TCONS_00018168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018168
Unique NameTCONS_00018168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018168 ID=TCONS_00018168|Name=TCONS_00018168|organism=Clytia hemisphaerica|type=transcript|length=602bp
CAACATGTTTTGTTATGACAGGAATGAGGATTGAGAGATAGTGGTTAAGA
CATATTGAATAACCAAGACAGATGTGTCCATCCTATGGAATTCCGGCTGA
ATTGAGGACAAATTAACGGTCTTTTCATGCTAATCACAAAGACCCAACAA
AATGGTATGTAGGCATTTTTAATGTTTCATTAGTTTCACATCCTCTTTGA
AGGTCATGCCAAGTTTTACATGTCTTATTTTTGAACAGCTTTCGATTTCA
AGGCTAGCTAGCTTCTCACTCTTGATTGAGTTATGTTTTAGTTTTAGAGg
caagtttcttctttttctctcttctgtCGATCAGGAAGGGACTTATATCC
ATTCTCGACACCTTGAGAACTAATTCTCAATTTCacttgagctagaatct
gacaatttGCGACTTTCTATGTGTTACAAAAAATTTGATACAgcctgaag
acttcaaaaatggtcgaattTCTGGGAACTAATCTTTCGGTTTATGCTAC
CATTGGTATGGGCCTACAGCtgtaaataatttgaagattctgaagttgaa
cccagtgcgttgcgcaccgGCTAAATTGATTATTTGTTGCTGAGGAAAAT
GT
Run BLAST on NCBI

transcript from alignment at sc0000290:42621..43222

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018168 ID=TCONS_00018168|Name=TCONS_00018168|organism=Clytia hemisphaerica|type=transcript|length=602bp|location=Sequence derived from alignment at sc0000290:42621..43222 (Clytia hemisphaerica)
ACATTTTCCTCAGCAACAAATAATCAATTTAGCcggtgcgcaacgcactg
ggttcaacttcagaatcttcaaattatttacaGCTGTAGGCCCATACCAA
TGGTAGCATAAACCGAAAGATTAGTTCCCAGAaattcgaccatttttgaa
gtcttcaggcTGTATCAAATTTTTTGTAACACATAGAAAGTCGCaaattg
tcagattctagctcaagtGAAATTGAGAATTAGTTCTCAAGGTGTCGAGA
ATGGATATAAGTCCCTTCCTGATCGacagaagagagaaaaagaagaaact
tgcCTCTAAAACTAAAACATAACTCAATCAAGAGTGAGAAGCTAGCTAGC
CTTGAAATCGAAAGCTGTTCAAAAATAAGACATGTAAAACTTGGCATGAC
CTTCAAAGAGGATGTGAAACTAATGAAACATTAAAAATGCCTACATACCA
TTTTGTTGGGTCTTTGTGATTAGCATGAAAAGACCGTTAATTTGTCCTCA
ATTCAGCCGGAATTCCATAGGATGGACACATCTGTCTTGGTTATTCAATA
TGTCTTAACCACTATCTCTCAATCCTCATTCCTGTCATAACAAAACATGT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010198XLOC_010198Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018168-exon-sc0000290-1491911889:42621..43222TCONS_00018168-exon-sc0000290-1491911889:42621..43222Clytia hemisphaericaexon
TCONS_00018168-exon-sc0000290-1510915933:42621..43222TCONS_00018168-exon-sc0000290-1510915933:42621..43222Clytia hemisphaericaexon
TCONS_00018168-exon-sc0000290-1575043694:42621..43222TCONS_00018168-exon-sc0000290-1575043694:42621..43222Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:42621..43222 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82396	1.43273	2.58344	3.32543	0	0.0962004	0	0.434622	0.228217	0.565367	0.365839	0.180366	0.120077	0.0623506	0.0512606	0.111091	0	0.138921	0	0	0	0	2.00388	1.15636	0	0.173004	0	0.132105	0.707844	1.06545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top