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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018159 ID=TCONS_00018159|Name=TCONS_00018159|organism=Clytia hemisphaerica|type=transcript|length=2498bp
ATTTTGCAAAACCTTCAAAAACAGATTTAATTCTAGCATagttaaaaaag
aaaggatccaaaagcaaaaaatgtcttACAAAGTTATTAAAATGTGTACC
ATCAGAGGTCAGTAATGGCCAAAAATATGCAGATTTCCACATTGGAACGA
ATAACACTCCTTTTGCTTTGCACAATTTTAAATGACTGATAGTTTTTCCG
ATGAGATAAATAGGAGGACAGAGCCAATTAAAGTCGTTTCCCCAGTGGCT
TACGAAAGCGTTAACTTCTTCAGTGTCTGGACAAAAGCTCTTTGAattaa
atctttttgtttttgtgttctTATTGTCAGCAAATCTATCTATTGTGAAT
GTACCGTAGTTGCTTTGGATATAATTAAATGTCTCATTATCTATACACCA
ATTATCTGTATCGAtgctttttgaaattgtatcaGCGATTTCGTTTTGGT
CTCTAGGGATCCAAAGAGGATAAAGTCGAATACTGTTCTTAACGCATAAA
CCATAAATGTCAATTGCTAGCCTTTGTAAATGATCTTTTGTACTTCCAGA
ATTGATTATTCTGGTAACGTTTTGATTGTCAGAATTCCACTGAACCATat
cttttcttaactttttttgcaaaCGATGTCAAAACGTTTTTAACAGCAAG
AAGCTCTCTGTAAGTTGAACTCGTATTTGATTCGGATATAGAAAAATTCC
ATGAGCGATTATGTTACCTAATCTTTCAACGATGAAGCCACCGTATGCGT
ATTCACTAGCATCACTATAACATACTTTCGTAATCACGGGAGAAGTGTTG
AATTCCACGCCATTTGACGCAGATAGATTTGATTTCCAAAAAGCTCTAAT
GAAGATTTCTTAACGTTTATTGTCAGACCAGCCGACTTAAGGTCATGTGC
CATTATGTCCCGATGTTTTACGATCATTGACTCTGGGTAACCACAAGCAA
CTCCGTCGTCGAGATACATAACCGACTTCATACCTTGGCCTCTCCATTTT
TTAACCAACTGGCGCATTAATTTCGTAAAAACCCAACAGGCTGAACACAA
ACCGAAAGGAAGGACCACGAAAACGAAATATTTTGTAATGCccttgaatt
cccaagaaaaACCAAGATATCTATGAAAATCTTCATTAATTGGCACGTGA
TGATAGCCgctttttaaatcaaaagtaAACATTAAATCCCCAGGATTAAC
TAGATCTGACAAAGTTTTTATGTTATCATATTTGAATTTTGTAATGTCAA
TATATTTGTTAACGTTTCGAAGATCTAGAACAAGtctcaattttgaattt
ctttctgCTACTGAAAGGGGGTTGACGCAATAAGGAATGAAATCGACTTC
ACGAATGCATTTGTTTTTGACAAGCTCCTCGAtcgaatttttgacaaatt
tgtgCTCTCTCAGACTCGATTtattatttttggaataagatgggggAGGG
TTCTTTTTGAATGGCAAACTGTACCCGTTTTTGACGATATCTAAGATGAA
GGACGGTGCTTTTAACTcgaattcccaaaattttgcgTGTTCTCGAATCT
TTCCGGCAACTGAGACCTGTTCCGTTTCCTCATGCTCCCAATATCTCTCT
GAATCAAatggaagaaagaaaaaatggaGGTAGTTGAAATCATAGAATAG
CAAAtggttatcttcaaaaataacaCGACGTACATGACACAGTGGTCGCT
CTAACAAAGTATTATAAAATAAcacaaatattcaaaatgataaACTCGTT
AAATCGTTTACGACTCGTTATACTGTTAATTTTCCTCCTCTTTACTCTCT
TCTGCTCTTGGAATTTTTACGTTGTCCCTTGAGGATGGATATGGACAATT
ATAAGAATAATGTCCATAATATCTACAGTTATAGCATTGAATAGACTCAA
TCTTTCTTCTGTGAAAAACATTGTTAGATTGATTTGAATAACTCGAACAC
TCGCCTCTGTTTTGATTATTAGATGATGAAGCAATAGATTTTGTTTTCTT
AGCGTCTCTCGAAGTCGAGTTAGCTTTGATAGCTTTCTTTAACCGTTTCT
CTTCCTCGTCCCCTGATACTAGGTCATCAGACACGAAGTGTCTGACGCAT
CCCCAACCTTCTCTATCCgcaattttaattaatttcattCTGAATGCAAT
AGCTTCCTTACCAGACTTCAAGGCCTTCTTTGCATCCTCTAATTTGTTTT
CGTTCAATGATTCTTCGATATCGTCCATGCTTTCCATCACTCGCTTCTCA
TGGTTGTACTGGTCTTCGTTTCCAATGTTTTTAAACTGCACATCATccat
ttttctctttctctcaAGCCTATTGTTAAATTTTGCTATTGATGACTTTT
GATACTCTTTAAAACCATTTAATGTGTCTTGAGTTTGTTGCCTAAAGTCC
ACTAACTGAGTGATTGCTGTCTGTAGCTGAGCAGCAAGATTTTGATTCTG
TTCTGCAGCACTTCCTTCTGACGCCATCTTAAGTACACGACCTTTGCG Run BLAST on NCBI transcript from alignment at sc0000290:359252..362050- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018159 ID=TCONS_00018159|Name=TCONS_00018159|organism=Clytia hemisphaerica|type=transcript|length=2799bp|location=Sequence derived from alignment at sc0000290:359252..362050- (Clytia hemisphaerica)
ATTTTGCAAAACCTTCAAAAACAGATTTAATTCTAGCATAGTTAAAAAAG
AAAGGATCCAAAAGCAAAAAATGTCTTACAAAGTTATTAAAATGTGTACC
ATCAGAGGTCAGTAATGGCCAAAAATATGCAGATTTCCACATTGGAACGA
ATAACACTCCTTTTGCTTTGCACAATTTTAAATGACTGATAGTTTTTCCG
ATGAGATAAATAGGAGGACAGAGCCAATTAAAGTCGTTTCCCCAGTGGCT
TACGAAAGCGTTAACTTCTTCAGTGTCTGGACAAAAGCTCTTTGAATTAA
ATCTTTTTGTTTTTGTGTTCTTATTGTCAGCAAATCTATCTATTGTGAAT
GTACCGTAGTTGCTTTGGATATAATTAAATGTCTCATTATCTATACACCA
ATTATCTGTATCGATGCTTTTTGAAATTGTATCAGCGATTTCGTTTTGGT
CTCTAGGGATCCAAAGAGGATAAAGTCGAATACTGTTCTTAACGCATAAA
CCATAAATGTCAATTGCTAGCCTTTGTAAATGATCTTTTGTACTTCCAGA
ATTGATTATTCTGGTAACGTTTTGATTGTCAGAATTCCACTGAACCATAT
CTTTTCTTAACTTTTTTTGCAAACGATGTCAAAACGTTTTTAACAGCAAG
AAGCTCTCTGTAAGTTGAACTCGTATTTGATTCGGATATAGAAAAATTCC
ATGAGCGATTATGTTACCTAATCTTTCAACGATGAAGCCACCGTATGCGT
ATTCACTAGCATCACTATAACATACTTTCGTAATCACGGGAGAAGTGTTG
AATTCCACGCCATTTGACGCAGATAGATTTGATTTCCAAAAAGTGAGTTC
TGATTTTAATTCTTTTGAAATTAGTCGATTACTGTCCCAGGCTAAGCCGA
GCATAATCCTGTCGTCGATGAATTTATACATTTTGCGTGTGAAAAGTCTT
GTCAAGGGTCCTATTGCTATAGACATGGCGATTATACGCCCGGCTAATTT
TGCTATTTTTCTTGTAGTCACTAGATCGGATGTCAGAATTTCGGCAATAA
CACGTAGAACAGCTTCCAATTTTGGAAGGGGAACATAAATTTTCATCTCT
TCTGTGTTGATTCTAAAACCCAACCACTCTTTTTCTGTTTCAGGCTCTAA
TGAAGATTTCTTAACGTTTATTGTCAGACCAGCCGACTTAAGGTCATGTG
CCATTATGTCCCGATGTTTTACGATCATTGACTCTGGGTAACCACAAGCA
ACTCCGTCGTCGAGATACATAACCGACTTCATACCTTGGCCTCTCCATTT
TTTAACCAACTGGCGCATTAATTTCGTAAAAACCCAACAGGCTGAACACA
AACCGAAAGGAAGGACCACGAAAACGAAATATTTTGTAATGCCCTTGAAT
TCCCAAGAAAAACCAAGATATCTATGAAAATCTTCATTAATTGGCACGTG
ATGATAGCCGCTTTTTAAATCAAAAGTAAACATTAAATCCCCAGGATTAA
CTAGATCTGACAAAGTTTTTATGTTATCATATTTGAATTTTGTAATGTCA
ATATATTTGTTAACGTTTCGAAGATCTAGAACAAGTCTCAATTTTGAATT
TCTTTCTGCTACTGAAAGGGGGTTGACGCAATAAGGAATGAAATCGACTT
CACGAATGCATTTGTTTTTGACAAGCTCCTCGATCGAATTTTTGACAAAT
TTGTGCTCTCTCAGACTCGATTTATTATTTTTGGAATAAGATGGGGGAGG
GTTCTTTTTGAATGGCAAACTGTACCCGTTTTTGACGATATCTAAGATGA
AGGACGGTGCTTTTAACTCGAATTCCCAAAATTTTGCGTGTTCTCGAATC
TTTCCGGCAACTGAGACCTGTTCCGTTTCCTCATGCTCCCAATATCTCTC
TGAATCAAATGGAAGAAAGAAAAAATGGAGGTAGTTGAAATCATAGAATA
GCAAATGGTTATCTTCAAAAATAACACGACGTACATGACACAGTGGTCGC
TCTAACAAAGTATTATAAAATAACACAAATATTCAAAATGATAAACTCGT
TAAATCGTTTACGACTCGTTATACTGTTAATTTTCCTCCTCTTTACTCTC
TTCTGCTCTTGGAATTTTTACGTTGTCCCTTGAGGATGGATATGGACAAT
TATAAGAATAATGTCCATAATATCTACAGTTATAGCATTGAATAGACTCA
ATCTTTCTTCTGTGAAAAACATTGTTAGATTGATTTGAATAACTCGAACA
CTCGCCTCTGTTTTGATTATTAGATGATGAAGCAATAGATTTTGTTTTCT
TAGCGTCTCTCGAAGTCGAGTTAGCTTTGATAGCTTTCTTTAACCGTTTC
TCTTCCTCGTCCCCTGATACTAGGTCATCAGACACGAAGTGTCTGACGCA
TCCCCAACCTTCTCTATCCGCAATTTTAATTAATTTCATTCTGAATGCAA
TAGCTTCCTTACCAGACTTCAAGGCCTTCTTTGCATCCTCTAATTTGTTT
TCGTTCAATGATTCTTCGATATCGTCCATGCTTTCCATCACTCGCTTCTC
ATGGTTGTACTGGTCTTCGTTTCCAATGTTTTTAAACTGCACATCATCCA
TTTTTCTCTTTCTCTCAAGCCTATTGTTAAATTTTGCTATTGATGACTTT
TGATACTCTTTAAAACCATTTAATGTGTCTTGAGTTTGTTGCCTAAAGTC
CACTAACTGAGTGATTGCTGTCTGTAGCTGAGCAGCAAGATTTTGATTCT
GTTCTGCAGCACTTCCTTCTGACGCCATCTTAAGTACACGACCTTTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018159-exon-sc0000290-1575043694:361209..362050 | TCONS_00018159-exon-sc0000290-1575043694:361209..362050 | Clytia hemisphaerica | exon |
| TCONS_00018159-exon-sc0000290-1575043694:359252..360907 | TCONS_00018159-exon-sc0000290-1575043694:359252..360907 | Clytia hemisphaerica | exon |
| TCONS_00018159-exon-sc0000290-1510915933:361209..362050 | TCONS_00018159-exon-sc0000290-1510915933:361209..362050 | Clytia hemisphaerica | exon |
| TCONS_00018159-exon-sc0000290-1510915933:359252..360907 | TCONS_00018159-exon-sc0000290-1510915933:359252..360907 | Clytia hemisphaerica | exon |
| TCONS_00018159-exon-sc0000290-1491911889:361209..362050 | TCONS_00018159-exon-sc0000290-1491911889:361209..362050 | Clytia hemisphaerica | exon |
| TCONS_00018159-exon-sc0000290-1491911889:359252..360907 | TCONS_00018159-exon-sc0000290-1491911889:359252..360907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000290 | supercontig | sc0000290:359252..362050 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001878 | Znf_CCHC |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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