TCONS_00018275 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018275
Unique NameTCONS_00018275
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018275 ID=TCONS_00018275|Name=TCONS_00018275|organism=Clytia hemisphaerica|type=transcript|length=3212bp
gtcaaatcaaataaaaacccAAAATTTGTACAAAACAAAACGTACTTTAC
ACATGTGACTATGTTGCCAGACACATCAAGCAACAACCACAACAATAAAT
ACTCACGAACAAAACATCAACATCACGTGACacacaacaacaataacaat
acAGTGGTCTCTATGACAACAGAACAAAGCAAAGAAAGATCAATGACTTC
TTCTTGTTTGAATGAAGATTTATATTTCTCGGCAACTGAAGATGACGAAG
AAATGCTTTgctcaaaatgcagGAAAATATGTCGTCACTGTCGGTGCAGT
AGAGAAGATCACTGCTTACTACCGCCTACCATACAAGAGAAAACGTACAG
TATAAGTAAATTTGCTGACCAACATCCAAGCAGTATGGGTAATGATGGAG
ATAGTGGATGCTCGACTGAAGAATATGCATGGGTGCCACCTGGCGTCTCT
GGAGAACTGGTCAATGCTTACATGAACAGTTTACATGAAGACAAAATCCC
GTTTGTGAATAGTATTGGTGAAAACTATCGAGCCAAACAATTATTATACC
AACTACCTCCTCATGATAGCGATTCAAAACATTGTCATAATTTatctgaa
gaagaaaaacgTGAACTTCGCAGTTTTCACGGTCGACGACGTAAAGATTG
TTTGGGTAGAGGAAACGTCCGCTTATTTCCGAACGTTGCGGAAGGAAGTT
CGGGTGTCTGCCAACAGTGTTCCAAACGTATCGTGCCTGGCGAAGTAGTT
GTTCACGCCTGGCGAGCAGGAAAAGAAGCATGCTGGCATCCGGCTTGTTT
TCAATGTACCACGTGTCAAGAATTGTTGGTTGATCTGGTGTATTTCTACC
AAGAGGGACGCGTCTATTGCGGACGTCATCATGCTGAATTGTTGAAACCA
AGATGTTCAGCTTGTGACGAGATCATTTTCTCGGATGAGTGTACAGAAGC
AGAGGGTCGTTTCTGGCATTTGGGACATTTCGCATGTTACGAGTGTGACA
GTTCACTCGGTGGACAACGTTACGTCATGCGTGATAACCATCCAATTTGT
TGCGTctgttttgagaaaatgttcGCTGAGTTTTGCGATTCGTGTGGAGA
GCCGATCGGTATCGATGTCGGTCAAATGGCACACGGCAGTCAACATTGGC
ACGCGAATGAGAAATGCTTCAGCTGTTTCAATTGCGGACAAACGTTACTC
GGCCAACCATTTCTACCGAAAAACGGAGAAATCTTTTGCTCTTCCGGTTG
TAGTCGGGGCATCCCACCACCGAATCCGGTTAACCCGAAATATCCTCCTC
GATCAGCGTCAAGAAACCGATCTTACAGACCGTCGTCAGAAAGTTCAAAC
AATAATTCACGCGACGGGTATGTCAGTTCCAGTACAATGTCACCTGAACC
GGTTCGCAAAATCGTCGAAATCAGATCGAAGGCTAGTTATCGAAGTTCTT
TGGATAAATACGGTCTAGCAGCAGCAGAGAAAATCGGTGATATAGTACGT
AATATGCCGAACGGTGGCGTAATAAAGgaagaaagtgacgaaaaaGACGA
GACGAGTTCCACTTGTTCTTCCGTCGCTTCCTCAAGAGCGAAGGAACTTC
CATCCTTTCCTCCCAGTAATCGTCACAGTAAGAAACCTATACTTCGTGTT
CCCCCGAAACAAAGACCTAAACCTACGGGACCGGAGATTTGGATCGATAT
GGTACCCCCTAAAGAAGCGACCACGCATCGTAAACAAGAAGAGGACTGGG
AGAAACAATCTGTACGGAGCATGCGCAGTAACCGAAGCACGACGTCGACT
AAAAAATATGGCGACGCTATGAGTCATTTGAACGGTAATGATACTATAGA
AAGACTTGTCCAAGGTGAACGACAAATTAATCGTCGGCACCGACGTCGGA
AAGTTGACGATTCATATTTCTCGGACTACGAAGTTGAGAGACGAAAACGC
ACGCAAAGACGTAAACAAACTCCTCTCGTTTATCAAATGGACGACGAAAA
ACCTAACATCCCTCTTATGACTGTTAAATCGCGTTCAACAGAATCGTTAG
ACGCGGGAAAAGCGCGTGTAGCGGGTCGCCGTGACGAACGGGACGGTAAA
AAGAAACGCACTAAATCGGAAACGAATTTAACGAACTCTAAAAATTACAA
ATCGAAAAATGACGCAGTTGCAAACTTAAGACTGAACATTGATGTCAATT
CGCCGaagaaacaatcttacaataaaATGGAGTTGAGTAAGAAAGCAACC
AATAAAAAAACAGAATCTAACGACTCCCGTAAACCAGCCCGTTCTTTCGG
TATGTTTTCGGCTGAAGATCAACAAATGACTCGAATTAATTACGTCACAC
AAGACGATATGGCTATGGACCATCGAAGAAATAGTAAAAgtcccaaaaaa
tcaaaaaggaaaAGTAAAAACCAAGGGCAATGTGTTATCTCATAACCATT
TCATagttaatattttattttttattccaCTGATCTAGCTCTCTCcttac
atttgaaaattatgcatttttaactttttttggttttatatttttagttt
tactAAAATCTATTTTACATCATTCCTCTAGTGTATTATGGCAATGATTT
GGAGAACTGAGTTTTTCACTCAGTTTAATGTTAAATCTGCACACATAATA
TGtaataataattttgaaattggttCGTCTTAGATCCCAAGGTAATTAAA
AGATTCAGAAATGTTGAATCCAAAAAGTGGTTCAAGTCTCAAGGCTCTGG
GTACGATATTAGATCATAAATCAAATGATCGTGAAATGTATTTTTTCATT
GTGAAATATATTAGAATATGTTAGGTTTAGTGCTCCGTGTGCAGGCTGTG
AAAAATTCACCGCCGGGTGTCAATTAAATTATGTATTTTCTTAAGTGTTG
TTATATAtacaaaaggaaaataaaaaatgtaaataatgaAATAACAAAAT
GTTAATAAAACAAAGTAAAATCTATGTTTGCTAATCTGAGTAAGAATTTC
TTACAAGGACGGTCTACCCAGGGAGCTGGAACAGTCTTTTCGGTCTGTAA
TAGCGAACAACTCTGTCGACCCTGGGTTTTTCTTTTAAGGGAAATTTGAG
TGAATTCAAAAACTTCTctattagtagggggaaatttgtaaaatcgctcg
acttttttagtcaaagcacttgttatacatttttggtaagctaaggggta
ggggaatcaaaa
Run BLAST on NCBI

transcript from alignment at sc0000295:75106..83187-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018275 ID=TCONS_00018275|Name=TCONS_00018275|organism=Clytia hemisphaerica|type=transcript|length=8082bp|location=Sequence derived from alignment at sc0000295:75106..83187- (Clytia hemisphaerica)
GTCAAATCAAATAAAAACCCAAAATTTGTACAAAACAAAACGTACTTTAC
ACATGTGACTATGTTGCCAGACACATCAAGCAACAACCACAACAATAAAT
ACTCACGAACAAAACATCAACATCACGTGACACACAACAACAATAACAAT
ACAGTGGTCTCTATGACAACAGAACAAAGCAAAGAAAGATCAATGACTTC
TTCTTGTTTGAATGAAGATTTATATTTCTCGGCAACTGAAGATGACGAAG
AAATGCTTTGCTCAAAATGCAGGTTTGTCTCCCTACCTTTTTCGAACCTC
TCAAAATGCAGGCTTGTCTCCTTACTTTTTTAAAACCTCTCAAAATGCAG
GTTTGTCTCCATAATTTTTTGAAACCTCTCAAGATGCAGGTTTGTCTCCC
TACTTTTTTCGAACCTCTCAATATAGGTTTGTGTCCCTATTTTTTTCCAA
AACTCAAAACCAATCAACATATTGGTTTATCTCCCTGTTTTTACAAACCT
TTCCAGATACAGGTTTCCCTCCCTTTTTTATCTACCAACAGGCTTAAGAA
AATTCTCCAGGTTACAATGCAAGATTTTTTACCATACATTTCTTAACCCT
TATCACTTAGGTGATTTTGAATAAAGGAATTTTTTTCAGGAAAGTAGAAT
TTTCCTCTGAGCGTAGCGAATGCATTAATCTTATCTTTAAATGATCATTT
TATCAACAGTGTTTCATTTAAATCGTCAATCTTGCAATGTTAATAGTATA
AACTTTTTGATTGACGGGTATAAATTCAGAAAAAAAGAATGATACCTCAC
ATAGTGAGGGAATTTTTAATGAACGAATTATCGATTTTTTTTCGTACCAG
TAAAAGATCTATAATACAGCTTCGAACGTTTTATAATATGGTCGTTCTGA
TTTAATTACAGCCTTAACCCTTTCCGCCCGAAATTTATCATTTTTTACAA
GATTTTTGTATTAGGTGGTTTGAAATAAAAAAAATGAATAGTTACAAACT
TTTCTATGTTGAAAAATAACTATTCTACAATGTTCAACTCAAAATTATAG
TCATTGGCTAATACTTCATATATTATTCAGAAAATGCTAAAAAAAAGCGA
CGGGCAGTTAAAGGGTTAAATAATTTTCCAAGGATATTTCGATGTTTGAA
GAAATTATTTGTCATTTTCCATTTTGGTTTTTTATCTTTCAAAATTTGTT
CGGTTTGATTCATTAACAAAAAGGAAATTGGTTTTCAGCCGATAGAAAAT
CTAATTACATTTTCTTGTCCGTATCTCTTCAGACAGTTTCGTAACTCCAT
CTTCTTGTCATCGTTTGTCTTCTTAATTCCACACAATAATGTCTTGACAA
GAATTTGGAAAATTTATAAAGAATTTTGTATAAGTCGTTAACTACCGCTC
CTTAGATTTAAATTTAGACTGATTTTTTGATAGATGTTATCAATTTCCTT
GGCGGATACTTTCATTTGTTTTGGAATTCCATGTATACTTTAGATTGTTA
TTAGCAATATTTTTAGGTTTCAGAGATTCCGGAATAGGGCTAAAAATGAC
CCTGTTCTGATATTCCTATAATTGACGGATCAACAAGCTTGTCAGTTTAT
AACCTAATATTCGACAATTACTACCCCTCAAAGGAGACCCCCTTATTTTG
AACTACAGTCTTTCTACTCTCTCAGAATAATATGTAAACTAATAATATGG
TGGGTTCATCATTAGATTTAGATTCTAACGGTAGATAGCAAAACCAAAGC
AAGGCGATCTTAGGCAAGTCTTTCAAAATTAGATTTTACTGAAAACCCAC
TACACGAGATTGACGTAGATTTGACGAATTTGTCTCCCCTATCGTGATAT
AAAAGTCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAAACGCGGGTGA
CGTCTAGTATAGGCTATCCCCTATCGTGATATTTCAATGTAAGTGCCAAT
TATGCTATACAGTCTCCCATAAAAAACCTTTCATGCCTGCCAAGTTGAAT
TCAGCTCGTCAACAACATGTGACGATTTTATCTCCTTAATATGTCTTTTT
TGGAATTACAAGCGTGCTACTATTTCCGTCGACGGGAAATCAAACTCATT
AAAATATGTTGGTTCATTTCTCATTAAAAGTGATTGTTTTTTTATGAAAA
GCAACCCTAATCTTCCTTTGAATTTAATTAAAAGAAATTTTGGTGTATTT
TGCAACATAATTTTGTAAAATTTAGGAAAAACCGATATCTTTTGGTTTTT
GAATAATGCTCATTTTTTGATTGCATCTTTTCGCCTGATTTTTCAGTCAT
GAAATTTGTACTAAAATTACGACTAGCTATTTGGTAAATTTACTTGCAAT
TCTTCTTATGCCTAAAATAAAGTTTCGAAAATTGCTTGAAAATTATCGTC
TAATCATTACGGTTAAATTGCCATATGAACAGACAGACATTATAAATACT
GCAACCAAAACAAAGCTATTAGTAAAAAAACTCCAAGTTGACAGTTTAAT
AGGGTGTTTGGTTGACACTTCGATCTTTTGCTGTTAATCATCTAAATGCA
ATTTTAAGTACCGCAATTCTTCATTTTCGACATTATTTTCGTAACATTTT
TTTACTGACGCAAATTATAAACGCCTTGTTGTACGCGCGGCCCGGATATT
GGTCATTTAGTTTCTTATGTAACACTACCTAGCGTTTGAATTTTGAATTT
TTTGAAAGAGCGCGAGACGTTTTTGGTTCAAAAGATACCGCACAATTTAC
ATTTCATGATAATTAGTTTTTCTTTTAATTGAAACCTATTTCATATGCTA
GCCTTTGGGTTATTACTTTTATTCATATTCTAGACAAGATGCTCTGCTCC
CTTCACTCTTCTTTTTTTTTCAATAAAGATGGCTAACTTTTCTTCGAGGA
TACACAAGAAAATATAATCACATTATAGCGTTTATCTTCATTACAAACCG
TAATATGAGTTCAGTAATATCTAATGACAGATTTGAAACAAACTCCCGAT
TTTTATCACAGCAAGGGGTCTTCAAACAGAACCCACATAATTGGGTCAAA
AGGTTTTTCAGTTGACCACCATCTTGAAATTTATACAACAATCTACCCTA
AAGAAGATTGACGGCTTATGGGGCTTTGTTGTTGTTGTATGATCTTTGTG
TTTTATAGATCACGCTGCGCTCTTAAACAAATCTCATTAATCAATTAAAA
TTCTCAACCTCTTTTTAAAATGACCGCATAAAATATGAAATTCGTAATTT
TTGATTCGATGAAGACTTTCTTCAATTTATGACGTAGGTCATAAACATAG
CATTATATTTATTCATCAGATTCTAGTCACCAAATATCGACCCGACCTCC
ACCTAACCTTGAAACCTATGACGTCGAATGATTAACTGTCAAAAATATTG
AGGGAATCTTTACCATAAAAGATAAATTTTATATATTATCAAAAATTGTG
ATCAGTTTTTTCTGGATTCTGATTTATAATCCTGGCTGATCTCCTATTAT
AATCGATTCACTATCAACTAAACTCATCATTTAAAACCAAACTTTCAACT
CACAAACTATCGGCTCGAACGAAATGAAATACGCTCATACCTGCTCTATC
AAAATCAGTATGATTCACTTATTTGTCCGAGAAAAATGGTTTCAAAGTCT
ATAATTGAACTGTTGAAACTGCCTAATATTTAAAGAGGTGTGTTTCATGT
TTAGTTTTTAACCATATCTTTTTTCCATTCTCTTTATGTAGGAAAATATG
TCGTCACTGTCGGTGCAGTAGAGAAGATCACTGCTTACTACCGCCTACCA
TACAAGAGAAAACGTACAGTATAAGTAAATTTGCTGACCAACATCCAAGC
AGTATGGGTAATGATGGAGATAGTGGATGCTCGACTGAAGAATATGCATG
GGTGCCACCTGGCGTCTCTGGAGAACTGGTATGTGAAAAAAACTGCTATT
TTCGTTTCTTGACGTACTGTATACAAAAGTTCCGGTTCACTAAGGTTGAA
TGAACGAATGAATTGTTTTTTTTATCGGAAGGATAGTGACTTGGATCCCA
GCTATGGGCATCTATAAGATTTCAAACCAAATTATCAGATTAAAAAAAAG
GGTTTTTGATTGACGTGTGGGATTATTTTTGAGCGTGATGTCTTGATAAA
GTCTTGTGACACATGTTGAATATTCTACATTCTTGAAAATCACTGAAATT
CTACTCATCATTTGTCATTCATGTTAATCTTGTCAGACCTCCTTTCCTCA
ATTGAATGATCATCTACTTTAAAAGTTCATTTTTAGTACAAATCCCTCTT
ACTTTAAACGTATTTCAAATTTCAATACCCCATGATCAGATTTATTACCA
ATTCTGAGGATCATCTTCTCTTGAATGTCATTTTTGATGCATGGATTTGC
AAACTTGGAATAGGGCCTTTTTTGATGTGCAATATTTTGAATTTGAACTT
GCTAAAGAATTGAGAAACTTTGATTCAGAAGACTTGTAAATGTCATTGTT
TATACAAAAGCCAAAAAGTCGAAAGCCCCATACTGCTGCTTGGGTAATAT
TGAAATTCCACAGTTTTATTACGTAACATTTGAACAGTTATAATAAAAAA
TCCGGTTTTTTTTATGGCGGGGGGTAAACCTGGGACCCTTCGCGTTATGA
CCCAGCGTTCTACATAGTGATCTTACCATTCGATATCTCGTACTGACATA
ATTAACCAATGACAACTAAGTTTAATGCAAATTAAACATATATTTAACTT
GTTATTGATTATTGCATTTTTTATCTCGTCAGAGAGAACTTTCTACATCA
TTAGAACAAGATCTCATTAAGCCTCAATCTTTTTTAGGTCAATGCTTACA
TGAACAGTTTACATGAAGACAAAATCCCGTTTGTGAATAGTATTGGTGAA
AACTATCGAGCCAAACAATTATTATACCAACTACCTCCTCATGATAGCGA
TTCAAAACATTGTCATAATTTATCTGAAGAAGAAAAACGTGAACTTCGCA
GTTTTCACGGTCGACGACGTAAAGATTGTTTGGGTAGAGGAAACGTCCGC
TTATTTCCGAACGTTGCGGAAGGAAGTTCGGGTGTCTGCCAACAGGTAAC
GAGAGATTATGTTTTCATTTAAAAGTATTTCTAATGAGTAAATTGTCGAA
GGTTTTTTTAAATGTGGTTTAAAAAAGGGTTTAAATCTTTGTTTATAGAT
GACTTTCTTTCTTGAAAAAGGAAATAAAATATGCTATTACTTCTTTAATA
AAGTGAAGCTTTTTTTTGCAAATGTTCAAACATTTACTTTGTTTCATATC
AGTGTTCCAAACGTATCGTGCCTGGCGAAGTAGTTGTTCACGCCTGGCGA
GCAGGAAAAGAAGCATGCTGGCATCCGGCTTGTTTTCAATGTACCACGTG
TCAAGAATTGTTGGTTGATCTGGTGTATTTCTACCAAGAGGGACGCGTCT
ATTGCGGACGTCATCATGCTGAATTGTTGAAACCTAGATGTTCAGCTTGT
GACGAGGTTAGTNGGGACGCGTCTATTGCGGACGTCATCATGCTGAATTG
TTGAAACCAAGATGTTCAGCTTGTGACGAGGTTAGTGTTTAATAAAAGCT
TTCTATCTTAAATGCCTTTGCTTGTACTTTCTACCAAGGTTGCATGCTAA
ACAGGCTATTTCTTGTTAGGGGAGAAAATATTTCACTCTACCGTAGGTGT
TTTATTCATAAGTTAAAGTTTTAATTTGTGGACTTTTTTTTTGGACTATG
AAGTTCACTTACTTAACCTTTTTTTGCCTTTCATTTTTCAGATCATTTTC
TCGGATGAGTGTACAGAAGCAGAGGGTCGTTTCTGGCATTTGGGACATTT
CGCATGTTACGAGTGTGACAGTTCACTCGGTGGACAACGTTACGTCATGC
GTGATAACCATCCAATTTGTTGCGTCTGTTTTGAGAAAATGTTCGCTGAG
TTTTGCGATTCGTGTGGAGAGCCGATCGGTATCGATGTCGGTCAAATGGC
ACACGGCAGTCAACATTGGCACGCGAATGAGAAATGCTTCAGCTGTTTCA
ATTGCGGACAAACGTTACTCGGCCAACCATTTCTACCGAAAAACGGAGAA
ATCTTTTGCTCTTCCGGTTGTAGTCGGGGCATCCCACCACCGAATCCGGT
TAACCCGAAATATCCTCCTCGATCAGCGTCAAGAAACCGATCTTACAGAC
CGTCGTCAGAAAGTTCAAACAATAATTCACGCGACGGGTATGTCAGTTCC
AGTACAATGTCACCTGAACCGGTTCGCAAAATCGTCGAAATCAGATCGAA
GGCTAGTTATCGAAGTTCTTTGGATAAATACGGTCTAGCAGCAGCAGAGA
AAATCGGTGATATAGTACGTAATATGCCGAACGGTGGCGTAATAAAGGAA
GAAAGTGACGAAAAAGACGAGACGAGTTCCACTTGTTCTTCCGTCGCTTC
CTCAAGAGCGAAGGAACTTCCATCCTTTCCTCCCAGTAATCGTCACAGTA
AGAAACCTATACTTCGTGTTCCCCCGAAACAAAGACCTAAACCTACGGGA
CCGGAGATTTGGATCGATATGGTACCCCCTAAAGAAGCGACCACGCATCG
TAAACAAGAAGAGGACTGGGAGAAACAATCTGTACGGAGCATGCGCAGTA
ACCGAAGCACGACGTCGACTAAAAAATATGGCGACGCTATGAGTCATTTG
AACGGTAATGATACTATAGAAAGACTTGTCCAAGGTGAACGACAAATTAA
TCGTCGGCACCGACGTCGGAAAGTTGACGATTCATATTTCTCGGACTACG
AAGTTGAGAGACGAAAACGCACGCAAAGACGTAAACAAACTCCTCTCGTT
TATCAAATGGACGACGAAAAACCTAACATCCCTCTTATGACTGTTAAATC
GCGTTCAACAGAATCGTTAGACGCGGGAAAAGCGCGTGTAGCGGGTCGCC
GTGACGAACGGGACGGTAAAAAGAAACGCACTAAATCGGAAACGAATTTA
ACGAACTCTAAAAATTACAAATCGAAAAATGACGCAGTTGCAAACTTAAG
ACTGAACATTGATGTCAATTCGCCGAAGAAACAATCTTACAATAAAATGG
AGTTGAGTAAGAAAGCAACCAATAAAAAAACAGAATCTAACGACTCCCGT
AAACCAGCCCGTTCTTTCGGTATGTTTTCGGCTGAAGATCAACAAATGAC
TCGAATTAATTACGTCACACAAGACGATATGGCTATGGACCATCGAAGAA
ATAGTAAAAGTCCCAAAAAATCAAAAAGGAAAAGTAAAAACCAAGGGCAA
TGTGTTATCTCATAACCATTTCATAGTTAATATTTTATTTTTTATTCCAC
TGATCTAGCTCTCTCCTTACATTTGAAAATTATGCATTTTTAACTTTTTT
TGGTTTTATATTTTTAGTTTTACTAAAATCTATTTTACATCATTCCTCTA
GTGTATTATGGCAATGATTTGGAGAACTGAGTTTTTCACTCAGTTTAATG
TTAAATCTGCACACATAATATGTAATAATAATTTTGAAATTGGTTCGTCT
TAGATCCCAAGGTAATTAAAAGATTCAGAAATGTTGAATCCAAAAAGTGG
TTCAAGTCTCAAGGCTCTGGGTACGATATTAGATCATAAATCAAATGATC
GTGAAATGTATTTTTTCATTGTGAAATATATTAGAATATGTTAGGTTTAG
TGCTCCGTGTGCAGGCTGTGAAAAATTCACCGCCGGGTGTCAATTAAATT
ATGTATTTTCTTAAGTGTTGTTATATATACAAAAGGAAAATAAAAAATGT
AAATAATGAAATAACAAAATGTTAATAAAACAAAGTAAAATCTATGTTTG
CTAATCTGAGTAAGAATTTCTTACAAGGACGGTCTACCCAGGGAGCTGGA
ACAGTCTTTTCGGTCTGTAATAGCGAACAACTCTGTCGACCCTGGGTTTT
TCTTTTAAGGGAAATTTGAGTGAATTCAAAAACTTCTCTATTAGTAGGGG
GAAATTTGTAAAATCGCTCGACTTTTTTAGTCAAAGCACTTGTTATACAT
TTTTGGTAAGCTAAGGGGTAGGGGAATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010268XLOC_010268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018275-exon-sc0000295-1575043694:82916..83187TCONS_00018275-exon-sc0000295-1575043694:82916..83187Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1575043694:79260..79446TCONS_00018275-exon-sc0000295-1575043694:79260..79446Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1575043694:78093..78350TCONS_00018275-exon-sc0000295-1575043694:78093..78350Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1575043694:77705..77885TCONS_00018275-exon-sc0000295-1575043694:77705..77885Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1575043694:77608..77630TCONS_00018275-exon-sc0000295-1575043694:77608..77630Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1575043694:75106..77396TCONS_00018275-exon-sc0000295-1575043694:75106..77396Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1510915933:82916..83187TCONS_00018275-exon-sc0000295-1510915933:82916..83187Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1510915933:79260..79446TCONS_00018275-exon-sc0000295-1510915933:79260..79446Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1510915933:78093..78350TCONS_00018275-exon-sc0000295-1510915933:78093..78350Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1510915933:77705..77885TCONS_00018275-exon-sc0000295-1510915933:77705..77885Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1510915933:77608..77630TCONS_00018275-exon-sc0000295-1510915933:77608..77630Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1510915933:75106..77396TCONS_00018275-exon-sc0000295-1510915933:75106..77396Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1491911889:82916..83187TCONS_00018275-exon-sc0000295-1491911889:82916..83187Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1491911889:79260..79446TCONS_00018275-exon-sc0000295-1491911889:79260..79446Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1491911889:78093..78350TCONS_00018275-exon-sc0000295-1491911889:78093..78350Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1491911889:77705..77885TCONS_00018275-exon-sc0000295-1491911889:77705..77885Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1491911889:77608..77630TCONS_00018275-exon-sc0000295-1491911889:77608..77630Clytia hemisphaericaexon
TCONS_00018275-exon-sc0000295-1491911889:75106..77396TCONS_00018275-exon-sc0000295-1491911889:75106..77396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:75106..83187 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13475e-09	0	0	0	0.00171485	2.97865e-09	7.28939	1.6993	2.37718e-06	3.51146	1.60496	2.55919	1.4042e-05	6.06518e-09	0.681644	4.79468	0.254455	0.248889	1.20563	1.40922	0.000212154	0.121253	0.667513	2.30962	0	0	0.258153	1.01484	0.0167312	0.0140945
Blast
[Close]
BLAST of TCONS_00018275 vs. Swiss-Prot (Human)
Match: PRIC3 (Prickle-like protein 3 OS=Homo sapiens GN=PRICKLE3 PE=1 SV=2)

HSP 1 Score: 400.593 bits (1028), Expect = 1.409e-125
Identity = 193/330 (58.48%), Postives = 246/330 (74.55%), Query Frame = 1 
Query:  271 RKICRHCRCSREDHCLLPPTIQEKTYSISKFADQHPSSMGNDGDSGCSTEEYAWVPPGVSGELVNAYMNSLHEDKIPFVNSIGENYRAKQLLYQLPPHDSDSKHCHNLSEEEKRELRSFHGRRRKDCLGRGNVRLFPNVAEGSSGVCQQCSKRIVPGEVVVHAWRAGKEACWHPACFQCTTCQELLVDLVYFYQEGRVYCGRHHAELLKPRCSACDEIIFSDECTEAEGRFWHLGHFACYECDSSLGGQRYVMRDNHPICCVCFEKMFAEFCDSCGEPIGIDVGQMAHGSQHWHANEKCFSCFNCGQTLLGQPFLPKNGEIFCSSGCSRG 1260
            RKIC+HC+C RE+H +    +  +       +D    S+ +D DSGC++EEYAWVPPG+  E V  + + L EDK+P+VNS GE YR KQLL+QLPPHDS++++C  L EEEK+ELR+F  +R+++ LGRG VR+FP    G+  +C++C K+I  G++ V A RAG  ACWHP CF CTTCQELLVDL+YFY  G+VYCGRHHAE L+PRC ACDEIIFS ECTEAEGR WH+ HF C+EC++SLGGQRYVMR + P CC C+E   AE+CD CGE IG+D GQMA+  QHWHA+++CF C  CG+ LLG+PFLP+ G IFCS  CS G
Sbjct:   43 RKICQHCKCPREEHAVHAVPVDLERIMCRLISDFQRHSISDD-DSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGIVRIFPVTITGA--ICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLG 369
The following BLAST results are available for this feature:
BLAST of TCONS_00018275 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRIC31.409e-12558.48Prickle-like protein 3 OS=Homo sapiens GN=PRICKLE3... [more]
back to top