TCONS_00018205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018205
Unique NameTCONS_00018205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018205 ID=TCONS_00018205|Name=TCONS_00018205|organism=Clytia hemisphaerica|type=transcript|length=2212bp
CGATTCGGTTTTTTAGATATCTGGctaaatctaaaaaaatcacaatctcA
ATCTTATTTCTATCACATGTCGAATCATCTTTGGCAAGGGCTAATGGCAA
GTTTGAAAGAATTTGACAGAGAACTGGAACTTGTTAAATCTAGAATATGT
AAATTGAACTTTTGGGCATAGAGTTTAGAGAACATGGGGAGTAAAACTCA
GCAGTCCATCCAGGTCTAAAAGAAGTTTTCGTTCCTCAATTTAGTCCTTT
TGGATCATTGATGGATGGCGAGATACGAATCTGTTCATTTTTCAAGCTTT
GATGAGTGACCGAATCAACACTCATGTTGATTTTATTGTAGGCTGAGTGA
GTGAGTGGAGAGATTTTAATGTTATTGTATACTTTACTGACTTCAATAAA
ATGGATTAATTTTATGTGGTCATCGTTCGCCATATTGACAAGATTATAAA
CGTTTAAAATGACgatttgaaagtttaaaagaaACGTGTCTCATAACGTC
TGTGTTTGGTGAACgatttttgaaagttgaaatgttAACTTAGCCTCTGA
TTTCGTCTTACTAATTATCCATATTTTTTGgtattagataaaaaaaatca
ttaacaaAGATAAGTCAAATCAACCGAAAGCAGAAAAGATGAGTTGGATT
TGTGTATTGGCATGTTTAACTATGGTACCTGGATGGTCCAGCACCATGTC
AGTGTCCAATAAAGAGCTGACAGAATTGGAAACCTTGATCAAAGCCTATA
AAGACATAAGTGGCAACATACAACATCGTGCCGTCAGTAATCCAGAACCC
GTGATACCAAAATCAACAAACGGCAACTCGCAACTACATGAACAACAAGT
CGAAGCTTCCAAAGTTGGATTAAAGATCATGGCGGCATCACACGCAAAGG
CTTGTGGGACTGCAAGCCGTATAGCATTTAATGAATGCAACGAGAAGGCC
AACACGAAGAACGAGGAGCAACATTGTGCTGAAACCTACGTTGATAAATA
TTCGCATTGTTATTTTGGTGAAACACTAACCACTGGTAGCTCAGACTTGA
TGCATTGTTCAGGCTCCTGTATGTGGAATTTCGATAACTGTCTGGTCAAT
TCAGATAAAGTTGAGATGTTCATCTGTATGAATGGCCGCGATATTTGCTC
CAATAATTGTCCCTGGTCAAACGCTATTTCAAGCAACTCTAAAAGATCAG
GTACTAACTGTAACAGTGTATGTGAAGGCAAGTTTGACATGTGCTTTAAT
TCAGCTCAAAAAGGTTCTCATATTTTCCTTTGTAATGTAAGCAGAGCTCT
CTGTCGGAAACAAACGACCTGTGTGATTGATAaataaagaaacaacaaaa
gaGAAGGTTTAAAGCTCATCATCAGTCTCCCAAAGAATTCCAGATATTGA
AGATTTGTTTCCAGATCCTTCATAAAACTAAAGCAATCGATCAAATTAAA
TGGTAAAATTTAATAAACCTTCGAACTTTATCATCTTGATGTTTGTCCCT
GAACTGGTTTGGTTGAATGTCGATATAGAACGATATCAGAATCATGGTGA
AAGCTTAAGTGAAGACTTTGACAAGAACATGTTGTGAACCCCCCCCCCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttttgcccccccccccccccttgtacA
TATTATTTCGGTGTTTTTATatttggtttttctttttgtcCATTCCTTTT
TACAATCCATTGCCCCGAATCAATTTTGAGATCATTTTTCTTCAGTTTCT
CGATGAAGATTACAGAAGTCAGTCAAAAGATTTTCATCTATGAGATTTTA
TTCAGTTTCCATGAGTTTATGCTGCTCCACTTAATTTTATCcctaaatat
ttttacttttttttaattttatgctcATATTATATAGGAGAAAAAGagtt
taattattttttatttatattttttagaatGTAAGATTGTTACCATTTAA
ATATTATAACAATTAACTAATGTGCCATGAAAACTATTCAGTGATCAGCA
TACAATGTTCTTGTTTCACTCTGGAGAAAGATCCAAAAAAATTCGTTATG
CCTTAAATTTTTTAACACATGAAGCTTAAGAAATCAATTGAATCGTGTTA
AAAATgttggaaatattaaactgGGTCAGAAAGGTTTTAAGCGGATAGTT
CGCCGTTTAAGT
Run BLAST on NCBI

protein sequence of TCONS_00018205-protein

>TCONS_00018205-protein ID=TCONS_00018205-protein|Name=TCONS_00018205-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MSWICVLACLTMVPGWSSTMSVSNKELTELETLIKAYKDISGNIQHRAVS
NPEPVIPKSTNGNSQLHEQQVEASKVGLKIMAASHAKACGTASRIAFNEC
NEKANTKNEEQHCAETYVDKYSHCYFGETLTTGSSDLMHCSGSCMWNFDN
CLVNSDKVEMFICMNGRDICSNNCPWSNAISSNSKRSGTNCNSVCEGKFD
MCFNSAQKGSHIFLCNVSRALCRKQTTCVIDK
Run BLAST on NCBI

transcript from alignment at sc0000291:17838..20906-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018205 ID=TCONS_00018205|Name=TCONS_00018205|organism=Clytia hemisphaerica|type=transcript|length=3069bp|location=Sequence derived from alignment at sc0000291:17838..20906- (Clytia hemisphaerica)
CGATTCGGTTTTTTAGATATCTGGCTAAATCTAAAAAAATCACAATCTCA
ATCTTATTTCTATCACATGTCGAATCATCTTTGGCAAGGGCTAATGGCAA
GTTTGAAAGAATTTGACAGAGAACTGGAACTTGTTAAATCTAGAATATGT
AAATTGAACTTTTGGGCATAGAGTTTAGAGAACATGGGGAGTAAAACTCA
GCAGTCCATCCAGGTCTAAAAGAAGTTTTCGTTCCTCAATTTAGTCCTTT
TGGATCATTGATGGATGGCGAGATACGAATCTGTTCATTTTTCAAGCTTT
GATGAGTGACCGAATCAACACTCATGTTGATTTTATTGTAGGCTGAGTGA
GTGAGTGGAGAGATTTTAATGTTATTGTATACTTTACTGACTTCAATAAA
ATGGATTAATTTTATGTGGTCATCGTTCGCCATATTGACAAGATTATAAA
CGTTTAAAATGACGATTTGAAAGTTTAAAAGAAACGTGTCTCATAACGTC
TGTGTTTGGTGAACGATTTTTGAAAGTTGAAATGTTAACTTAGCCTCTGA
TTTCGTCTTACTAATTATCCATATTTTTTGGTATTAGATAAAAAAAATCA
TTAACAAAGATAAGTCAAATCAACCGAAAGCAGAAAAGATGAGTTGGATT
TGTGGTGAGTTTTTCAGGATGTTTCTTACTCTATTTATTCTAAATTTAGA
CTCTACCAATGTAAAATTTGTGATAAACGGCTCCAAGAAAATTTTTCCCA
TTAGCCCATTTTTATCCTATAGAAATAAGTACAATTCCAAAAAGGGATAT
CATATACAAAGGATTGAAAGCTTATCCTGTCAAATTAGAATTTTTATACT
GTTATTCATTTCTCCATTCACACTGTACAGACTATATTCACTACTTCGAT
AATGTGTTCTGGGATAGTTCACTGTATACAAATCGGAAATTATCTGGGAA
AAATCCCAGGTGACTGGCATAGTGATATAAATGTCTAATATCAGTGATAA
TAATTCCGGAAAATTGCGGGCTGAAAACATTGTATTGTCACTTTTCATTG
AAAGTATGTTATAGAAAATGAAATGTGCTTTCCTGGGATATTATGACGTA
TAATAGACGCAAACCCCTATCATGTATATTATCCTTTTTAAGGTCTGCCC
CCTTCAAAAGAAGGGGAGCGAAATTCAACGACCTCAAAAATCCTCCCGAT
TGATAAATTATGCAACACTTCCCAAAATATTTTCTAAAGGATCAGCATAA
AATATTTCCTCTGTCGTTTCACTTTGTTAAAAGTCTTCTTTTTTACTCCC
TTTTTTGATCTTCACATTCTTTGTAAAATTTCATTCATAAATTTTTATAA
CATGATGTCATCCCTCTCAATTATGGACCAAGAATTTCTATATAAAGATT
CTTGGGGGAAAGCATATTTCAAAACATCGAACCAACAGTCACAGATCAGT
CAACTTGACAAAATTTTCAATCAACTTTGAATAACTATGAATACTTCTTT
GGTCATTTCAGTATTGGCATGTTTAACTATGGTACCTGGATGGTCCAGCA
CCATGTCAGTGTCCAATAAAGAGCTGACAGAATTGGAAACCTTGATCAAA
GCCTATAAAGACATAAGTGGCAACATACAACATCGTGCCGTCAGTAATCC
AGAACCCGTGATACCAAAATCAACAAACGGCAACTCGCAACTACATGAAC
AACAAGTCGAAGCTTCCAAAGTTGGATTAAAGATCATGGCGGCATCACAC
GCAAAGGCTTGTGGGACTGCAAGCCGTATAGCATTTAATGAATGCAACGA
GAAGGCCAACACGAAGAACGAGGAGCAACATTGTGCTGAAACCTACGTTG
ATAAATATTCGCATTGTTATTTTGGTGAAACACTAACCACTGGTAGCTCA
GACTTGATGCATTGTTCAGGCTCCTGTATGTGGAATTTCGATAACTGTCT
GGTCAATTCAGATAAAGTTGAGATGTTCATCTGTATGAATGGCCGCGATA
TTTGCTCCAATAATTGTCCCTGGTCAAACGCTATTTCAAGCAACTCTAAA
AGATCAGGTACTAACTGTAACAGTGTATGTGAAGGCAAGTTTGACATGTG
CTTTAATTCAGCTCAAAAAGGTTCTCATATTTTCCTTTGTAATGTAAGCA
GAGCTCTCTGTCGGAAACAAACGACCTGTGTGATTGATAAATAAAGAAAC
AACAAAAGAGAAGGTTTAAAGCTCATCATCAGTCTCCCAAAGAATTCCAG
ATATTGAAGATTTGTTTCCAGATCCTTCATAAAACTAAAGCAATCGATCA
AATTAAATGGTAAAATTTAATAAACCTTCGAACTTTATCATCTTGATGTT
TGTCCCTGAACTGGTTTGGTTGAATGTCGATATAGAACGATATCAGAATC
ATGGTGAAAGCTTAAGTGAAGACTTTGACAAGAACATGTTGTGAACCCCC
CCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGCCCCCCCCCCCCCCC
TTGTACATATTATTTCGGTGTTTTTATATTTGGTTTTTCTTTTTGTCCAT
TCCTTTTTACAATCCATTGCCCCGAATCAATTTTGAGATCATTTTTCTTC
AGTTTCTCGATGAAGATTACAGAAGTCAGTCAAAAGATTTTCATCTATGA
GATTTTATTCAGTTTCCATGAGTTTATGCTGCTCCACTTAATTTTATCCC
TAAATATTTTTACTTTTTTTTAATTTTATGCTCATATTATATAGGAGAAA
AAGAGTTTAATTATTTTTTATTTATATTTTTTAGAATGTAAGATTGTTAC
CATTTAAATATTATAACAATTAACTAATGTGCCATGAAAACTATTCAGTG
ATCAGCATACAATGTTCTTGTTTCACTCTGGAGAAAGATCCAAAAAAATT
CGTTATGCCTTAAATTTTTTAACACATGAAGCTTAAGAAATCAATTGAAT
CGTGTTAAAAATGTTGGAAATATTAAACTGGGTCAGAAAGGTTTTAAGCG
GATAGTTCGCCGTTTAAGT

Coding sequence (CDS) from alignment at sc0000291:17838..20906-

>TCONS_00018205 ID=TCONS_00018205|Name=TCONS_00018205|organism=Clytia hemisphaerica|type=CDS|length=1398bp|location=Sequence derived from alignment at sc0000291:17838..20906- (Clytia hemisphaerica)
TATTGGCATGTTTAACTATGGTACCTGGATGGTCCAGCACCATGTCAGTG
TCCAATAAAGAGCTGACAGAATTGGAAACCTTGATCAAAGCCTATAAAGA
CATAAGTGGCAACATACAACATCGTGCCGTCAGTAATCCAGAACCCGTGA
TACCAAAATCAACAAACGGCAACTCGCAACTACATGAACAACAAGTCGAA
GCTTCCAAAGTTGGATTAAAGATCATGGCGGCATCACACGCAAAGGCTTG
TGGGACTGCAAGCCGTATAGCATTTAATGAATGCAACGAGAAGGCCAACA
CGAAGAACGAGGAGCAACATTGTGCTGAAACCTACGTTGATAAATATTCG
CATTGTTATTTTGGTGAAACACTAACCACTGGTAGCTCAGACTTGATGCA
TTGTTCAGGCTCCTGTATGTGGAATTTCGATAACTGTCTGGTCAATTCAG
ATAAAGTTGAGATGTTCATCTGTATGAATGGCCGCGATATTTGCTCCAAT
AATTGTCCCTGGTCAAACGCTATTTCAAGCAACTCTAAAAGATCAGGTAC
TAACTGTAACAGTGTATGTGAAGGCAAGTTTGACATGTGCTTTAATTCAG
CTCAAAAAGGTTCTCATATTTTCCTTTGTAATGTAAGCAGAGCTCTCTGT
CGGAAACAAACGACCTGTGTGATTGATAAATAAATGAGTTGGATTTGTGT
ATTGGCATGTTTAACTATGGTACCTGGATGGTCCAGCACCATGTCAGTGT
CCAATAAAGAGCTGACAGAATTGGAAACCTTGATCAAAGCCTATAAAGAC
ATAAGTGGCAACATACAACATCGTGCCGTCAGTAATCCAGAACCCGTGAT
ACCAAAATCAACAAACGGCAACTCGCAACTACATGAACAACAAGTCGAAG
CTTCCAAAGTTGGATTAAAGATCATGGCGGCATCACACGCAAAGGCTTGT
GGGACTGCAAGCCGTATAGCATTTAATGAATGCAACGAGAAGGCCAACAC
GAAGAACGAGGAGCAACATTGTGCTGAAACCTACGTTGATAAATATTCGC
ATTGTTATTTTGGTGAAACACTAACCACTGGTAGCTCAGACTTGATGCAT
TGTTCAGGCTCCTGTATGTGGAATTTCGATAACTGTCTGGTCAATTCAGA
TAAAGTTGAGATGTTCATCTGTATGAATGGCCGCGATATTTGCTCCAATA
ATTGTCCCTGGTCAAACGCTATTTCAAGCAACTCTAAAAGATCAGGTACT
AACTGTAACAGTGTATGTGAAGGCAAGTTTGACATGTGCTTTAATTCAGC
TCAAAAAGGTTCTCATATTTTCCTTTGTAATGTAAGCAGAGCTCTCTGTC
GGAAACAAACGACCTGTGTGATTGATAAATAAATGAGTTGGATTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010233XLOC_010233Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018205-proteinTCONS_00018205-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018205-exon-sc0000291-1575043694:20253..20906TCONS_00018205-exon-sc0000291-1575043694:20253..20906Clytia hemisphaericaexon
TCONS_00018205-exon-sc0000291-1575043694:17838..19395TCONS_00018205-exon-sc0000291-1575043694:17838..19395Clytia hemisphaericaexon
TCONS_00018205-exon-sc0000291-1510915933:20253..20906TCONS_00018205-exon-sc0000291-1510915933:20253..20906Clytia hemisphaericaexon
TCONS_00018205-exon-sc0000291-1510915933:17838..19395TCONS_00018205-exon-sc0000291-1510915933:17838..19395Clytia hemisphaericaexon
TCONS_00018205-exon-sc0000291-1491911889:20253..20906TCONS_00018205-exon-sc0000291-1491911889:20253..20906Clytia hemisphaericaexon
TCONS_00018205-exon-sc0000291-1491911889:17838..19395TCONS_00018205-exon-sc0000291-1491911889:17838..19395Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000291supercontigsc0000291:17838..20906 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.82586	3.59264	1.78488	1.43229	39.6269	32.3707	64.6951	73.6566	33.6279	62.2492	15.4147	34.9288	19.4604	13.2	12.572	8.22455	13.9348	20.3202	17.5482	26.0667	13.3577	14.0583	11.2103	11.5581	11.9997	10.981	27.8816	29.7819	67.1561	77.555
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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