TCONS_00018099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018099
Unique NameTCONS_00018099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1036

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018099 ID=TCONS_00018099|Name=TCONS_00018099|organism=Clytia hemisphaerica|type=transcript|length=1036bp
CTAACCTCCAATAAATAACAAATCTTAAAATCAGAATTctttaaaaaggt
aaaaaataaacTATGGTGGAAGGCTGTGAGGAAGTAAAGCTTCCCAATTT
CTACGTCTCCATCATACTAGAATCGTTAGCATCATTTCTCCTCGTTTTCA
TCGGTGGTTCAGTTTACGTCAAATATGAACGTCCATACAACGTCTCAAAC
GTGTACGAAATAGCCGTTGTTTTTGGTGGAATGTTAACAGTGTTATCTCA
ATGTTTAAAAGACGTTTCGAAAGCTCATATCAACCCAATCATCACACTTG
CTAGCACGTTGACAAAGAGGATTTCATTGCTTCGTGCTCTTTGTTACATT
GTTTTTCAGTTTGCCGGTGCATTGGCAGGCGTTTATGCATTAGACGCAAT
GGTACCTAAAGCGGCCGCGCGTGCGGTTGGAATGACCGTTTTGTCCGCCG
ACACAACACTACTCAAAGGATTGGTATTTGAAATGATTTTCTCCTTTATC
TATACATGGATACATTTCGCTTCAAGAAATTCGAGAGACACATTCAAAGG
ATTCAGTGGACCACTCGCTATTGGTATTTTCTACGCTTTAAGTCACATCA
TTTTAGTTGAGCACACTGGATGTAGCTTGAATCCAGCTCGTTCACTTGCA
CCGGCCATCTATGAAAACAACTTCAATGAATTATGGGTTTTCATCATTGG
TCCTTTTTTGGCGGGTGCTTTGTCTGGATTGGTTCATGACTTAATCATTC
ATAGGTCGAAAGGTCATCCCTACCCACGTGCTCGATCATGTAGTATCACA
TGTTGCAAGCCATCTCGTGAAGAAGTAATTATGACAAATCGAAATGCTGT
GGAGAAGGTGGATAATAAAGTACTGACCGGTCATTCATCTGGTCCTGATA
TTATCATCTATCCACCACTTGGCCAAGAGAAACTCGTTTAAGATCAAAAA
CTAAAATACAGACCGTACTGGTCAACATTTTGTAAAGTgatcttttgttt
tcaaatcgCATTTGATGGACATTTGAAAAACTCATG
Run BLAST on NCBI

protein sequence of TCONS_00018099-protein

>TCONS_00018099-protein ID=TCONS_00018099-protein|Name=TCONS_00018099-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MVEGCEEVKLPNFYVSIILESLASFLLVFIGGSVYVKYERPYNVSNVYEI
AVVFGGMLTVLSQCLKDVSKAHINPIITLASTLTKRISLLRALCYIVFQF
AGALAGVYALDAMVPKAAARAVGMTVLSADTTLLKGLVFEMIFSFIYTWI
HFASRNSRDTFKGFSGPLAIGIFYALSHIILVEHTGCSLNPARSLAPAIY
ENNFNELWVFIIGPFLAGALSGLVHDLIIHRSKGHPYPRARSCSITCCKP
SREEVIMTNRNAVEKVDNKVLTGHSSGPDIIIYPPLGQEKLV
Run BLAST on NCBI

transcript from alignment at sc0000287:15321..20028-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018099 ID=TCONS_00018099|Name=TCONS_00018099|organism=Clytia hemisphaerica|type=transcript|length=4708bp|location=Sequence derived from alignment at sc0000287:15321..20028- (Clytia hemisphaerica)
CTAACCTCCAATAAATAACAAATCTTAAAATCAGAATTCTTTAAAAAGGT
AAAAAATAAACTATGGTGGAAGGCTGTGAGGAAGTAAAGCTTCCCAATTT
CTACGTCTCCATCATACTAGAATCGTTAGCATCATTTCTCCTCGTTTTCA
TCGGTGGTTCAGTTTACGTCAAATATGAACGTCCATACAACGTCTCAAAC
GTGTACGAAATAGCCGTTGTTTTTGGTGGAATGTTAACAGTGTTATCTCA
ATGTTTAAAAGACGTTTCGAAAGCTCATATCAACCCAATCATCACACTTG
CTAGCACGTTGACAAAGAGGATTTCATTGCTTCGTGCTCTTTGTTACATT
GTTTTTCAGTTTGCCGGTGGTAAGAGTTGTTCCTATCTTTTTCTACAAGT
TTTACAGATAATGGAAACGTTTGTATCACCTATGTTGAGACGACGCCCCT
GGACTCTTTTAAAAATTTTTCAGGACCCCCTGGGAAAAAGTCCTCAGTTC
TCATTGATTGACCACCCTGGATTTCTGACCTCGTCTTACTGACCAACCTG
GATTTTTATACCCTTTACACCCTGGACCACACCTCCTCAACAGACTATTT
CTGGAGTAGCCCAACCCACTTTTCTGAGCGTAACTTGGCTTTTAAAACAA
CACAGTCTAGAGTGAACTAGTCCAGTTTTTTGGGATATTTCACTCTTTTT
TTATCCACTGCTATATGATCCTTGCAATCTCTAAATAATGAATTCTGTTT
TCTTCGTCCACGCCTCATCGATGTGACCACCATTTTTGCTTAACCCCCTT
CTTTAACCTTCCATTATGATTTGTTGTTACATGGATAGCCTATAATCTAG
GAATTTTAGACATTCTTTGGATTGTTCAAACAGTACTATCTATGAACTGA
ACTGAATTGAACTGAACATTAGGATTAGGACCAGGAATATAAAACAAGTC
CAGAGCCTCCGATTACTCTCAGTAGATCTTTGCTTTCCTTTACAAAAAGT
ATTGTACCATTGAAAAATATGGTTTTATACAAAATAAGCTCCTTCTATCA
TTAAAAGTTTCCGATAATCTGAAGTCTTTCATTTTAAGCATTGGCAGGCG
TTTATGCATTAGACGCAATGGTACCTAAAGCGGCCGCGCGTGCGGTTGGA
ATGACCGTTTTGTCCGCCGACACAACACTACTCAAAGGATTGGTATTTGA
AATGATTTTCTCCTTTATCTATACATGGATACATTTCGCTTCAAGAAATT
CGAGAGACACATTCAAAGGATTCAGTGGACCACTCGCTATTGGTATTTTC
TACGCTTTAAGTCACATCATTTTAGTAAGTGTATACCTTATCGGGGAAAA
CTTCATCGGGGAAAATCTTTATCGGGGAAAATTTTCGTCGGGGAAAAATT
CGTCACTCGCTGGTAGTTGGTAAACGCATTAAGGGCTCTGACCATAGTGA
ATTTTTCATAATTGCCATGTTCAAAATGTGTTTTCTGACTGATGTAACCA
ACAAAACTATGGCATGTTATACATTTTCTGTTAGACAAACTATTCCTGAA
TCTGAAAATTCAAAAATTGCATTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCTTAATTAC
TCTTAAGGGATTCGATTAAAAAGCAATTTATAAAGGCAATTCTTTGTTAA
AAGTGTTAAGGAACTTGAAATATAACTTTTATGTTCAAATGTCTATGGTC
AGAGCCCTTAAGGCCGGGGAAAATTTTCGTCGGGGAAAATATCCGTCACT
TGTCCAAAATATCGTCACTTTTCCCCGACGAAGTTTTCCCCGATAAGATA
ATAAGTATGGAGTGAGGAGGTGAATTCTTCAATTTACTTAGTATTTTACT
GTGTACAGCTGAGTCTCTCTAACTCGAATGTCTCCTAACTCGAACAAGTT
TCTTTTCCCTTTCTGTTAACAACACCTTATAAACCTTACTATATAACTCG
AACAAGTTTTTTCATCCCTCCCCGTGCGGGTTCGCGTTCCACTGCATAAC
AGCTATTGATTGAAAAGATAAATCAAACTTTTTCAAAATATAGTCAAAAT
TGCTAAACTAAGGTTTTCGGACATTCTTCAAAAAATAATATGTGCGCATT
TTAGACTCATGGCTGACTCATCGAGGAGAGTGTAACTACAAAATAATTTT
TTTTTATCATTTACATTTTCTACATAGGTTGAGCACACTGGATGTAGCTT
GAATCCAGCTCGTTCACTTGCACCGGCCATCTATGAAAACAACTTCAATG
AATTATGGGTAAAGAATGCTTGCATTTTTTTAATCAAGTGAATCACAGCT
TGGTGATCTTTCACTTTACAAAAGCTAAGCACACCGGGTACACCGCAATG
CTTGTATTTTTTAGAACGTGATGAAATTACAATCTGTTTGTCAAAATATC
TGTACAATTCACTTTATTTGCTCTAAACAAGTCAAATACTGTAATGAGGA
TATAGACATCATCCAGGATTTGGCTAAAAGTGGGCTAAAATTTCGTCCCC
TGTGGGAAAGATACTCTACAATTTCAGCCCCACTGGGAAATTTAGCTTTT
ATCCCCGTTCGAAATTCAATAGGATAAATTGCAGTCCAAAACTATCCCGC
TGGATTTTTTGACCTGGGAACAATAAAATTTATACCCCCATTGGGAAAAT
TTTCATCCGGCCCACTGTAGCAAAAAGTTCCACCGGGGCTGTGAGGCAAG
GGTGTTTTAAAGCCGTTCAAATTTTGTAAATTAATTCTTTGTATTTTCAG
GGGCAGGAATGGTTAGAAATCATCAGTTAACGGTCTTTTATAAGAACTTC
AAACATTGAGTTTTGGTTTTATATGGTTTATTCTTATATAAAACAGGTGT
ATTACTTAGAATTCTAATATTCCATATACTCTTCATTTCTTTCCTTTTAG
GTTTTCATCATTGGTCCTTTTTTGGCGGGTGCTTTGTCTGGATTGGTTCA
TGACTTAATCATTCATAGGTCGAAAGGTCATCCCTACCCACGTGCTCGAT
CATGTAGTATCACATGTTGCAAGGTAAGATATTCAAAGAATTGAGATATC
TACTTTAATCGTAGAAATTTTAGCGAGACTAATTTTAGCGTATATTAGCG
AGTCAGGAAAATCTTGATTTTTTTGGATTTATTTTGGCGAATACTCGTAT
TACATTATTGACTGAATTTGTTTTCTCGCATTTCTTTGCACTGAAACCCT
TCTTATTGATAAAAATGCATCAAGGCAATATAACCAGAAATTTCGCGCGG
AAAAATTTTAGCAATCTGTCGATTCGGCGTGTTTTAGTAAGATTTATTTT
AGCGAAAATAGGGAAAACTCGCTAAAACGCTGAAATTAGTCTCGCTAAAA
TTTCTACGATTAAAGTATAGCATTTTTGAAGGACAATGAACATTCCAAAT
TTAACCAATACCTAATATTTTCTTTGTCACATCCCCGGAGAATGTAAATG
TTACCAAGTCACTGAGAGTAAGTCACATGTATGTTTTATATATTTAAAAA
ATCTATATTAGATAAAATTATTCTTATTTTTTGTTTTCTTTGTTTAAAAA
TTTACTTAAAGAAAGGTAACCCAACTGGCACACAACGTTGTTTCAACGCT
TATCTAACGTTCATAACGTCCATTTAACGTTAGATTAACGTTGAAACAAC
GTTGTGAGCCAGCTGGGAAACTAATCAGGTGCAAGAATCTCAAATTTTTT
TAAAGGAAGAAAAGTTTCGTCTCTAATTGATGAACAACCAATCTCGTACC
TAGAGCCACTTATACTACTTTTCAATTTTACTTTTCAACTTTCGTGAACC
TTTCAGAATTTATCAAACAGCCAGCTAAGGGACTGTATACGAGTTTAACT
AAACAGCAGGATCTTTTATTTTCATTCTTAGCCATCTCGTGAAGAAGTAA
TTATGACAAATCGAAATGCTGTGGAGAAGGTGGATAATAAAGTACTGACC
GGTCATTCATCTGGTCCTGATATTATCATCTATCCACCACTTGGCCAAGA
GAAACTCGTTTAAGATCAAAAACTAAAATACAGACCGTACTGGTCAACAT
TTTGTAAAGTGATCTTTTGTTTTCAAATCGCATTTGATGGACATTTGAAA
AACTCATG

Coding sequence (CDS) from alignment at sc0000287:15321..20028-

>TCONS_00018099 ID=TCONS_00018099|Name=TCONS_00018099|organism=Clytia hemisphaerica|type=CDS|length=4395bp|location=Sequence derived from alignment at sc0000287:15321..20028- (Clytia hemisphaerica)
CCATCTCGTGAAGAAGTAATTATGACAAATCGAAATGCTGTGGAGAAGGT
GGATAATAAAGTACTGACCGGTCATTCATCTGGTCCTGATATTATCATCT
ATCCACCACTTGGCCAAGAGAAACTCGTTTAAGTTTTCATCATTGGTCCT
TTTTTGGCGGGTGCTTTGTCTGGATTGGTTCATGACTTAATCATTCATAG
GTCGAAAGGTCATCCCTACCCACGTGCTCGATCATGTAGTATCACATGTT
GCAAGGTTGAGCACACTGGATGTAGCTTGAATCCAGCTCGTTCACTTGCA
CCGGCCATCTATGAAAACAACTTCAATGAATTATGGCATTGGCAGGCGTT
TATGCATTAGACGCAATGGTACCTAAAGCGGCCGCGCGTGCGGTTGGAAT
GACCGTTTTGTCCGCCGACACAACACTACTCAAAGGATTGGTATTTGAAA
TGATTTTCTCCTTTATCTATACATGGATACATTTCGCTTCAAGAAATTCG
AGAGACACATTCAAAGGATTCAGTGGACCACTCGCTATTGGTATTTTCTA
CGCTTTAAGTCACATCATTTTAATGGTGGAAGGCTGTGAGGAAGTAAAGC
TTCCCAATTTCTACGTCTCCATCATACTAGAATCGTTAGCATCATTTCTC
CTCGTTTTCATCGGTGGTTCAGTTTACGTCAAATATGAACGTCCATACAA
CGTCTCAAACGTGTACGAAATAGCCGTTGTTTTTGGTGGAATGTTAACAG
TGTTATCTCAATGTTTAAAAGACGTTTCGAAAGCTCATATCAACCCAATC
ATCACACTTGCTAGCACGTTGACAAAGAGGATTTCATTGCTTCGTGCTCT
TTGTTACATTGTTTTTCAGTTTGCCGGTGCCATCTCGTGAAGAAGTAATT
ATGACAAATCGAAATGCTGTGGAGAAGGTGGATAATAAAGTACTGACCGG
TCATTCATCTGGTCCTGATATTATCATCTATCCACCACTTGGCCAAGAGA
AACTCGTTTAAGTTTTCATCATTGGTCCTTTTTTGGCGGGTGCTTTGTCT
GGATTGGTTCATGACTTAATCATTCATAGGTCGAAAGGTCATCCCTACCC
ACGTGCTCGATCATGTAGTATCACATGTTGCAAGGTTGAGCACACTGGAT
GTAGCTTGAATCCAGCTCGTTCACTTGCACCGGCCATCTATGAAAACAAC
TTCAATGAATTATGGCATTGGCAGGCGTTTATGCATTAGACGCAATGGTA
CCTAAAGCGGCCGCGCGTGCGGTTGGAATGACCGTTTTGTCCGCCGACAC
AACACTACTCAAAGGATTGGTATTTGAAATGATTTTCTCCTTTATCTATA
CATGGATACATTTCGCTTCAAGAAATTCGAGAGACACATTCAAAGGATTC
AGTGGACCACTCGCTATTGGTATTTTCTACGCTTTAAGTCACATCATTTT
AATGGTGGAAGGCTGTGAGGAAGTAAAGCTTCCCAATTTCTACGTCTCCA
TCATACTAGAATCGTTAGCATCATTTCTCCTCGTTTTCATCGGTGGTTCA
GTTTACGTCAAATATGAACGTCCATACAACGTCTCAAACGTGTACGAAAT
AGCCGTTGTTTTTGGTGGAATGTTAACAGTGTTATCTCAATGTTTAAAAG
ACGTTTCGAAAGCTCATATCAACCCAATCATCACACTTGCTAGCACGTTG
ACAAAGAGGATTTCATTGCTTCGTGCTCTTTGTTACATTGTTTTTCAGTT
TGCCGGTGCCATCTCGTGAAGAAGTAATTATGACAAATCGAAATGCTGTG
GAGAAGGTGGATAATAAAGTACTGACCGGTCATTCATCTGGTCCTGATAT
TATCATCTATCCACCACTTGGCCAAGAGAAACTCGTTTAAGTTTTCATCA
TTGGTCCTTTTTTGGCGGGTGCTTTGTCTGGATTGGTTCATGACTTAATC
ATTCATAGGTCGAAAGGTCATCCCTACCCACGTGCTCGATCATGTAGTAT
CACATGTTGCAAGGTTGAGCACACTGGATGTAGCTTGAATCCAGCTCGTT
CACTTGCACCGGCCATCTATGAAAACAACTTCAATGAATTATGGCATTGG
CAGGCGTTTATGCATTAGACGCAATGGTACCTAAAGCGGCCGCGCGTGCG
GTTGGAATGACCGTTTTGTCCGCCGACACAACACTACTCAAAGGATTGGT
ATTTGAAATGATTTTCTCCTTTATCTATACATGGATACATTTCGCTTCAA
GAAATTCGAGAGACACATTCAAAGGATTCAGTGGACCACTCGCTATTGGT
ATTTTCTACGCTTTAAGTCACATCATTTTAATGGTGGAAGGCTGTGAGGA
AGTAAAGCTTCCCAATTTCTACGTCTCCATCATACTAGAATCGTTAGCAT
CATTTCTCCTCGTTTTCATCGGTGGTTCAGTTTACGTCAAATATGAACGT
CCATACAACGTCTCAAACGTGTACGAAATAGCCGTTGTTTTTGGTGGAAT
GTTAACAGTGTTATCTCAATGTTTAAAAGACGTTTCGAAAGCTCATATCA
ACCCAATCATCACACTTGCTAGCACGTTGACAAAGAGGATTTCATTGCTT
CGTGCTCTTTGTTACATTGTTTTTCAGTTTGCCGGTGCCATCTCGTGAAG
AAGTAATTATGACAAATCGAAATGCTGTGGAGAAGGTGGATAATAAAGTA
CTGACCGGTCATTCATCTGGTCCTGATATTATCATCTATCCACCACTTGG
CCAAGAGAAACTCGTTTAAGTTTTCATCATTGGTCCTTTTTTGGCGGGTG
CTTTGTCTGGATTGGTTCATGACTTAATCATTCATAGGTCGAAAGGTCAT
CCCTACCCACGTGCTCGATCATGTAGTATCACATGTTGCAAGGTTGAGCA
CACTGGATGTAGCTTGAATCCAGCTCGTTCACTTGCACCGGCCATCTATG
AAAACAACTTCAATGAATTATGGCATTGGCAGGCGTTTATGCATTAGACG
CAATGGTACCTAAAGCGGCCGCGCGTGCGGTTGGAATGACCGTTTTGTCC
GCCGACACAACACTACTCAAAGGATTGGTATTTGAAATGATTTTCTCCTT
TATCTATACATGGATACATTTCGCTTCAAGAAATTCGAGAGACACATTCA
AAGGATTCAGTGGACCACTCGCTATTGGTATTTTCTACGCTTTAAGTCAC
ATCATTTTAATGGTGGAAGGCTGTGAGGAAGTAAAGCTTCCCAATTTCTA
CGTCTCCATCATACTAGAATCGTTAGCATCATTTCTCCTCGTTTTCATCG
GTGGTTCAGTTTACGTCAAATATGAACGTCCATACAACGTCTCAAACGTG
TACGAAATAGCCGTTGTTTTTGGTGGAATGTTAACAGTGTTATCTCAATG
TTTAAAAGACGTTTCGAAAGCTCATATCAACCCAATCATCACACTTGCTA
GCACGTTGACAAAGAGGATTTCATTGCTTCGTGCTCTTTGTTACATTGTT
TTTCAGTTTGCCGGTGCCATCTCGTGAAGAAGTAATTATGACAAATCGAA
ATGCTGTGGAGAAGGTGGATAATAAAGTACTGACCGGTCATTCATCTGGT
CCTGATATTATCATCTATCCACCACTTGGCCAAGAGAAACTCGTTTAAGT
TTTCATCATTGGTCCTTTTTTGGCGGGTGCTTTGTCTGGATTGGTTCATG
ACTTAATCATTCATAGGTCGAAAGGTCATCCCTACCCACGTGCTCGATCA
TGTAGTATCACATGTTGCAAGGTTGAGCACACTGGATGTAGCTTGAATCC
AGCTCGTTCACTTGCACCGGCCATCTATGAAAACAACTTCAATGAATTAT
GGCATTGGCAGGCGTTTATGCATTAGACGCAATGGTACCTAAAGCGGCCG
CGCGTGCGGTTGGAATGACCGTTTTGTCCGCCGACACAACACTACTCAAA
GGATTGGTATTTGAAATGATTTTCTCCTTTATCTATACATGGATACATTT
CGCTTCAAGAAATTCGAGAGACACATTCAAAGGATTCAGTGGACCACTCG
CTATTGGTATTTTCTACGCTTTAAGTCACATCATTTTAATGGTGGAAGGC
TGTGAGGAAGTAAAGCTTCCCAATTTCTACGTCTCCATCATACTAGAATC
GTTAGCATCATTTCTCCTCGTTTTCATCGGTGGTTCAGTTTACGTCAAAT
ATGAACGTCCATACAACGTCTCAAACGTGTACGAAATAGCCGTTGTTTTT
GGTGGAATGTTAACAGTGTTATCTCAATGTTTAAAAGACGTTTCGAAAGC
TCATATCAACCCAATCATCACACTTGCTAGCACGTTGACAAAGAGGATTT
CATTGCTTCGTGCTCTTTGTTACATTGTTTTTCAGTTTGCCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010150XLOC_010150Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018099-exon-sc0000287-1575043694:19660..20028TCONS_00018099-exon-sc0000287-1575043694:19660..20028Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1575043694:18705..18940TCONS_00018099-exon-sc0000287-1575043694:18705..18940Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1575043694:17171..17251TCONS_00018099-exon-sc0000287-1575043694:17171..17251Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1575043694:16406..16528TCONS_00018099-exon-sc0000287-1575043694:16406..16528Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1575043694:15321..15547TCONS_00018099-exon-sc0000287-1575043694:15321..15547Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1510915933:19660..20028TCONS_00018099-exon-sc0000287-1510915933:19660..20028Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1510915933:18705..18940TCONS_00018099-exon-sc0000287-1510915933:18705..18940Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1510915933:17171..17251TCONS_00018099-exon-sc0000287-1510915933:17171..17251Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1510915933:16406..16528TCONS_00018099-exon-sc0000287-1510915933:16406..16528Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1510915933:15321..15547TCONS_00018099-exon-sc0000287-1510915933:15321..15547Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1491911889:19660..20028TCONS_00018099-exon-sc0000287-1491911889:19660..20028Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1491911889:18705..18940TCONS_00018099-exon-sc0000287-1491911889:18705..18940Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1491911889:17171..17251TCONS_00018099-exon-sc0000287-1491911889:17171..17251Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1491911889:16406..16528TCONS_00018099-exon-sc0000287-1491911889:16406..16528Clytia hemisphaericaexon
TCONS_00018099-exon-sc0000287-1491911889:15321..15547TCONS_00018099-exon-sc0000287-1491911889:15321..15547Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018099-proteinTCONS_00018099-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:15321..20028 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0428993	0	0	0	0	0	0.165462	0.619612	1.46254	0.761229	2.26006	1.14283	6.26994	6.96298	6.90507	7.00596	2.54414	3.23483	1.5505	0.620362	3.56707	2.79192	2.01669	2.90671	2.30296	4.02845	0.705882	0.439446	0.0476149	0.0485121
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000425MIP
IPR023271Aquaporin-like
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00018099 vs. Swiss-Prot (Human)
Match: AQP1 (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 9.417e-37
Identity = 78/230 (33.91%), Postives = 127/230 (55.22%), Query Frame = 3 
Query:   75 CEEVKLPNFYVSIILESLASFLLVFI--GGSVYVKYERPYNVSNVYE---IAVVFGGMLTVLSQCLKDVSKAHINPIITLASTLTKRISLLRALCYIVFQFAGALAGVYALDAMVPKAAARAVGMTVLSADTTLLKGLVFEMIFSFIYTWIHFASRNSRDTFKGFSGPLAIGIFYALSHIILVEHTGCSLNPARSLAPAIYENNFNELWVFIIGPFLAGALSGLVHDLII 749
              E K   F+ +++ E LA+ L VFI  G ++  KY    N + V +   +++ FG  +  L+Q +  +S AH+NP +TL   L+ +IS+ RAL YI+ Q  GA+     L  +       ++G   L+      +GL  E+I +        A+ + R    G S PLAIG+  AL H++ +++TGC +NPARS   A+  +NF+  W+F +GPF+ GAL+ L++D I+
Sbjct:    2 ASEFKKKLFWRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLATTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNFSNHWIFWVGPFIGGALAVLIYDFIL 231
The following BLAST results are available for this feature:
BLAST of TCONS_00018099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AQP19.417e-3733.91Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3[more]
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