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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018118 ID=TCONS_00018118|Name=TCONS_00018118|organism=Clytia hemisphaerica|type=transcript|length=1340bp
GATCTAGATAGCAAAATGAGATTTTTATCAGCAAATCCAAAAGCACTTta
tgtacaaaataaaaaccTGGCAAACTTTTTGTTCCCAGTATAAATATCTA
ATATGAAAATAATGTCAAAAAGGTAAAGAATAAAAATCCTGGGTAAATCT
tggttcaaaaaatatataatgagTCCAATTTAATTAATTGTTTTACGAGC
AAGGTCTGTTGAAATGGGTCAGTCGGTCAgcacaaaaatcaaattttagt
cGGTCAGGCCTGTAAAACAATTAAATTGGCCTGGCCTAATATAAAAATAA
GGTTGGAAAGTAAAGAATAATAACCTGATACTCTATGTTCCCAGTAAAAT
ACCTAatgtaaaaatgtcaaaacatgAAGAATAAAAACGTGTGTAAAGTA
AAGCATGAAAATCTGCCcagtaaaaacatgaaaaatgatGCCTGTCTGAA
AAACAAAACTcactcaaaattaaatttttgaaatctgaacttGAGAGAAA
AGCAAACGAATGAAAACAGTTGcaattcaaaatttgagagaaaATAAAGG
TATAAGAGTGAACcaaaacaaaatcgaaaaaaactaaaatatatGGTCAG
TAAACTAAAGAACTAATGATGATTAAAAATATCACTTGGATTTTGAAACA
ACAACTGTCTTACCAATTTCTTCATTGTTTAAAACtttaattgttttaat
ttcCAACTCGATATGTGTATATCAACCTTTTTACCGAGAAGAAAATCTGC
TAACACTTCCTCTTCAAAAACGGTACCAGTCCAGACTTCACTATTGAGCA
CGAGGAAAAGCGAATCAATCCCCAATACAACTGTTTTAGACACCGAATCT
GCAATCTGGATTGACTTACATGGGTTACAGCGAAATTTGTTTGATGTCAG
TGCATGTGGGACCAGTCGTTGGCATATTTTGCATTTGGAACCGCATGTAA
AGTCCTTGACCAACTGGATAACACCTTGAACAGATTCCATTTGCTTCAAC
GATGCCTTTCTTAACTTTTCATGGACAGATTTGTGTTTTTTGTCCAAATT
GATGATGGTGATAATTGTATTTGAGTTGGTTGTGAGGGTCAGAACCCCAT
TTCGCTCTTTGACACCGATGTTCTTAAGTTCAAAACAGGCTTCttcattc
tttaaaaaaatttcaatgctATTGGACCAAACTGAGATGGGCATCTGGCC
AGTAATGTCCCCAAATGTACCTTCAAGTAGTTGAAAGCCGCCTCTGGTAA
CCACTTCTCTATTGTGGCAAACAACACCCTTCGTGGTAACGTTGTTGTCC
ATCGCATCCCAAGAAGATTGAGCAATTTCCTGGACGGTCT Run BLAST on NCBI protein sequence of TCONS_00018118-protein >TCONS_00018118-protein ID=TCONS_00018118-protein|Name=TCONS_00018118-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
TVQEIAQSSWDAMDNNVTTKGVVCHNREVVTRGGFQLLEGTFGDITGQMP
ISVWSNSIEIFLKNEEACFELKNIGVKERNGVLTLTTNSNTIITIINLDK
KHKSVHEKLRKASLKQMESVQGVIQLVKDFTCGSKCKICQRLVPHALTSN
KFRCNPCKSIQIADSVSKTVVLGIDSLFLVLNSEVWTGTVFEEEVLADFL
LGKKVDIHISSWKLKQLKF Run BLAST on NCBI transcript from alignment at sc0000287:280540..281879 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018118 ID=TCONS_00018118|Name=TCONS_00018118|organism=Clytia hemisphaerica|type=transcript|length=1340bp|location=Sequence derived from alignment at sc0000287:280540..281879 (Clytia hemisphaerica)
AGACCGTCCAGGAAATTGCTCAATCTTCTTGGGATGCGATGGACAACAAC
GTTACCACGAAGGGTGTTGTTTGCCACAATAGAGAAGTGGTTACCAGAGG
CGGCTTTCAACTACTTGAAGGTACATTTGGGGACATTACTGGCCAGATGC
CCATCTCAGTTTGGTCCAATagcattgaaatttttttaaagaatgaaGAA
GCCTGTTTTGAACTTAAGAACATCGGTGTCAAAGAGCGAAATGGGGTTCT
GACCCTCACAACCAACTCAAATACAATTATCACCATCATCAATTTGGACA
AAAAACACAAATCTGTCCATGAAAAGTTAAGAAAGGCATCGTTGAAGCAA
ATGGAATCTGTTCAAGGTGTTATCCAGTTGGTCAAGGACTTTACATGCGG
TTCCAAATGCAAAATATGCCAACGACTGGTCCCACATGCACTGACATCAA
ACAAATTTCGCTGTAACCCATGTAAGTCAATCCAGATTGCAGATTCGGTG
TCTAAAACAGTTGTATTGGGGATTGATTCGCTTTTCCTCGTGCTCAATAG
TGAAGTCTGGACTGGTACCGTTTTTGAAGAGGAAGTGTTAGCAGATTTTC
TTCTCGGTAAAAAGGTTGATATACACATATCGAGTTGgaaattaaaacaa
ttaaaGTTTTAAACAATGAAGAAATTGGTAAGACAGTTGTTGTTTCAAAA
TCCAAGTGATATTTTTAATCATCATTAGTTCTTTAGTTTACTGACCatat
attttagtttttttcgattttgttttgGTTCACTCTTATACCTTTATttt
ctctcaaattttgaattgCAACTGTTTTCATTCGTTTGCTTTTCTCTCaa
gttcagatttcaaaaatttaattttgagtgAGTTTTGTTTTTCAGACAGG
CatcatttttcatgtttttactgGGCAGATTTTCATGCTTTACTTTACAC
ACGTTTTTATTCTTcatgttttgacatttttacatTAGGTATTTTACTGG
GAACATAGAGTATCAGGTTATTATTCTTTACTTTCCAACCTTATTTTTAT
ATTAGGCCAGGCCAATTTAATTGTTTTACAGGCCTGACCgactaaaattt
gatttttgtgcTGACCGACTGACCCATTTCAACAGACCTTGCTCGTAAAA
CAATTAATTAAATTGGActcattatatattttttgaaccaAGATTTACCC
AGGATTTTTATTCTTTACCTTTTTGACATTATTTTCATATTAGATATTTA
TACTGGGAACAAAAAGTTTGCCAggtttttattttgtacataAAGTGCTT
TTGGATTTGCTGATAAAAATCTCATTTTGCTATCTAGATC Coding sequence (CDS) from alignment at sc0000287:280540..281879 >TCONS_00018118 ID=TCONS_00018118|Name=TCONS_00018118|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at sc0000287:280540..281879 (Clytia hemisphaerica)
ACCGTCCAGGAAATTGCTCAATCTTCTTGGGATGCGATGGACAACAACGT
TACCACGAAGGGTGTTGTTTGCCACAATAGAGAAGTGGTTACCAGAGGCG
GCTTTCAACTACTTGAAGGTACATTTGGGGACATTACTGGCCAGATGCCC
ATCTCAGTTTGGTCCAATagcattgaaatttttttaaagaatgaaGAAGC
CTGTTTTGAACTTAAGAACATCGGTGTCAAAGAGCGAAATGGGGTTCTGA
CCCTCACAACCAACTCAAATACAATTATCACCATCATCAATTTGGACAAA
AAACACAAATCTGTCCATGAAAAGTTAAGAAAGGCATCGTTGAAGCAAAT
GGAATCTGTTCAAGGTGTTATCCAGTTGGTCAAGGACTTTACATGCGGTT
CCAAATGCAAAATATGCCAACGACTGGTCCCACATGCACTGACATCAAAC
AAATTTCGCTGTAACCCATGTAAGTCAATCCAGATTGCAGATTCGGTGTC
TAAAACAGTTGTATTGGGGATTGATTCGCTTTTCCTCGTGCTCAATAGTG
AAGTCTGGACTGGTACCGTTTTTGAAGAGGAAGTGTTAGCAGATTTTCTT
CTCGGTAAAAAGGTTGATATACACATATCGAGTTGgaaattaaaacaatt
aaaGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018118-exon-sc0000287-1491911889:280540..281879 | TCONS_00018118-exon-sc0000287-1491911889:280540..281879 | Clytia hemisphaerica | exon |
| TCONS_00018118-exon-sc0000287-1510915933:280540..281879 | TCONS_00018118-exon-sc0000287-1510915933:280540..281879 | Clytia hemisphaerica | exon |
| TCONS_00018118-exon-sc0000287-1575043694:280540..281879 | TCONS_00018118-exon-sc0000287-1575043694:280540..281879 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:280540..281879 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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