TCONS_00018316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018316
Unique NameTCONS_00018316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018316 ID=TCONS_00018316|Name=TCONS_00018316|organism=Clytia hemisphaerica|type=transcript|length=532bp
NNACCCACTTCGTTATTGAAAGATGCTGATTTGGATATACTTGAAAATCG
TCGCAAAATCAATCGCCTCAAACTTTTTCACAACATCATGTCTGGTTCAA
AACGTGTAGACAAATCAATCCTCCCCACGAGACAGCgttgtaaaaatgta
aaatataaaCAATTAATGGGCTCAATCCAGTCATACACAATGTCTTTTTT
CCCAAATGTGGTTCAACTATGGAACAGCCTTCCAAAAGAAGCAACATCTA
TTGAAGATactgttgtttttattgataaaattaGTGGTCTGAACTTAGAT
TTCTAGTAAACTATTGACTCCATTTTATGCTAATTTTATCCCTTATCTTC
AGTCCTAAATCTGTGGatctaattttgaattatttttgtcaacaCCTATC
CAAAATCCAGAACTCAAAGCTTGTAATCATTTGGAATCTCTCTACTCACT
AAGCTTTATATACCTTTTaagatgtttttatatttatttttagtaaataa
atcttgtttttatatgcaatttttaATTTTAA
Run BLAST on NCBI

protein sequence of TCONS_00018316-protein

>TCONS_00018316-protein ID=TCONS_00018316-protein|Name=TCONS_00018316-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
XPTSLLKDADLDILENRRKINRLKLFHNIMSGSKRVDKSILPTRQRCKNV
KYKQLMGSIQSYTMSFFPNVVQLWNSLPKEATSIEDTVVFIDKISGLNLD
F
Run BLAST on NCBI

transcript from alignment at sc0000295:153280..153811

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018316 ID=TCONS_00018316|Name=TCONS_00018316|organism=Clytia hemisphaerica|type=transcript|length=532bp|location=Sequence derived from alignment at sc0000295:153280..153811 (Clytia hemisphaerica)
TTAAAATtaaaaattgcatataaaaacaagatttatttactaaaaataaa
tataaaaacatcttAAAAGGTATATAAAGCTTAGTGAGTAGAGAGATTCC
AAATGATTACAAGCTTTGAGTTCTGGATTTTGGATAGGtgttgacaaaaa
taattcaaaattagatCCACAGATTTAGGACTGAAGATAAGGGATAAAAT
TAGCATAAAATGGAGTCAATAGTTTACTAGAAATCTAAGTTCAGACCACt
aattttatcaataaaaacaacagtATCTTCAATAGATGTTGCTTCTTTTG
GAAGGCTGTTCCATAGTTGAACCACATTTGGGAAAAAAGACATTGTGTAT
GACTGGATTGAGCCCATTAATTGtttatattttacatttttacaacGCTG
TCTCGTGGGGAGGATTGATTTGTCTACACGTTTTGAACCAGACATGATGT
TGTGAAAAAGTTTGAGGCGATTGATTTTGCGACGATTTTCAAGTATATCC
AAATCAGCATCTTTCAATAACGAAGTGGGTNN

Coding sequence (CDS) from alignment at sc0000295:153280..153811

>TCONS_00018316 ID=TCONS_00018316|Name=TCONS_00018316|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0000295:153280..153811 (Clytia hemisphaerica)
CTAGAAATCTAAGTTCAGACCACtaattttatcaataaaaacaacagtAT
CTTCAATAGATGTTGCTTCTTTTGGAAGGCTGTTCCATAGTTGAACCACA
TTTGGGAAAAAAGACATTGTGTATGACTGGATTGAGCCCATTAATTGttt
atattttacatttttacaacGCTGTCTCGTGGGGAGGATTGATTTGTCTA
CACGTTTTGAACCAGACATGATGTTGTGAAAAAGTTTGAGGCGATTGATT
TTGCGACGATTTTCAAGTATATCCAAATCAGCATCTTTCAATAACGAAGT
GGGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010282XLOC_010282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018316-exon-sc0000295-1491911889:153280..153811TCONS_00018316-exon-sc0000295-1491911889:153280..153811Clytia hemisphaericaexon
TCONS_00018316-exon-sc0000295-1510915933:153280..153811TCONS_00018316-exon-sc0000295-1510915933:153280..153811Clytia hemisphaericaexon
TCONS_00018316-exon-sc0000295-1575043694:153280..153811TCONS_00018316-exon-sc0000295-1575043694:153280..153811Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018316-proteinTCONS_00018316-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:153280..153811 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98428	1.73976	2.22986	1.88564	6.66553	3.27737	2.82429	3.17288	1.84779	1.43615	1.55793	1.56687	0.950034	1.06208	0.748437	0.927175	1.06836	0.948479	1.1676	0.522818	1.56495	1.94219	0.630362	1.60479	1.88685	1.62476	1.79239	1.28588	0.609559	0.849281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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