TCONS_00018164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018164
Unique NameTCONS_00018164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018164 ID=TCONS_00018164|Name=TCONS_00018164|organism=Clytia hemisphaerica|type=transcript|length=338bp
GGATCACTGAGGCAGGGGTGCGAGTGAAGTACTTATTTATCTCTAAATGA
TTAATCTACTTACAATACTACAGATCATCTGAGTTTAAAGAAATAGTGTA
TTAACTTCATtatcaaataaagaaaattacGTCAATCTTATTCCATAGCA
AGATTTTCAAATCCTTTCTCGTCGACAGCTCCAacatttaatgttttctt
tgaCATTGCTTTACGCGACGGCCAAAACTTATTCTTAAGGTGCACTATAC
CACTGAGGAGTACGACGACAGCCAATACAACGAGAATAGACATACCCTCT
GGTTTTGCTAAGAATCCATTTTGTTGGTTTGATTGTCC
Run BLAST on NCBI

transcript from alignment at sc0000290:28466..28803

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018164 ID=TCONS_00018164|Name=TCONS_00018164|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000290:28466..28803 (Clytia hemisphaerica)
GGACAATCAAACCAACAAAATGGATTCTTAGCAAAACCAGAGGGTATGTC
TATTCTCGTTGTATTGGCTGTCGTCGTACTCCTCAGTGGTATAGTGCACC
TTAAGAATAAGTTTTGGCCGTCGCGTAAAGCAATGtcaaagaaaacatta
aatgtTGGAGCTGTCGACGAGAAAGGATTTGAAAATCTTGCTATGGAATA
AGATTGACgtaattttctttatttgataATGAAGTTAATACACTATTTCT
TTAAACTCAGATGATCTGTAGTATTGTAAGTAGATTAATCATTTAGAGAT
AAATAAGTACTTCACTCGCACCCCTGCCTCAGTGATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010194XLOC_010194Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018164-exon-sc0000290-1491911889:28466..28803TCONS_00018164-exon-sc0000290-1491911889:28466..28803Clytia hemisphaericaexon
TCONS_00018164-exon-sc0000290-1510915933:28466..28803TCONS_00018164-exon-sc0000290-1510915933:28466..28803Clytia hemisphaericaexon
TCONS_00018164-exon-sc0000290-1575043694:28466..28803TCONS_00018164-exon-sc0000290-1575043694:28466..28803Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000290supercontigsc0000290:28466..28803 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.1268	2.20198	0	1.63568	0.411433	0	0	0.373452	2.00662	0.558222	2.7381	2.53305	0.339601	0	0.671359	0	0.391019	0	0.691879	0.205216	0	0	16.3537	7.97382	0	0	10.0702	6.51105	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top