TCONS_00018115 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018115
Unique NameTCONS_00018115
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018115 ID=TCONS_00018115|Name=TCONS_00018115|organism=Clytia hemisphaerica|type=transcript|length=752bp
TTTGAAATGACAGGTCTCCCGGGAACCCTTTAAAGTCGTTTGTGGATTTT
TGGTAATAAATAAAAGCGACCAATCTTAGGGTTTTCAACCAGAAAATAAT
CCAAAGTATCTCTAGGAATGTCACCTCTTTTATCAATAGAGTCAATGCAA
GACTTGACAACCTCAATGAGCGGACTAACAGCATCCCCACTGAGCTTCTC
ATACACACTCTCATCTCCCAACTGCGACTCAGCTTCCCGAAGATAATCCT
CCCGATCCCAAACCACAATACACGAACCCTTGTCAGCCCCCTTGATGATA
ATTGAAGTGTCATTCCGTAATGAATCAATAGCTTTCCTTTCCTCCTTAGA
AATATTGTGTTCCCTTATTCTAGTGTTAAGATTAAGAATTTCTTCTTCCA
AACGACTAAGATACATCTCAATAGCTGCATCTTGGTTCCTTGGNTGAATC
AATAGCTTTCCTTTCCTCCTTAGAAATATTGTGTTCCCTTATTCTAGTGT
TAAGATTAAGAATTTCTTCTTCCAAACGACTAAGATACATCTCAATAGCT
GCATCTTGGTTCCTTGGGTTAAAATTCTTAGACCGGTTCGATTTCTTTTT
AAACTGATCCGGCACAAAATCACGTTCGTCGTTTCGAAAAAACCACTTCA
ACCGAAGCTTCCTCCCAAAGCGCTCAAGATCGTTTTTAAGAGCAGCTTTG
TCAACGAAACGTGGTGTAGGAATGAATTTTAACCCTTTTGAAAGAAGAGA
TA
Run BLAST on NCBI

protein sequence of TCONS_00018115-protein

>TCONS_00018115-protein ID=TCONS_00018115-protein|Name=TCONS_00018115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
MYLSRLEEEILNLNTRIREHNISKEERKAIDSLRNDTSIIIKGADKGSCI
VVWDREDYLREAESQLGDESVYEKLSGDAVSPLIEVVKSCIDSIDKRGDI
PRDTLDYFLVENPKIGRFYLLPKIHKRL
Run BLAST on NCBI

transcript from alignment at sc0000287:251836..252587

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018115 ID=TCONS_00018115|Name=TCONS_00018115|organism=Clytia hemisphaerica|type=transcript|length=752bp|location=Sequence derived from alignment at sc0000287:251836..252587 (Clytia hemisphaerica)
TATCTCTTCTTTCAAAAGGGTTAAAATTCATTCCTACACCACGTTTCGTT
GACAAAGCTGCTCTTAAAAACGATCTTGAGCGCTTTGGGAGGAAGCTTCG
GTTGAAGTGGTTTTTTCGAAACGACGAACGTGATTTTGTGCCGGATCAGT
TTAAAAAGAAATCGAACCGGTCTAAGAATTTTAACCCAAGGAACCAAGAT
GCAGCTATTGAGATGTATCTTAGTCGTTTGGAAGAAGAAATTCTTAATCT
TAACACTAGAATAAGGGAACACAATATTTCTAAGGAGGAAAGGAAAGCTA
TTGATTCANCCAAGGAACCAAGATGCAGCTATTGAGATGTATCTTAGTCG
TTTGGAAGAAGAAATTCTTAATCTTAACACTAGAATAAGGGAACACAATA
TTTCTAAGGAGGAAAGGAAAGCTATTGATTCATTACGGAATGACACTTCA
ATTATCATCAAGGGGGCTGACAAGGGTTCGTGTATTGTGGTTTGGGATCG
GGAGGATTATCTTCGGGAAGCTGAGTCGCAGTTGGGAGATGAGAGTGTGT
ATGAGAAGCTCAGTGGGGATGCTGTTAGTCCGCTCATTGAGGTTGTCAAG
TCTTGCATTGACTCTATTGATAAAAGAGGTGACATTCCTAGAGATACTTT
GGATTATTTTCTGGTTGAAAACCCTAAGATTGGTCGCTTTTATTTATTAC
CAAAAATCCACAAACGACTTTAAAGGGTTCCCGGGAGACCTGTCATTTCA
AA

Coding sequence (CDS) from alignment at sc0000287:251836..252587

>TCONS_00018115 ID=TCONS_00018115|Name=TCONS_00018115|organism=Clytia hemisphaerica|type=CDS|length=387bp|location=Sequence derived from alignment at sc0000287:251836..252587 (Clytia hemisphaerica)
ATGTATCTTAGTCGTTTGGAAGAAGAAATTCTTAATCTTAACACTAGAAT
AAGGGAACACAATATTTCTAAGGAGGAAAGGAAAGCTATTGATTCATTAC
GGAATGACACTTCAATTATCATCAAGGGGGCTGACAAGGGTTCGTGTATT
GTGGTTTGGGATCGGGAGGATTATCTTCGGGAAGCTGAGTCGCAGTTGGG
AGATGAGAGTGTGTATGAGAAGCTCAGTGGGGATGCTGTTAGTCCGCTCA
TTGAGGTTGTCAAGTCTTGCATTGACTCTATTGATAAAAGAGGTGACATT
CCTAGAGATACTTTGGATTATTTTCTGGTTGAAAACCCTAAGATTGGTCG
CTTTTATTTATTACCAAAAATCCACAAACGACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010166XLOC_010166Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018115-proteinTCONS_00018115-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018115-exon-sc0000287-1491911889:251836..252587TCONS_00018115-exon-sc0000287-1491911889:251836..252587Clytia hemisphaericaexon
TCONS_00018115-exon-sc0000287-1510915933:251836..252587TCONS_00018115-exon-sc0000287-1510915933:251836..252587Clytia hemisphaericaexon
TCONS_00018115-exon-sc0000287-1575043694:251836..252587TCONS_00018115-exon-sc0000287-1575043694:251836..252587Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:251836..252587 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.210991	0.509707	1.03568	0.651378	0.17622	0	0.168001	0.314561	0	0.136396	0	0.0435138	0.217266	0	0.245967	0.199071	0.0490479	0.358136	0.208363	0.218036	0.126342	0.393393	0.0749136	0	0.140298	0	0.0895894	0	0.217555	0.221655
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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