TCONS_00018293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018293
Unique NameTCONS_00018293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length989

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018293 ID=TCONS_00018293|Name=TCONS_00018293|organism=Clytia hemisphaerica|type=transcript|length=989bp
TTAATGTGCAATTGATTCCATAATAGTCAGTAAAACATTCCTTTTCTCCC
GTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGT
TGTACAGTTCATTCCGTAGTAATCAACAAAACATTCCTTTTCACCAGTGA
TTTTGTTGCAGATGAAATTGCTTCCATCTTTGACTTTGCAGTATGCTGTA
CAGTTCACTCCGTAATAATCAACAAAACATTCCTTTTCACCAGTAATCAA
GTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGTTGTACAGT
TCACTCCGTAATAATCAACAAAACATTCCTTTTCTCCAGTGATTTTGTTG
CAGATGAAATTGCTCCCATCTTCAACATTGCAGTATGTTGTACAATTCAT
TCCGTAATAATCAGCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGA
TGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCG
TAATAATCGGCAAAACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGAA
ATTGTTCCCATCTTTAACTTTGCAGTATCTTGTACAGTTCACTCCGTAAT
AATCGGCAAAACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTG
CTCCCATCTTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATC
AGCAAAACACTCCTTTTCTCCAGTGATTCTGTTGCAGATGAAATTGCTTC
CATCTTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCA
AAACACTCCTTTTCTCCAGTAATTTTGTTGCAGATGAAATTGCTTCCATC
TTCAACTTTGCAATATGTTGTACAGTTCACTCCAAAGTAGTTCTCATAAC
ATTGCTTTTGGCCGGTGGTTTCATTGCAAAAGTAATGACCGTTTGGAATT
TCTTTACATTCTGTGTCTTCAATTTGAAGTCCGTCCTAT
Run BLAST on NCBI

transcript from alignment at sc0000295:244649..247161-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018293 ID=TCONS_00018293|Name=TCONS_00018293|organism=Clytia hemisphaerica|type=transcript|length=2513bp|location=Sequence derived from alignment at sc0000295:244649..247161- (Clytia hemisphaerica)
TTAATGTGCAATTGATTCCATAATAGTCAGTAAAACATTCCTTTTCTCCC
GTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGT
TGTACAGTTCATTCCGTAGTAATCAACAAAACATTCCTTTTCACCAGTGA
TTTTGTTGCAGATGAAATTGCTTCCATCTTTGACTTTGCAGTATGCTGTA
CAGTTCACTCCGTAATAATCAACAAAACATTCCTTTTCACCAGTAATCAA
GTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGTTGTACAGT
TCACTCCGTAATAATCAACAAAACATTCCTTTTCACCGGTAATCTTGTTA
CAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGTTGTACAGTTCAC
TCCGTAATAATCGACAAAACATTCCTTTTCACCAGTAATCTTGTTGCAGA
TGAAATTGCTCCCATCTTTGACTTTGCAGTATGTTGTACAATTAATTCCG
TAGTAATCAACAAAACATTCCTTTTCTCCAGTAATCTTGTTGCAGATGAA
ATTGCTTCCTTCTTCGACTTTGCAGTATGTTGTACAGTTCACTCCGTAAT
AATCGGCAAAACATTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTG
CTTCCATCTTCAACTTTGCAGTTTGTTGTACAATTCATTCCGTAATAATC
AGCAAAACACTCCTTTGCTCCAGTGATTTTGTTGCAGATGAAATTGCTTC
CATCTTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCA
AAACACTCCTTTTCTCCGGTGATTTTGTTGCAGATGAAATTGCTCCCCTC
TTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAACA
TCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTCAAC
TTTGCAGTTTGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCCT
TTTCTCCAGTGATTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTG
CAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCCTTTTC
TCCAGTGATTTTGTTGCAGATGAAATTGTTCCCATCTTTAACTTTGCAGT
ATGTTGTACAGTTCACTCCGTAATAATCGGCAAAACATTCCTTCTCTCCC
GTGATTTTGTTGCAGATGAAATTGCTCCCATCGTCAACTTTGCAGTATGT
TGTACAATTCATTCCGTAATAATCGGCAAAACACTCCTTTTCTCCAGTGA
TTCTGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGTTGTA
CAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGT
TGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTC
ACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGA
TGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCG
TAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAAT
TGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAA
TCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGCTTC
CATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCA
AACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTT
CAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAAACAT
TCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAAC
ATTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCCT
TTTCTCCAGTGATTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTG
CAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAAACATTCCTTCTC
TCCCGTGATTTTGTTGCAGATGAAATTGTTCCCATCTTTAACTTTGCAGT
ATCTTGTACAGTTCACTCCGTAATAATCGGCAAAACATTCCTTCTCTCCC
GTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGT
TGTACAATTCATTCCGTAATAATCAGCAAAACACTCCTTTTCTCCAGTGA
TTCTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTA
CAATTCATTCCGTAATAATCAGCAAAACACTCCTTTTCTCCAGTAATTTT
GTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAATATGTTGTACAGT
TCACTCCAAAGTAGTTCTCATAACATTGCTTTTGGCCGGTGGTTTCATTG
CAAAAGTAATGACCGTTTGGAATTTCTTTACATTCTGTGTCTTCAATTTG
AAGTCCGTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010271XLOC_010271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018293-exon-sc0000295-1575043694:246838..247161TCONS_00018293-exon-sc0000295-1575043694:246838..247161Clytia hemisphaericaexon
TCONS_00018293-exon-sc0000295-1575043694:244649..245313TCONS_00018293-exon-sc0000295-1575043694:244649..245313Clytia hemisphaericaexon
TCONS_00018293-exon-sc0000295-1510915933:246838..247161TCONS_00018293-exon-sc0000295-1510915933:246838..247161Clytia hemisphaericaexon
TCONS_00018293-exon-sc0000295-1510915933:244649..245313TCONS_00018293-exon-sc0000295-1510915933:244649..245313Clytia hemisphaericaexon
TCONS_00018293-exon-sc0000295-1491911889:246838..247161TCONS_00018293-exon-sc0000295-1491911889:246838..247161Clytia hemisphaericaexon
TCONS_00018293-exon-sc0000295-1491911889:244649..245313TCONS_00018293-exon-sc0000295-1491911889:244649..245313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:244649..247161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0514996	0.0849175	0.00891588	0.30931	1.21162	1.2176	1.72932	1.25855	4.80752	2.29051	6.90339	4.35365	9.17135	6.70567	5.64203	9.50447	2.31166	3.14273	9.42913	6.06196	4.66114	5.59635	5.16101	3.18801	0.879258	1.38547	10.4286	10.336
Blast
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BLAST of TCONS_00018293 vs. Swiss-Prot (Human)
Match: MEG10 (Multiple epidermal growth factor-like domains protein 10 OS=Homo sapiens GN=MEGF10 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.211e-17
Identity = 82/379 (21.64%), Postives = 154/379 (40.63%), Query Frame = -2 
Query:    2 CYENYFGVNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNRITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGVNCTRYCKVKDGNNFICNKITGEKECFADY-------------YGVNCTTYCKVEDGSNFICNKITG--------------EKECFADYYGMNCTTYCNVEDGSNFICNKITGE-------------KECFVDYYGVNCTTYCKVEDGSNFICNLITGEKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINCTL 901
            C  +++G +CT+ C+ ++G+  +CN ITG   C A +             YG +C   C+ ++G+   C+ +TGE  C   Y             +G  C   C  ++G   +C+ +TGE  C + +             +G NC++ C+  +G    C+  TG+  C   Y             YGV C   C+  +G    C  ++G               + C    YG+ C   C     +   C+ ++GE             + C   +YG  C   C  ++G++  C+ +TG+  C   + G++C+  C +                     YG+NC++ C  ++  + +C+ + G   C   ++G++C++
Sbjct:  139 CDGDHWGPHCTSRCQCKNGA--LCNPITGACHCAAGFRGWRCEDRCEQGTYGNDCHQRCQCQNGA--TCDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGG--VCHHVTGECSCPSGWMGTVCGQPCPEGRFGKNCSQECQCHNGG--TCDAATGQCHCSPGYTGERCQDECPVGTYGVLCAETCQCVNGGK--CYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPLGT-------------------YGINCSSRCGCKN--DAVCSPVDGSCTCKAGWHGVDCSI 484

HSP 2 Score: 82.4185 bits (202), Expect = 3.286e-17
Identity = 80/356 (22.47%), Postives = 131/356 (36.80%), Query Frame = -2 
Query:    8 FCNETTGQKQCYENYFGVNCTTYCKVEDGSNFICNKITGE-------------KECFADYYGMNCTTYCKVEDGSNFICNRITGEKECFADYYGMNCTTYCKVEDGSNFICNKITGEKECFADYYGVNCTRYCKVKDGNNFICNKITGEKECFADYYGVNCTTYCKVED---GSNFICNKITG---------------------EKECFADYYGMNCTTYCNVEDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNLITGEKECFVDYYGVNCTAYCKVKDGS-----NFICNKITG------EKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINC 931
            F  E    + C E  +G+ C   C     +   C+ ++GE             + C   +YG  C   C  ++G++  C+ +TG+  C   + G++C+T C +                     YG+NC+  C  K  N+ +C+ + G   C A ++GV+C+  C       G N  C  + G                     E  C    YG+NC   C+        C+  TG   C   + GV+C + C                       +G NC+  C  K+G+     + IC    G      ++ C   +YG  C+  C     S+  C+ ITG  +C   + G  C
Sbjct:  345 FAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPL-------------------GTYGINCSSRCGCK--NDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHCDSVCA-------------------EGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRICSPGFYGHRCSQTCPQCVHSSGPCHHITGLCDCLPGFTGALC 656
The following BLAST results are available for this feature:
BLAST of TCONS_00018293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEG101.211e-1721.64Multiple epidermal growth factor-like domains prot... [more]
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