TCONS_00018227 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018227
Unique Name	TCONS_00018227
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1681

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000291:358651..364301-

transcript sequence

>TCONS_00018227 ID=TCONS_00018227|Name=TCONS_00018227|organism=Clytia hemisphaerica|type=transcript|length=1681bp
AATAGAAAACATATTATTGAATTataatagaaaaatcaaaacaaaattgt
acTGAGATCAGGTTAGTTTGTTCAAGATGacaaaagaagaagaagcaaaT
GCAGCATCAATTGATGTTGTGCGTATCGATTCAACTGATACTGATCGCAA
ACCGAAATCATGTTGTTTGTGTTTGAATGTCAGAATTGGTACTATCATGA
TTGGTCTTTTCAACTTGGTTTGCCATGCTTTTTGGATTGTATCCCTTTCT
TCGTACATCAAAAAGCATCAGTCAACTGAATTGTCTAAACATTTGAAAGA
ATGGAAAGTGATCAATCATTTCAGTGATTTTGCTCAACAACACCAACAAA
ATATCAACCACAATATGATTGCTATGGTTGTTGCTTGCCTGAGCTTTTTG
ATTGTTGTCATGTTGGTCTATGGAGCCACACTGAGATTGTCCGGATACAT
CTTGCCCTTCTTCTGTTTACAAGTGTTCGATTTGTGTTTATCGGTCCTCG
TCTTTGCCACCGTTACCAGCTATGCACCACAActgaaatactacttggaa
gtcTCCGCCCATGATGAAGTCCATCGTCAATACCTTCAAAATATGAGTTT
AACTCATTTCAGAATGGTCTTGTTTTCTTTCTGGATTGTCGTCCTTGCTG
TCAAGTATTATTTCGCTAATACTGTTTGGGAATGTTATTGCCATTGCAAG
AAAATGGAAGAACGAAGAAACGTCCGCACTGACAACCAAGCTGCCATTTT
GTTGTACCAAGGAGATATGGAAACCATGAATTTGTTGCCAACATACGATG
ACGTTGTCAAGACCAGCCCTCCACCTGCTTACATCCAATAAACGTACAAA
GTATGTCCATTCGAAATGACGGTGTGTGTCAACTCGCACGAGGTGTGTGG
GCGCAGTTTTTCACCCTCATTCATTCATAATTTACTCGCAAATTTACtca
gtttttctaaaaaaataaaaactttattatCATGGTAATCTTTTATAGTT
TTGAAGGCTGTAAGGTACTTCTTGGGAATTGTATTGAAAATACTTTTAGT
TCTGTTTTAAATTAAGTTTATTAGCTAAGTATTGAGAGGGAATCAATTGT
GtgctttcttttatttgaagaTACTATTTATAACAATGAAACTTCGATTT
GGGACTTGcttttttttatagattttaaaGATTCTGACAGGTAGCTTAAG
AATTTGATTTCTTAAAAACTTTGCTGGCATGtacaatttataaaatttta
tcttTAACAATTTGTCTTATTCCATTTGACCTAAACTTTTTTCATACGCG
GGGTACAGATGagatttgaatatcttttcgtcaaaaaagaaattcagcTG
CTTTCTGCATCCTTCTCATTTTTTTCCATTGtacttttttcagtttttgt
atcaaaatttcttatttttctcgGAAAAAGTATGTGCTGGTAATTCTTCC
TtctctattttttttaaactttctttaaatAGTTGTGAATAAAAAAAACT
CTCTCCTCTTCAGGAGATTTCACCTGCCCAAATTTCGTAAAAATACCTCC
GGCAAAATCTATTACTCTAGCTGTATTTTTCAAGATATAttcttttgatg
aaaaatagctTCAATTAGTAGGGGGCAAGCCttgggttccgtgacatctt
ttctacgacctagccatttttagtctattcc

Run BLAST on NCBI

transcript from alignment at sc0000291:358651..364301-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018227 ID=TCONS_00018227|Name=TCONS_00018227|organism=Clytia hemisphaerica|type=transcript|length=5651bp|location=Sequence derived from alignment at sc0000291:358651..364301- (Clytia hemisphaerica)
AATAGAAAACATATTATTGAATTATAATAGAAAAATCAAAACAAAATTGT
ACTGAGATCAGGTTAGTTTGTTCAAGATGACAAAAGAAGAAGAAGCAAAT
GCAGCATCAATTGATGTTGTGCGTATCGATTCAACTGATACTGATCGCAA
ACCGAAATCATGTTGTTTGTGTTTGAATGTCAGAATTGGTACTATCATGA
TTGGTCTTTTCAACTTGGTATGAACAATGTTGTAATTTCATTATTTTGAG
GGACAAAATAATAGCAAAACAGTTGAAAGCTATCATGAAAATCACATTCC
TGTATATTATATTTTTGTACAGAAAACATGTACATGTCAACATCATTTGC
CATATATAAATAGTACTCAAAACGTTTTTAGTTTTGTATCAATATTGTAA
GGGTCTTATGGAAATACATGTTAGATCTGTAAAACATTAAGTTGAATTAG
TCATTCTATTTGAAAACAAGGCCATCAATGAGTCTGTTTTTCTAGATTGA
GGGAAGAGTAAGCACTCAATTTAAAGATCCTCTGCAGAGTATTAAAGCCT
TTCCAAATTCTTTTAGGTTTGCCATGCTTTTTGGATTGTATCCCTTTCTT
CGTACATCAAAAAGCATCAGTCAACTGAATTGTCTAAACATTTGAAAGAA
TGGAAAGTGATCAATCATTTCAGTGATTTTGCTCAACAACACCAACAAAA
TAGTAAGTGGTCTATTTGATTCAATCTATTTGGTGCGAGTTGCTATAATA
CTTATTTATAAGAAAATGAAAATTTAAATTCTATAAAATGAACTTAATCC
TTCCTATTTCGTGAAAGAAGCTAGTAATGGTCTATAATGATTTTATTTTG
TAGTCAACCACAATATGATTGCTATGGTTGTTGCTTGCCTGAGCTTTTTG
ATTGTTGTCATGTTGGTCTATGGAGCCACACTGGTAAGCATTACAAAATG
CTAATCTTACTTATATACAATTATATGTATTGTTCTAGATGTTTGTTTAT
ATTATTGACTTATGATTTTGTGTGATTTCTCGTGGAATTATTACTAAATA
TTGTTATATGCTTACTCTAAAGGGTTATATTTGTTTTATGCTTTTGCTGT
AGATAAACTAAAGTTTTTGAAATTGAACTGGTCGAAATGAATAAAGAACA
CTCGAATGTTTTTTCTAAATAAGTATTGCACATGACATTATGTTTTTTAC
AGAGATTGTCCGGATACATCTTGCCCTTCTTCTGTTTGCAAGTGTTCGAT
TTGTGTTTATCTGTTCTGGTCTTTGCCACCGTTACCAGCTATGCACCACA
ACTGAAATACTACTTGGAAGTCTCCGTAAGTATCACTCCATCTATGTTTA
TGATACTTCCCAATATTATATCGATTTTGTGAACAGGTGTCGGGTTCTAC
ATTTGTATAAATGTTGTTTCTTTAAAGCTACAGTAAGCTGTATCTCCTTC
CCTTCGAGTTAAAAACCTAAAAGCCNCTGTCAACATCATTTGCCATATAT
AAATAGTACTCAAAACGTTTGTAGTTTTGTATCAATATTGTAAGGGTCTT
ATGGAAATACATGTTAGATCTGTAAAACATTAAGTTGAATTAGTCATTCT
ATTTGAAAAAAAGGCCATCAATGAGTCTGTTTTTCTAGATTGAGGGAAGA
GTAAGCACTCAATTTAAAGACCCTCTGCAGAGTATTAAAGCCTTTCCAAA
TTCTTTTAGGTTTGCCATGCTTTTTGGATTGTATCCCTTTCTTCGTACAT
CAAAAAGCATCAGTCAACTGAATTGTCTGAACATTTGAAAGAATGGAAAG
TGATCAATCATTTCAGTGATTTTTCTCAACAACACCAACAAAATAGTAAG
TGGTCTATTTGATTCAATCTATTTGGTGCGAGTTGCTATAATACTTATTT
ATAAGAAAATGAAAATTTAAATTCTATAAAATGAACTTAATCCTTCCTAT
TTCGTGAAAGAAGCTAGTAATGGTCTATAATGATTTTATTTTGTAGTCAA
CCACAATATGATTGCTATGGTTGTTGCTTGCCTGAGCTTTTTGATTGTTG
TCATGTTGGTCTATGGAGCCACACTGGTAAGCAATACAAAATGCTAATCT
TACTCATAATTATATACAATTATATGTATTGTTCTAGCTGTTTGTTTATA
TTATTGACTTATGATTTTGTGTGATTTCTCTTGGAATTATTACTAAATAT
TGTTATATGCTTACTCTAAAGGGTTATATTTGTTTTATGCTTTTGCTGTA
GATAAACTAAAGTTTTTGAAATTGAACTGGTCGAAATGAATAAAGAACAC
TCGAATGTTTTTTCTAAATAAGTATTGCACATGACATTATGTTTTTTTAC
AGAGATTGTCCGGATACATCTTGCCCTTCTTCTGTTTACAAGTGTTCGAT
TTGTGTTTATCGGTCCTCGTCTTTGCCACCGTTACCAGCTATGCACCACA
ACTGAAATACTACTTGGAAGTCTCCGTAAGTACCACTCCAACTATATTTA
TGATACTTCCTAATATTGTATCGATTTTGTGCACCGGTGTTGGGTTCTAC
TTTTGCTTTAAATATTGTTTCTTTAAAGCTACAGTGAGCCATGTCATATC
TCATTCACTCCGAGTTAAAAACCTAAAAGTGTAAATCACTTTGAGGCCAG
ATAAAAAAAATTCAGTGATCCCAAATGCCAATGCATCCCCCAGGAAAGCC
AATTCACTTTTTTTAAGTAGCTAGATTCAACATACATTTCAACATACATT
TCAAATGAATCAATTATTCATTTGTTCTCTTTACAGGCCCATGATGAAGT
CCATCGTCAATACCTTCAAAATATGAGTTTAACTCATTTCAGAATGGTCT
TGTTTTCTTTCTGGATTGTCGTCCTTGCTGTCAAGGTATTGATTTTGTCA
TTTTAATTTAACTTTCAAATTAAGATTACAGTCAACTCTCTCTTATTCGA
ATCTTTCTGTAATTCGAATCCTTTTCTAATTTGAAGAAAGTTTTTGGTTC
CTCGAAGATCGAATTAGAAAGAGTAAACTGTATTTGTCTAAAATTTATTT
TTAAAAAGATGTCTTAAAATTTTGTCTCATGGGTGGCCCTAAGAATACTG
AGAATAAACACAAAAAGGCTCTTTGATGTTGATGTGACTTTACCATTTTT
GGGAAGATGAGGAATAGCTCATACGAGGAAATATTTTCTGGTATGATATC
ATTTTGTAACAGTTTAAGATTGAATTAGAAAGAAGTATAATATAATTTTC
TATAATTATCTGTTTTCTAAAACATCAATCTCGTTTAACATCATAGTATT
ATTTCGCTAATACTGTTTGGGAATGTTATTGCCATTGCAAGAAAATGGAA
GAACGAAGAAACGTCCGCACTGACAACCAAGCTGCCATTTTGTTGTACCA
AGGAGATATGGAAACCATGGTAACTCTTCTCTTTTGTTGTTAATGTTAAC
GTCTCTGATGTCATTTAACACAACAAAATACCGTATTTGTTTGCTTAGAC
CTACACGCCACTAAAATTCATGATTATGTGACCCTATAATTATTATCTTG
GTTTTAAGTGGGTATGTTTGGTTAGGTGGATAATTAGTCAAAAGCTTTTG
AAAACTATTTTTACGAATTCGGCTCTTCCAGAAAAAATTCGTTCATGGGG
GTGGAGGATATTATTTTTTCAATGATCTACCCCTGGGCATTTAAATTTTT
CACCCCCCGGACACGCGTTTTATCCCTGGACAAGCATCAAATCGGCCCCC
TGGACAGTATGTCTTCTACCCCCTACGAGGGTTTTTTTTCTGGAAGAACC
CATTTCAAATAATGGTAGGGAAAGTTAACAAAATGAGGGGTGTTCGAATT
GATCAGTCTAATTTTTCATACACTGACAACTTTTTAGTGGGTGGGCGGCT
CTAACGAGACCAATGTCAACAACAAAATACAGTGTAATGGTTTTTCTATG
TTTGGCATACGAATACGAAACTCAATATTCAAACATTTTATTTTCGTCTA
TTTTCTCTGTGGTCAAAATACTCTTGTTACAATTTTCTTCGTTAGTCTTT
TTCTTGTGATCACATTTCATCTTACGATGTGTGGAGGTCGTCTTTTGTCA
ACAAACTATCATCTCATATCCACGTGGTCTAATTTCCATAATGGCGGATA
ATACAATTTTCGTAGCTCTCTTGACTGAATAGATGAAATTATACAATATA
AGAAAAAAAGTCCTCAAATTTAGCATGCCTTAAAATTCTGTTCGTAATAT
ACGTGCACCATTTTGAAAATAAATCCAAGCTTACTGTACACTCTGAAGAT
TGTCGGAGTCAAAATAAAACTATAATTTAAGTTAAAAGAGAATTTCCGAT
TCTAACACTTATTAGTACTTCCATTTCCGCAGGTTTACCAACCATAACTT
ACGTTTAGACAGATACTTCAATGGGGAAAACTTAACCGGGGAAAAGTGAC
GAGTTTTTTAGGCAAGTCCCCCCTCCCCACGAAAGTATTTTTGCTCAACT
TCCAGGGGGTTGGTATACAGATTTCCAAAAAGTTGACCAAGTTTCCCCCC
GGTAGAATAAAGATATACTATAGTTTTGTTAATGTCATTAATATTGATTA
ATCATTTTGTTCTTCTCAGAATTTGTTNAACGAAAATTTTGCCTGACTAA
ATTTTTTACCTTCAAATTTGAAAAAAAACGGTAGAATAAAAATATACTAT
AGTTTTGTTAATGTCATTAATATCGATAAATCATTTTGTTCTTCTCAGAA
TTTGTTGCCAACATACGATGACGTTGTCAAGACCAGCCCTCCACCTGCTT
ACATCCAATAAACGTACAAAGTATGTCCATTCGAAATGACGGTGTGTGTC
AACTCGCACGAGGTGTGTGGGCGCAGTTTTTCACCCTCATTCATTCATAA
TTTACTCGCAAATTTACTCAGTTTTTCTAAAAAAATAAAAACTTTATTAT
CATGGTAATCTTTTATAGTTTTGAAGGCTGTAAGGTACTTCTTGGGAATT
GTATTGAAAATACTTTTAGTTCTGTTTTAAATTAAGTTTATTAGCTAAGT
ATTGAGAGGGAATCAATTGTGTGCTTTCTTTTATTTGAAGATACTATTTA
TAACAATGAAACTTCGATTTGGGACTTGCTTTTTTTTATAGATTTTAAAG
ATTCTGACAGGTAGCTTAAGAATTTGATTTCTTAAAAACTTTGCTGGCAT
GTACAATTTATAAAATTTTATCTTTAACAATTTGTCTTATTCCATTTGAC
CTAAACTTTTTTCATACGCGGGGTACAGATGAGATTTGAATATCTTTTCG
TCAAAAAAGAAATTCAGCTGCTTTCTGCATCCTTCTCATTTTTTTCCATT
GTACTTTTTTCAGTTTTTGTATCAAAATTTCTTATTTTTCTCGGAAAAAG
TATGTGCTGGTAATTCTTCCTTCTCTATTTTTTTTAAACTTTCTTTAAAT
AGTTGTGAATAAAAAAAACTCTCTCCTCTTCAGGAGATTTCACCTGCCCA
AATTTCGTAAAAATACCTCCGGCAAAATCTATTACTCTAGCTGTATTTTT
CAAGATATATTCTTTTGATGAAAAATAGCTTCAATTAGTAGGGGGCAAGC
CTTGGGTTCCGTGACATCTTTTCTACGACCTAGCCATTTTTAGTCTATTC
C

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010244	XLOC_010244	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000291	supercontig	sc0000291:358651..364301 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.997	52.8338	63.434	54.2206	7.44491	7.57588	25.9567	21.9707	44.7828	42.1702	42.3657	36.9942	44.3873	43.5529	49.6327	51.7868	37.5057	44.7462	54.7756	61.6086	52.6052	51.0823	35.3665	41.3548	17.5832	15.7577	50.1676	49.6068	56.9461	55.1598

Blast

[Close]

BLAST of TCONS_00018227 vs. Swiss-Prot (Human)
Match: LAP4B (Lysosomal-associated transmembrane protein 4B OS=Homo sapiens GN=LAPTM4B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.823e-20
Identity = 71/237 (29.96%), Postives = 114/237 (48.10%), Query Frame = 2

Query:  155 KSCCLCLNVRIGTIMIGLFNLVCHAF-WIVSLSSYIKKHQ----STELSKHLKEWKVINHFSDFAXXXXXXXXXXMIAMVVACLSFLIVVMLVYGATLRLSGYILPFFCLQVFDLCLSVLVFATVTSYAPQLKYYLEVSAHDEVHRQYLQNMSLTHFRMVLFSFWIVVLAVKYYFANTVWECYCHCKKMEERRNVRTDNQAAILLYQGDMETMNLLPTYDDV----VKTSPPPAYIQ 838
             SCCLC +VR GTI++G++ L+ +A   ++ LS+     Q    S+EL    +       F D A           IA+ ++ L  LI  M  YGA  + + +I+PFFC Q+FD  L++LV  TV  Y   ++ Y+     +  +R  + +++ T   +++  F  ++L  K Y  + VW CY         R +   N + +L+Y    +T  LLP YDD         PPP Y+ 
Sbjct:  157 NSCCLCCHVRTGTILLGVWYLIINAVVLLILLSALADPDQYNFSSSELGGDFE-------FMDDANM--------CIAIAISLLMILICAMATYGAYKQRAAWIIPFFCYQIFDFALNMLVAITVLIYPNSIQEYIRQLPPNFPYRDDVMSVNPTCLVLIILLFISIILTFKGYLISCVWNCY---------RYINGRNSSDVLVYVTSNDTTVLLPPYDDATVNGAAKEPPPPYVS 369

The following BLAST results are available for this feature:

BLAST of TCONS_00018227 vs. Swiss-Prot (Human)

BLAST of TCONS_00018227 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LAP4B	3.823e-20	29.96	Lysosomal-associated transmembrane protein 4B OS=H...	[more]

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TCONS_00018227 (transcript) - C. hemisphaerica