCAAGATGGAGCTACAAGTGATCACACCGCACGTCAANAAAAAAGTTA
CTTCCTTGTTTACAGCCAAGATGGAGCTACAAGTGATCACACCGCACGTC
AAACGTATCAAAAGTGTGGCTACTGGTCGCTATTTGGCCATCAATAGAAA
AGGAAAAGTCATTTCAAAGGTAAGAAGGTTTCAATTTTATGTAATCCAAC
ATTCCACTATTTTATAGAGTCGTGAAATTTTATAgtcaactttctttttt
ttgtaattcgaacttatattggtcccctcagctggaaattgttttaaatt
actctctgtattTTGAAtctttccttaactcgaataaaATCTGGTCCCCT
tgaacatcgaattagagagagtgtaTAACGTTATGATGGCCCATCTATGA
CTTTAACAATTCCGAGATTAATTCAACATTTTTGCACACCCCTGCATCTT
CCAAGGCTAATTGACTGATACTCATATTTTCCATACTAAACCACTAACCC
CGCCACTAACTATTGTTGTTGTTCCTTTTAAATTCGCCTCAGAAATCTAT
CTATAGTATACGAAACAATTTGTTctaaaagaactttttttcgtttcttt
CGCTTTAGGGTGTGTCGGATAACGAGACCTACTTCTTTGAAGAACTTTCT
GAAAATTACGATTATCTCTATTGTTCCATAAAATATCCGAAAACAGATTC
TGGATTATCCTGGTATGTAGGCTTGAAACGAAGCCGCTCAAGAAAGACTT
TACAAGGGCGCGCCAAAAGAGCTTCCAGAACTCTACCCGGTGATTCAGCc
actcatttttcaattttctttgagCATTAGTGTAATTTAGATAATTTACT
CCCAAATTTTTTTGGGgataaaaaaagataatttgtttttgttgtgtTAT
TTTTGGAGGCAACTTTTAAGCGAGTACAATGCAAAATTTTGTGACTTTAC
TGAGGCGGATTTGAAGGGAAAACAAACTAATCTTCTCGTCATTTTTTTTA
TGTAATACTCCATAAATAATATACCTATTGAGTTGAATTGACATGAACTT
AACTTGccttatattttcaatttaataAATTTAATAGCATTGCTCACTTA
AATTCGCATCCCAATACTTTTTGTgagttttcagccaaaattatgaaatt
agacgttatatttttgttatttttgtgttattactatttattttttatga
gaaGACATTTTTTATAGATATCTAAAATCTTTGCCGGGGCGAAAAAGCGC
GTATTTTTATGACAACTTTTATACAATTaatatatttgacatttttgtgt
tatttttgtttaatgcagtattttgaaaaacaaacagttaacaaaaaaat
catatcCATGATTTGATGTCTCTTTTAGAACAGGAATGTTGAAGGTCCGA
TAAATTAAGAAGTTGAGGGGAAAGTCTTTTAAAAAGGATGTTGTGCTAGA
TAATTTggccaaaatcgcaaaaaatattactgCTAGTGGAAATTATATGA
GAAAATTGCACTGAAAAACCAACCCCACCGCTTTTTGAACTAAATACAAT
AGTACAATAGATTCAGCTTCCCGTTGGGATTTCGATGAAAAATTTTCACC
GGAACACTCAAAACCTCATTCCAGCTTTTTATCAATTTGTGACTCGGGTG
TTATTTTCAATTGTTCAAATAAAGTTTatttattagaattttttttttac
tcttcCCTGACTTTTCTGTTTCAGGATCATCCGACTATGGATTCATTACT
TTTCGAAGAGTTGTTGGAAAATTATTACATGACTTATTCCTCCTTGACTT
ATCCAAAGTCACAAAACAGACCGCATTGGTACTTGGGTATCTATTTGTAT
CGAAAGCATAAGTGCAAAGTACGTCGAGCCTCACGCACCATCGTTGGGGA
TGCAGCTACTCATTTTCACATGATACCTGTGTTTGATTTCTATTGAgttt
tttcttatgttttttttttacatttgaaGAAATCTAAAGATGGcagCATG
TGCTTTGACAATTACACTTTTTCAAGTCTTCgttttatgtaaaaatattt
agagcaatttaaaattttaactttattttcattcagaaAATATACGTTTG
AGGAAAACTTCCCCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018370-exon-sc0000297-1491911889:142602..142719 | TCONS_00018370-exon-sc0000297-1491911889:142602..142719 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1510915933:142602..142719 | TCONS_00018370-exon-sc0000297-1510915933:142602..142719 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1575043694:142602..142719 | TCONS_00018370-exon-sc0000297-1575043694:142602..142719 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1491911889:144321..144678 | TCONS_00018370-exon-sc0000297-1491911889:144321..144678 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1510915933:144321..144678 | TCONS_00018370-exon-sc0000297-1510915933:144321..144678 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1575043694:144321..144678 | TCONS_00018370-exon-sc0000297-1575043694:144321..144678 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1491911889:145217..145320 | TCONS_00018370-exon-sc0000297-1491911889:145217..145320 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1510915933:145217..145320 | TCONS_00018370-exon-sc0000297-1510915933:145217..145320 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1575043694:145217..145320 | TCONS_00018370-exon-sc0000297-1575043694:145217..145320 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1491911889:146876..147269 | TCONS_00018370-exon-sc0000297-1491911889:146876..147269 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1510915933:146876..147269 | TCONS_00018370-exon-sc0000297-1510915933:146876..147269 | Clytia hemisphaerica | exon |
| TCONS_00018370-exon-sc0000297-1575043694:146876..147269 | TCONS_00018370-exon-sc0000297-1575043694:146876..147269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:142602..147269 + |
Blast
The following BLAST results are available for this feature:
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