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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018123 ID=TCONS_00018123|Name=TCONS_00018123|organism=Clytia hemisphaerica|type=transcript|length=750bp
attaattttatccgGATAAATATAAAACAGTTGTAGCCAACAAACATCCA
TGTTCAAACTCTTACACACAATAAGCTTACCATGGATTTCAGATACATTT
TTAGACATACCCAGTACATAGTCCGGCagcatcttttgatttttcatgaa
aaGTTCAAGTAATGCTATAGAGTTtgatcttttttcttcattcagAAAAC
CAGTTATGCCGTCCATATTGGATCCTTTCTGTTGTGGCTTCGGAAAGATT
ATTTTGATTGAGTGTTGTGATCGTAATAGATTTAATAAGAATTCTAGTGT
TGTTGATATTAGTAATGTTTTAAAGTCTGGTCTTGAGCACTTTGTAGAGT
TGATGAATGAAGGGAATGGTTTCGATGTTAAGCGTAAGTGGTTCAACGAc
aatacaaagaaaataaaaacttgtTTGGAGACTCTTGGTAAGAGGGCGCA
TGCAACCAGGAAGCAGTTGATGGATGGATTTTCTAGCACAGCTTGGCTGA
AACTGTCTGTAGCTCAAAGAGGTCGCCATAGTTTATTTGAATGCAAAGGT
TGCTTGAACAATGAGAATTTGAGATCGATGTTGCGTCTGTTTCCCATCAA
CAAGGATGGTCCATTTCTCAAGAAAGCGGAAGATGGGGGGTTGTTTAAGC
CGTCAAAGGAGGAAATGAGAGCGTTGGCAGCAGAAAGAATCGGCGAACTT
AATGAGGAGTTTTCTGCCAATCACGGGTGTAGTTTTGAAGAGGCACTTGG Run BLAST on NCBI protein sequence of TCONS_00018123-protein >TCONS_00018123-protein ID=TCONS_00018123-protein|Name=TCONS_00018123-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MKSSSNAIEFDLFSSFRKPVMPSILDPFCCGFGKIILIECCDRNRFNKNS
SVVDISNVLKSGLEHFVELMNEGNGFDVKRKWFNDNTKKIKTCLETLGKR
AHATRKQLMDGFSSTAWLKLSVAQRGRHSLFECKGCLNNENLRSMLRLFP
INKDGPFLKKAEDGGLFKPSKEEMRALAAERIGELNEEFSANHGCSFEEA
L Run BLAST on NCBI transcript from alignment at sc0000287:346637..347386 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018123 ID=TCONS_00018123|Name=TCONS_00018123|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at sc0000287:346637..347386 (Clytia hemisphaerica)
CCAAGTGCCTCTTCAAAACTACACCCGTGATTGGCAGAAAACTCCTCATT
AAGTTCGCCGATTCTTTCTGCTGCCAACGCTCTCATTTCCTCCTTTGACG
GCTTAAACAACCCCCCATCTTCCGCTTTCTTGAGAAATGGACCATCCTTG
TTGATGGGAAACAGACGCAACATCGATCTCAAATTCTCATTGTTCAAGCA
ACCTTTGCATTCAAATAAACTATGGCGACCTCTTTGAGCTACAGACAGTT
TCAGCCAAGCTGTGCTAGAAAATCCATCCATCAACTGCTTCCTGGTTGCA
TGCGCCCTCTTACCAAGAGTCTCCAAacaagtttttattttctttgtatt
gTCGTTGAACCACTTACGCTTAACATCGAAACCATTCCCTTCATTCATCA
ACTCTACAAAGTGCTCAAGACCAGACTTTAAAACATTACTAATATCAACA
ACACTAGAATTCTTATTAAATCTATTACGATCACAACACTCAATCAAAAT
AATCTTTCCGAAGCCACAACAGAAAGGATCCAATATGGACGGCATAACTG
GTTTTctgaatgaagaaaaaagatcaAACTCTATAGCATTACTTGAACtt
ttcatgaaaaatcaaaagatgctGCCGGACTATGTACTGGGTATGTCTAA
AAATGTATCTGAAATCCATGGTAAGCTTATTGTGTGTAAGAGTTTGAACA
TGGATGTTTGTTGGCTACAACTGTTTTATATTTATCcggataaaattaat
Coding sequence (CDS) from alignment at sc0000287:346637..347386 >TCONS_00018123 ID=TCONS_00018123|Name=TCONS_00018123|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0000287:346637..347386 (Clytia hemisphaerica)
AAGTGCCTCTTCAAAACTACACCCGTGATTGGCAGAAAACTCCTCATTAA
GTTCGCCGATTCTTTCTGCTGCCAACGCTCTCATTTCCTCCTTTGACGGC
TTAAACAACCCCCCATCTTCCGCTTTCTTGAGAAATGGACCATCCTTGTT
GATGGGAAACAGACGCAACATCGATCTCAAATTCTCATTGTTCAAGCAAC
CTTTGCATTCAAATAAACTATGGCGACCTCTTTGAGCTACAGACAGTTTC
AGCCAAGCTGTGCTAGAAAATCCATCCATCAACTGCTTCCTGGTTGCATG
CGCCCTCTTACCAAGAGTCTCCAAacaagtttttattttctttgtattgT
CGTTGAACCACTTACGCTTAACATCGAAACCATTCCCTTCATTCATCAAC
TCTACAAAGTGCTCAAGACCAGACTTTAAAACATTACTAATATCAACAAC
ACTAGAATTCTTATTAAATCTATTACGATCACAACACTCAATCAAAATAA
TCTTTCCGAAGCCACAACAGAAAGGATCCAATATGGACGGCATAACTGGT
TTTctgaatgaagaaaaaagatcaAACTCTATAGCATTACTTGAACtttt
cat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018123-exon-sc0000287-1491911889:346637..347386 | TCONS_00018123-exon-sc0000287-1491911889:346637..347386 | Clytia hemisphaerica | exon |
| TCONS_00018123-exon-sc0000287-1510915933:346637..347386 | TCONS_00018123-exon-sc0000287-1510915933:346637..347386 | Clytia hemisphaerica | exon |
| TCONS_00018123-exon-sc0000287-1575043694:346637..347386 | TCONS_00018123-exon-sc0000287-1575043694:346637..347386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:346637..347386 . |
Blast
The following BLAST results are available for this feature:
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