TCONS_00018232 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018232
Unique NameTCONS_00018232
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1810

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018232 ID=TCONS_00018232|Name=TCONS_00018232|organism=Clytia hemisphaerica|type=transcript|length=1810bp
GTTAAATTTGTTCTTGTGCTCCCCTCCTCTGATGAACATGGGTGTTGGCC
ACAAGTGGCTTTATTAATGTCACACCATattataaaacaaaattgaaatg
attATTATATTAACATTTTTCACTTCCACAATAGAAAACATATTATTGAA
TTataatagaaaaatcaaaacaaaattgtacTGAGATCAGGTTAGTTTGT
TCAAGATGacaaaagaagaagaagcaaaTGCAGCATCAATTGATGTTGTG
CGTATCGATTCAACTGATACTGATCGCAAACCGAAATCATGTTGTTTGTG
TTTGAATGTCAGAATTGGTACTATCATGATTGGTCTTTTCAACTTGGTTT
GCCATGCTTTTTGGATTGTATCCCTTTCTTCGTACATCAAAAAGCATCAG
TCAACTGAATTGTCTAAACATTTGAAAGAATGGAAAGTGATCAATCATTT
CAGTGATTTTGCTCAACAACACCAACAAAATATCAACCACAATATGATTG
CTATGGTTGTTGCTTGCCTGAGCTTTTTGATTGTTGTCATGTTGGTCTAT
GGAGCCACACTGAGATTGTCCGGATACATCTTGCCCTTCTTCTGTTTACA
AGTGTTCGATTTGTGTTTATCGGTCCTCGTCTTTGCCACCGTTACCAGCT
ATGCACCACAActgaaatactacttggaagtcTCCGCCCATGATGAAGTC
CATCGTCAATACCTTCAAAATATGAGTTTAACTCATTTCAGAATGGTCTT
GTTTTCTTTCTGGATTGTCGTCCTTGCTGTCAAGTATTATTTCGCTAATA
CTGTTTGGGAATGTTATTGCCATTGCAAGAAAATGGAAGAACGAAGAAAC
GTCCGCACTGACAACCAAGCTGCCATTTTGTTGTACCAAGGAGATATGGA
AACCATGAATTTGTTGCCAACATACGATGACGTTGTCAAGACCAGCCCTC
CACCTGCTTACATCCAATAAACGTACAAAGTATGTCCATTCGAAATGACG
GTGTGTGTCAACTCGCACGAGGTGTGTGGGCGCAGTTTTTCACCCTCATT
CATTCATAATTTACTCGCAAATTTACtcagtttttctaaaaaaataaaaa
ctttattatCATGGTAATCTTTTATAGTTTTGAAGGCTGTAAGGTACTTC
TTGGGAATTGTATTGAAAATACTTTTAGTTCTGTTTTAAATTAAGTTTAT
TAGCTAAGTATTGAGAGGGAATCAATTGTGtgctttcttttatttgaaga
TACTATTTATAACAATGAAACTTCGATTTGGGACTTGcttttttttatag
attttaaaGATTCTGACAGGTAGCTTAAGAATTTGATTTCTTAAAAACTT
TGCTGGCATGtacaatttataaaattttatcttTAACAATTTGTCTTATT
CCATTTGACCTAAACTTTTTTCATACGCGGGGTACAGATGagatttgaat
atcttttcgtcaaaaaagaaattcagcTGCTTTCTGCATCCTTCTCATTT
TTTTCCATTGtacttttttcagtttttgtatcaaaatttcttatttttct
cgGAAAAAGTATGTGCTGGTAATTCTTCCTtctctattttttttaaactt
tctttaaatAGTTGTGAATAAAAAAAACTCTCTCCTCTTCAGGAGATTTC
ACCTGCCCAAATTTCGTAAAAATACCTCCGGCAAAATCTATTACTCTAGC
TGTATTTTTCAAGATATAttcttttgatgaaaaatagctTCAATTAGTAG
GGGGCAAGCCttgggttccgtgacatcttttctacgacctagccattttt
agtctattcc
Run BLAST on NCBI

transcript from alignment at sc0000291:358651..364430-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018232 ID=TCONS_00018232|Name=TCONS_00018232|organism=Clytia hemisphaerica|type=transcript|length=5780bp|location=Sequence derived from alignment at sc0000291:358651..364430- (Clytia hemisphaerica)
GTTAAATTTGTTCTTGTGCTCCCCTCCTCTGATGAACATGGGTGTTGGCC
ACAAGTGGCTTTATTAATGTCACACCATATTATAAAACAAAATTGAAATG
ATTATTATATTAACATTTTTCACTTCCACAATAGAAAACATATTATTGAA
TTATAATAGAAAAATCAAAACAAAATTGTACTGAGATCAGGTTAGTTTGT
TCAAGATGACAAAAGAAGAAGAAGCAAATGCAGCATCAATTGATGTTGTG
CGTATCGATTCAACTGATACTGATCGCAAACCGAAATCATGTTGTTTGTG
TTTGAATGTCAGAATTGGTACTATCATGATTGGTCTTTTCAACTTGGTAT
GAACAATGTTGTAATTTCATTATTTTGAGGGACAAAATAATAGCAAAACA
GTTGAAAGCTATCATGAAAATCACATTCCTGTATATTATATTTTTGTACA
GAAAACATGTACATGTCAACATCATTTGCCATATATAAATAGTACTCAAA
ACGTTTTTAGTTTTGTATCAATATTGTAAGGGTCTTATGGAAATACATGT
TAGATCTGTAAAACATTAAGTTGAATTAGTCATTCTATTTGAAAACAAGG
CCATCAATGAGTCTGTTTTTCTAGATTGAGGGAAGAGTAAGCACTCAATT
TAAAGATCCTCTGCAGAGTATTAAAGCCTTTCCAAATTCTTTTAGGTTTG
CCATGCTTTTTGGATTGTATCCCTTTCTTCGTACATCAAAAAGCATCAGT
CAACTGAATTGTCTAAACATTTGAAAGAATGGAAAGTGATCAATCATTTC
AGTGATTTTGCTCAACAACACCAACAAAATAGTAAGTGGTCTATTTGATT
CAATCTATTTGGTGCGAGTTGCTATAATACTTATTTATAAGAAAATGAAA
ATTTAAATTCTATAAAATGAACTTAATCCTTCCTATTTCGTGAAAGAAGC
TAGTAATGGTCTATAATGATTTTATTTTGTAGTCAACCACAATATGATTG
CTATGGTTGTTGCTTGCCTGAGCTTTTTGATTGTTGTCATGTTGGTCTAT
GGAGCCACACTGGTAAGCATTACAAAATGCTAATCTTACTTATATACAAT
TATATGTATTGTTCTAGATGTTTGTTTATATTATTGACTTATGATTTTGT
GTGATTTCTCGTGGAATTATTACTAAATATTGTTATATGCTTACTCTAAA
GGGTTATATTTGTTTTATGCTTTTGCTGTAGATAAACTAAAGTTTTTGAA
ATTGAACTGGTCGAAATGAATAAAGAACACTCGAATGTTTTTTCTAAATA
AGTATTGCACATGACATTATGTTTTTTACAGAGATTGTCCGGATACATCT
TGCCCTTCTTCTGTTTGCAAGTGTTCGATTTGTGTTTATCTGTTCTGGTC
TTTGCCACCGTTACCAGCTATGCACCACAACTGAAATACTACTTGGAAGT
CTCCGTAAGTATCACTCCATCTATGTTTATGATACTTCCCAATATTATAT
CGATTTTGTGAACAGGTGTCGGGTTCTACATTTGTATAAATGTTGTTTCT
TTAAAGCTACAGTAAGCTGTATCTCCTTCCCTTCGAGTTAAAAACCTAAA
AGCCNCTGTCAACATCATTTGCCATATATAAATAGTACTCAAAACGTTTG
TAGTTTTGTATCAATATTGTAAGGGTCTTATGGAAATACATGTTAGATCT
GTAAAACATTAAGTTGAATTAGTCATTCTATTTGAAAAAAAGGCCATCAA
TGAGTCTGTTTTTCTAGATTGAGGGAAGAGTAAGCACTCAATTTAAAGAC
CCTCTGCAGAGTATTAAAGCCTTTCCAAATTCTTTTAGGTTTGCCATGCT
TTTTGGATTGTATCCCTTTCTTCGTACATCAAAAAGCATCAGTCAACTGA
ATTGTCTGAACATTTGAAAGAATGGAAAGTGATCAATCATTTCAGTGATT
TTTCTCAACAACACCAACAAAATAGTAAGTGGTCTATTTGATTCAATCTA
TTTGGTGCGAGTTGCTATAATACTTATTTATAAGAAAATGAAAATTTAAA
TTCTATAAAATGAACTTAATCCTTCCTATTTCGTGAAAGAAGCTAGTAAT
GGTCTATAATGATTTTATTTTGTAGTCAACCACAATATGATTGCTATGGT
TGTTGCTTGCCTGAGCTTTTTGATTGTTGTCATGTTGGTCTATGGAGCCA
CACTGGTAAGCAATACAAAATGCTAATCTTACTCATAATTATATACAATT
ATATGTATTGTTCTAGCTGTTTGTTTATATTATTGACTTATGATTTTGTG
TGATTTCTCTTGGAATTATTACTAAATATTGTTATATGCTTACTCTAAAG
GGTTATATTTGTTTTATGCTTTTGCTGTAGATAAACTAAAGTTTTTGAAA
TTGAACTGGTCGAAATGAATAAAGAACACTCGAATGTTTTTTCTAAATAA
GTATTGCACATGACATTATGTTTTTTTACAGAGATTGTCCGGATACATCT
TGCCCTTCTTCTGTTTACAAGTGTTCGATTTGTGTTTATCGGTCCTCGTC
TTTGCCACCGTTACCAGCTATGCACCACAACTGAAATACTACTTGGAAGT
CTCCGTAAGTACCACTCCAACTATATTTATGATACTTCCTAATATTGTAT
CGATTTTGTGCACCGGTGTTGGGTTCTACTTTTGCTTTAAATATTGTTTC
TTTAAAGCTACAGTGAGCCATGTCATATCTCATTCACTCCGAGTTAAAAA
CCTAAAAGTGTAAATCACTTTGAGGCCAGATAAAAAAAATTCAGTGATCC
CAAATGCCAATGCATCCCCCAGGAAAGCCAATTCACTTTTTTTAAGTAGC
TAGATTCAACATACATTTCAACATACATTTCAAATGAATCAATTATTCAT
TTGTTCTCTTTACAGGCCCATGATGAAGTCCATCGTCAATACCTTCAAAA
TATGAGTTTAACTCATTTCAGAATGGTCTTGTTTTCTTTCTGGATTGTCG
TCCTTGCTGTCAAGGTATTGATTTTGTCATTTTAATTTAACTTTCAAATT
AAGATTACAGTCAACTCTCTCTTATTCGAATCTTTCTGTAATTCGAATCC
TTTTCTAATTTGAAGAAAGTTTTTGGTTCCTCGAAGATCGAATTAGAAAG
AGTAAACTGTATTTGTCTAAAATTTATTTTTAAAAAGATGTCTTAAAATT
TTGTCTCATGGGTGGCCCTAAGAATACTGAGAATAAACACAAAAAGGCTC
TTTGATGTTGATGTGACTTTACCATTTTTGGGAAGATGAGGAATAGCTCA
TACGAGGAAATATTTTCTGGTATGATATCATTTTGTAACAGTTTAAGATT
GAATTAGAAAGAAGTATAATATAATTTTCTATAATTATCTGTTTTCTAAA
ACATCAATCTCGTTTAACATCATAGTATTATTTCGCTAATACTGTTTGGG
AATGTTATTGCCATTGCAAGAAAATGGAAGAACGAAGAAACGTCCGCACT
GACAACCAAGCTGCCATTTTGTTGTACCAAGGAGATATGGAAACCATGGT
AACTCTTCTCTTTTGTTGTTAATGTTAACGTCTCTGATGTCATTTAACAC
AACAAAATACCGTATTTGTTTGCTTAGACCTACACGCCACTAAAATTCAT
GATTATGTGACCCTATAATTATTATCTTGGTTTTAAGTGGGTATGTTTGG
TTAGGTGGATAATTAGTCAAAAGCTTTTGAAAACTATTTTTACGAATTCG
GCTCTTCCAGAAAAAATTCGTTCATGGGGGTGGAGGATATTATTTTTTCA
ATGATCTACCCCTGGGCATTTAAATTTTTCACCCCCCGGACACGCGTTTT
ATCCCTGGACAAGCATCAAATCGGCCCCCTGGACAGTATGTCTTCTACCC
CCTACGAGGGTTTTTTTTCTGGAAGAACCCATTTCAAATAATGGTAGGGA
AAGTTAACAAAATGAGGGGTGTTCGAATTGATCAGTCTAATTTTTCATAC
ACTGACAACTTTTTAGTGGGTGGGCGGCTCTAACGAGACCAATGTCAACA
ACAAAATACAGTGTAATGGTTTTTCTATGTTTGGCATACGAATACGAAAC
TCAATATTCAAACATTTTATTTTCGTCTATTTTCTCTGTGGTCAAAATAC
TCTTGTTACAATTTTCTTCGTTAGTCTTTTTCTTGTGATCACATTTCATC
TTACGATGTGTGGAGGTCGTCTTTTGTCAACAAACTATCATCTCATATCC
ACGTGGTCTAATTTCCATAATGGCGGATAATACAATTTTCGTAGCTCTCT
TGACTGAATAGATGAAATTATACAATATAAGAAAAAAAGTCCTCAAATTT
AGCATGCCTTAAAATTCTGTTCGTAATATACGTGCACCATTTTGAAAATA
AATCCAAGCTTACTGTACACTCTGAAGATTGTCGGAGTCAAAATAAAACT
ATAATTTAAGTTAAAAGAGAATTTCCGATTCTAACACTTATTAGTACTTC
CATTTCCGCAGGTTTACCAACCATAACTTACGTTTAGACAGATACTTCAA
TGGGGAAAACTTAACCGGGGAAAAGTGACGAGTTTTTTAGGCAAGTCCCC
CCTCCCCACGAAAGTATTTTTGCTCAACTTCCAGGGGGTTGGTATACAGA
TTTCCAAAAAGTTGACCAAGTTTCCCCCCGGTAGAATAAAGATATACTAT
AGTTTTGTTAATGTCATTAATATTGATTAATCATTTTGTTCTTCTCAGAA
TTTGTTNAACGAAAATTTTGCCTGACTAAATTTTTTACCTTCAAATTTGA
AAAAAAACGGTAGAATAAAAATATACTATAGTTTTGTTAATGTCATTAAT
ATCGATAAATCATTTTGTTCTTCTCAGAATTTGTTGCCAACATACGATGA
CGTTGTCAAGACCAGCCCTCCACCTGCTTACATCCAATAAACGTACAAAG
TATGTCCATTCGAAATGACGGTGTGTGTCAACTCGCACGAGGTGTGTGGG
CGCAGTTTTTCACCCTCATTCATTCATAATTTACTCGCAAATTTACTCAG
TTTTTCTAAAAAAATAAAAACTTTATTATCATGGTAATCTTTTATAGTTT
TGAAGGCTGTAAGGTACTTCTTGGGAATTGTATTGAAAATACTTTTAGTT
CTGTTTTAAATTAAGTTTATTAGCTAAGTATTGAGAGGGAATCAATTGTG
TGCTTTCTTTTATTTGAAGATACTATTTATAACAATGAAACTTCGATTTG
GGACTTGCTTTTTTTTATAGATTTTAAAGATTCTGACAGGTAGCTTAAGA
ATTTGATTTCTTAAAAACTTTGCTGGCATGTACAATTTATAAAATTTTAT
CTTTAACAATTTGTCTTATTCCATTTGACCTAAACTTTTTTCATACGCGG
GGTACAGATGAGATTTGAATATCTTTTCGTCAAAAAAGAAATTCAGCTGC
TTTCTGCATCCTTCTCATTTTTTTCCATTGTACTTTTTTCAGTTTTTGTA
TCAAAATTTCTTATTTTTCTCGGAAAAAGTATGTGCTGGTAATTCTTCCT
TCTCTATTTTTTTTAAACTTTCTTTAAATAGTTGTGAATAAAAAAAACTC
TCTCCTCTTCAGGAGATTTCACCTGCCCAAATTTCGTAAAAATACCTCCG
GCAAAATCTATTACTCTAGCTGTATTTTTCAAGATATATTCTTTTGATGA
AAAATAGCTTCAATTAGTAGGGGGCAAGCCTTGGGTTCCGTGACATCTTT
TCTACGACCTAGCCATTTTTAGTCTATTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010244XLOC_010244Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018232-exon-sc0000291-1575043694:364085..364430TCONS_00018232-exon-sc0000291-1575043694:364085..364430Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1575043694:363600..363735TCONS_00018232-exon-sc0000291-1575043694:363600..363735Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1575043694:362226..362305TCONS_00018232-exon-sc0000291-1575043694:362226..362305Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1575043694:361827..361949TCONS_00018232-exon-sc0000291-1575043694:361827..361949Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1575043694:361417..361515TCONS_00018232-exon-sc0000291-1575043694:361417..361515Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1575043694:360883..361005TCONS_00018232-exon-sc0000291-1575043694:360883..361005Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1575043694:358651..359553TCONS_00018232-exon-sc0000291-1575043694:358651..359553Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1510915933:364085..364430TCONS_00018232-exon-sc0000291-1510915933:364085..364430Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1510915933:363600..363735TCONS_00018232-exon-sc0000291-1510915933:363600..363735Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1510915933:362226..362305TCONS_00018232-exon-sc0000291-1510915933:362226..362305Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1510915933:361827..361949TCONS_00018232-exon-sc0000291-1510915933:361827..361949Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1510915933:361417..361515TCONS_00018232-exon-sc0000291-1510915933:361417..361515Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1510915933:360883..361005TCONS_00018232-exon-sc0000291-1510915933:360883..361005Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1510915933:358651..359553TCONS_00018232-exon-sc0000291-1510915933:358651..359553Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1491911889:364085..364430TCONS_00018232-exon-sc0000291-1491911889:364085..364430Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1491911889:363600..363735TCONS_00018232-exon-sc0000291-1491911889:363600..363735Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1491911889:362226..362305TCONS_00018232-exon-sc0000291-1491911889:362226..362305Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1491911889:361827..361949TCONS_00018232-exon-sc0000291-1491911889:361827..361949Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1491911889:361417..361515TCONS_00018232-exon-sc0000291-1491911889:361417..361515Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1491911889:360883..361005TCONS_00018232-exon-sc0000291-1491911889:360883..361005Clytia hemisphaericaexon
TCONS_00018232-exon-sc0000291-1491911889:358651..359553TCONS_00018232-exon-sc0000291-1491911889:358651..359553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:358651..364430 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.31621	8.79079	0.490909	20.6959	2.1004	0.222661	0.0264083	9.2069	0	0	0	0	0	0	0	1.43963e-05	0.000261527	0.00327423	0.000715091	4.50152e-08	0.000678374	1.01627	1.90864	4.8461	0	4.92428e-08	1.89493	2.52786	0.00484363	0.856636
Blast
[Close]
BLAST of TCONS_00018232 vs. Swiss-Prot (Human)
Match: LAP4B (Lysosomal-associated transmembrane protein 4B OS=Homo sapiens GN=LAPTM4B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.382e-20
Identity = 71/237 (29.96%), Postives = 114/237 (48.10%), Query Frame = 2 
Query:  284 KSCCLCLNVRIGTIMIGLFNLVCHAF-WIVSLSSYIKKHQ----STELSKHLKEWKVINHFSDFAXXXXXXXXXXMIAMVVACLSFLIVVMLVYGATLRLSGYILPFFCLQVFDLCLSVLVFATVTSYAPQLKYYLEVSAHDEVHRQYLQNMSLTHFRMVLFSFWIVVLAVKYYFANTVWECYCHCKKMEERRNVRTDNQAAILLYQGDMETMNLLPTYDDV----VKTSPPPAYIQ 967
             SCCLC +VR GTI++G++ L+ +A   ++ LS+     Q    S+EL    +       F D A           IA+ ++ L  LI  M  YGA  + + +I+PFFC Q+FD  L++LV  TV  Y   ++ Y+     +  +R  + +++ T   +++  F  ++L  K Y  + VW CY         R +   N + +L+Y    +T  LLP YDD         PPP Y+ 
Sbjct:  157 NSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPDQYNFSSSELGGDFE-------FMDDANM--------CIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVWNCY---------RYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVS 369
The following BLAST results are available for this feature:
BLAST of TCONS_00018232 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LAP4B4.382e-2029.96Lysosomal-associated transmembrane protein 4B OS=H... [more]
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