TCONS_00018090 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018090
Unique NameTCONS_00018090
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5110

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018090 ID=TCONS_00018090|Name=TCONS_00018090|organism=Clytia hemisphaerica|type=transcript|length=5110bp
AACGGAATCAATTTCGAGTTACATATAATAAATCTACCAAAAGAGACACT
GATTTACTTGAAAGCAGTTTAGAACGGAATCAATTTCGAGGGACATATAC
TAAATCTACCAAAAGAGACAATGATTTACTTGAAAGCAGTCTAGAACGGA
ATCAATTTCGAGGGACATATACTAAATCTGCGAATAAGGACTCTGATTTA
CTTGAAAGCAGTCTAGAACGGAATCAATTTCGAGGGACATATACTAAATC
TACAGGAACAAACTTTGAAAGAAATTCGAACTCAACAGGAACTtatgtta
aagaaaaatttgaagccATATCCCCAATTCAAGACTCTTCAAACGTCTTA
ACATTCGAGCGTAATGCAAATGCCNCTGAAGCCATATCTTCAATTCAAGA
CTCTTCAAACGTCTTAACATTCGAGCGTAATGCAAATGTCTCAGGGACTT
ATACGAAACAAAAAAGTGAGATCTCTCCAACACATTCTTCGAAATTTGAA
CACAACACAAACACTTCTGTAACGTATGAGCAATCTCAGGAAATATCCCC
AAAACACGAGAAAAGTACGGCATCAGCTACAAGCCCCTCTAAACGTAAAA
GTCGTCCAGGAACTTATGTTTTGTCTGGTACAAATTCCCCTCAGAACCTC
TTAATTCAAAATTCACCTTCACATAAATCATCAGATCGCTCTCAATCACC
AGGAGAAAAGACAACTGATTCGCCACAAAAATCACCAATGTCTACCAGGA
GTCTATTTAAACGAACATCGAATCCAACATCTCCAACGAAAACAAAAGAT
GCAGAACACGAGATTCGATTAAATTCATCCGATTCACCAACATGCATTGA
TGTCAAATCACCAGCTGCATCACCAATACATCTCAATGGGAAACCTCCTT
TACCACAATCAAATACTCCGTCAAAAAGACATTCAAACACTACAAATCCT
CCAAAATCACCAGTCAGATCTCCTACCAACCATCCACTATCAACCTCCGA
AAGGCTTTCAGATTCACCACAACGATCATCTCCTTCCTATTCAACTTCAC
CAAGAGAATCACATCACCAAAGATCTTCATCAGATTCATCTTCAACACAC
TGGTCACCTCCAATCAAAAACGCATTCATATTCTCACCAACCAAACGAAG
AACTCTTGAACGTTCCTCATCCACTAGTGAAGATAGCGTATCACCGACTA
AATCAACTTCACCAGCAGATTCCAGATCACCACTCACCAAATCACAATCT
TTATCAAACATCCAAATCCTCATAAACGAAGAACCACAATCACCTGATAA
ATCCAGACTGGCTGCATCACAACCTAACCTCTTCGCACTCAAAGATATGC
GTAAACGGTTAGGATCTAGCACATTCAGTAAACTCGGTATGCTCAAAAAA
GCAATGTCCACATCGTTAACCAAACTAACACAACTCCATGCTGTCCAAAA
AGAGATTTCCTTAAGTACAGAAACCTTAACAGATTTGGAATCGGAACAAG
ATATAACCCTTACATCACCAGCTTCCTCGACATTCAACGAAAGCGATATT
GCCACAACCTCAAATGAGAATCTCTTAAACGCTTCAGAATCAGACTCCAA
CATTACCAACTACAAAACTTTCTCACATGCTGACACATTGAAATCCATGA
ACACTATTGAATACGATATCGAAATTACAGATGATTTAGTATCCGACTTT
AACGACGAACAATCTTCATCAAAACCAGTATCACTTCCAAGTCAACCCGA
TCAAAATGTTGAGAAAATTACCAACAATAACGGAGTTGTATTGCGTCAAA
AGAAAGGTCGTTCAGCAGTGGACGAATCACATACATCAACTTATGTATTG
ACCAATCAACAGAAGCGAGGAACCTTCGTCATAGCTACAGGTGAATCCTC
GCCAAAACATACAATGACTGAAACATTGATTTATACTGATGACCCATCTT
ATACcaatgaaaacgaaagtgaaagtggaaGTGAAATACCCTCAGATAGT
ATACAGAGAAATTCTCCGCTGAGACGCCGGACGACCGTTGATAAGAACCA
AAAACCTCGAGTAACTGCTCGAATGTCAAATGAAGGATCGCCTTCCGACC
CATCAGGAGCTGGCTACCACCCTTCGGGACCTAGCTCTAAATCACCTGAA
TCGTCACCAAGAAGGAGTAAACGCCTCAATNCTTCGGGACCTAGCTCTAA
ATCAACTGAATCGTCACCAAGAAGGGGTAGACGCCTCAATAAACAAACCA
CACCTGTTCATACTAAATTCTTGAGAAGGAAAAGCAACAAGGTTTCAAGT
CCTAACTTGAAATCGAAACGAGAAGAAGAAGGGGATGCTCCGCTCAGTTC
ACGTTTAGCTGCGCTTCGTATGAAATTGGAAGAGAAACGACGACagtttg
aagaagaaaagaaaaccaAACTGAAAGAATGGAACGAGGAGCGAGCGCAA
GCCTTGCAGAGCGCTTTCTTTGTTTCCAtggatgaaaaagaaaacaaaga
ccCCGTCAATGCGGACGCTTCAGGAACCACTACACGACAAGAAAGTACAC
ATGGTAAGAAGTCTGACATCACTCCTCAAGACTACATCCGTCAGAAACAA
TTAGAAAAGCAAAATTCACCCGGACAACAAACTGAAAAGAAATCCTGGTT
CTTTGATATCAATGGCCAACAGCAGGACGTAGGAGAGATAAAACACACTC
CAAATATCAGCGGTGAAGGGAACGCCCCAACCGCCCCTAACCCACCTTTA
TCCTCTACAATCCCTGATGAGCAACCATCTATTCAATCAACAGACCAGAA
AGTAGCCTCTATCCGTACTTCATATCAAGGAGTAGAGCCTAGTTTCTCAC
AAGTAAACCAATCTGCAGCACACATTAACCGGTCATCTTACAATGGTACA
GAGGCTAACTTCAAGCTAGAAAGTAAGCCTACGCATCCGACCAATCGAGC
TTCATATCATGGACCAGAGTCTAGTTATCACAAAGAAACACAAAATCTAA
CCAACGCCAACAGATCCTCCTACACTGAAGGAATGACACCAACTTTATCA
GCACTTCAACGACTACAACAGACTACCAATGAACTTAGTACCCATATCTC
TCAAAATAGTTCATCAGCGTCAGAGCAAAGACAACAAACAGAACAGaACT
CTAATCAAAAGATGGATACTATCGAGCCAACCACAACTTCAGCATCAACA
ACAATGGAACCACCAAATATACCATCACAAGATGAAACGCCATCTGATAT
ACAAAACACTCACATCTCAAATATACCAGAATCTCAACCCTTGATTCAAC
AAGAACCCAAAACAGAAGATCCTGTAATTGAACAATCTCAAAACGAAATC
CCTCTACCGCAAAGTGAGATCATGGTTATGCCTCAACAGACTGAAACAGA
GACCCTGAATGTGGACCCAGTACGGCCTATACCATTTTTAAAAGAGCCAG
TATCAAGTGAAATTGTCAATGATATTGCCAATGACGTGGGCAATCTTCAG
ATCCAAGATGCCATTAATGAAATTGCAAGTGAACAACCTGAACAATCGAG
TCAACAAGTTGAACAAGGAACTGGAGAGGAGGAACATGGGTCATCGAGCC
CAACCAAGAATTCAGCTCTTGTGTTCACTTTTGGTGGCGAAGAAGAGACA
GAGAGCGCGGGGATAACACCAGAGCAGATCAAGAAACGCGAACGATTTCT
ACAGAAACGTCAGAAACAGATAGaagagaaaaaattgaaacgaGAAGCAG
AGCTAGAAAAGAAACGAAAAAAAGACGAAGAAGCCCTTCAAGAAAAATTA
CGAATGGATGAGGAAAAAGAACGCGTCAAAAAGGAGAAAATTCGTCAGCG
CGCTCAATCGGCAGAAAATCACGAGCGGGCGGCTCATCACCAGGACAATC
AACGACAATATTCGGCGTCCGCTTTCACTGTTAGTATGAATTCAACGAGT
TCAAGTCCCTCACATCAGCTACGACGTCCTCCAAGTAGCGAACATTTACG
TCGTTTGCAAAGTGGAAGTCCGTCCCATCACGCAACCAACGGTGATGGGA
CGCCGGACGAATCGAAATACTCGGAATACACGGGCCCTTCCGCATACCAA
AAACCGTCCGGGAAGTCGAATCGTAAAATTATCCAGAATGCGATAACATA
TTGTTGCTTATCGGGCGGTGTTAATCGTGATGCCAAAGATAGATGTCTGG
AGGCGATTGAGAAGAGTGAAGCGCACCATTTCGTTGTCCTGTTTCGAGAT
CCGATGAAATTTCGCGGTGTTTACGAATATTACCCTGAAAATGATTTGgt
gACGAAAATTTATGGAACCGGACCAAAGTCAATCACGTCAAAGATGACTG
AGAAATTCTTTAGGTATAACAGCGGTGGGAAAGCCTTCAACGGAATGTTG
ATGAAAGACCTTTCCATACAATGTGATGGATTCACCATCAAGAAAGAACT
ATGGGAGAAAAAACCAACGGGCGGAACGCCCTCTAAAACACCATTACGGA
AAAAAGTTCGTTGACTGAATCTGAGCAggaatgttgttgttgttattata
aTAAGTCTTTAAAATTGAACCAACTGCGAACGTCAACTTGGGTCTTCCCA
ATAAaagtgcaactttgataagtacTGTATTGAACTTTCGGAGAATTGAA
CCAATAAATGaattctttatttatacaaaggTATAAACCCCTCCTCTACA
ACATTTTAACACAAAGAGTATCCCAAAGAGTTCATCTGACGAAACTGTGT
TGCATTTTTCTCGTTTTTGATGTTCATTTTTTTGTCGTTGTCaaatactt
ttaattttttttgtttgttttaactttgatattttgtcattttatacATA
TCACTACCAACATTTTAATATTTAGGTTTAccgaaaaaattgacaaaaaa
tatatattggaTGATAGATAGTATTTATAAAGTGAAAAAGAGAAGACATt
gtaaataatgaaaaatgtaaatatttcttAGATATTTTATGGTATTAGTA
ATATATCTTTATGAAAAATCAAGGTATTTCTAAAACACGAAAATGTTTAC
TTCTTACAAACCCGCTTGTTTCCTGTCTAAGATGAGTCGCACcaaccatt
gagtttgaag
Run BLAST on NCBI

transcript from alignment at sc0000287:173186..186003+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018090 ID=TCONS_00018090|Name=TCONS_00018090|organism=Clytia hemisphaerica|type=transcript|length=12818bp|location=Sequence derived from alignment at sc0000287:173186..186003+ (Clytia hemisphaerica)
AACGGAATCAATTTCGAGTTACATATAATAAATCTACCAAAAGAGACACT
GATTTACTTGAAAGCAGTTTAGAACGGAATCAATTTCGAGGGACATATAC
TAAATCTACCAAAAGAGACAATGATTTACTTGAAAGCAGTCTAGAACGGA
ATCAATTTCGAGGGACATATACTAAATCCACCAAAAAAGACAATGATTTA
CTTGAAAGCAGTCTAGAACCGAATCAATTTCGAGGAACATATACTAAATG
CACCAAAAAAGACAACGATTTACTTGAAAGCAGTCTAGAAAGGAATCAAT
TTCGAGGGACATATACTAAATCTGCGAATAAGGACTCTGATTTACTTGAA
AGCAGTCTAGAACGGAATCAATTTCGAGGTACATATACTAAATGCACCAA
AAAAGACAACGATTTACTTGAAAGCAGTCTAGAAAGGAATCAATTTCGAG
GGACATATACTAAATCTGCGAATAAGGACTCTGATTTACTTGAAAGCAGT
CTAGAACGGAATCAATTTCGAGGGACATATACTAAATCTACAGGAACAAA
CTTTGAAAGAAATTCGAACTCAACAGGAACTtatgttaaagaaaaatttg
aagccATATCCCCAATTCAAGACTCTTCAAACGTCTTAACATTCGAGCGT
AATGCAAATGCCNCTGAAGCCATATCTTCAATTCAAGACTCTTCAAACGT
CTTAACATTCGAGCGTAATGCAAATGTCTCAGGGACTTATACGAAACAAA
AAAGTGAGATCTCTCCAACACATTCTTCGAAATTTGAACACAACACAAAC
ACTTCTGTAACGTATGAGCAATCTCAGGAAATATCCCCAAAACACGAGAA
AAGTACGGCATCAGCTACAAGCCCCTCTAAACGTAAAAGTCGTCCAGGAA
CTTATGTTTTGTCTGGTACAAATTCCCCTCAGAACCTCTTAATTCAAAAT
TCACCTTCACATAAATCATCAGATCGCTCTCAATCACCAGGAGAAAAGAC
AACTGATTCGCCACAAAAATCACCAATGTCTACCAGGAGTCTATTTAAAC
GAACATCGAATCCAACATCTCCAACGAAAACAAAAGATGCAGAACACGAG
ATTCGATTAAATTCATCCGATTCACCAACATGCATTGATGTCAAATCACC
AGCTGCATCACCAATACATCTCAATGGGAAACCTCCTTTACCACAATCAA
ATACTCCGTCAAAAAGACATTCAAACACTACAAATCCTCCAAAATCACCA
GTCAGATCTCCTACCAACCATCCACTATCAACCTCCGAAAGGCTTTCAGA
TTCACCACAACGATCATCTCCTTCCTATTCAACTTCACCAAGAGAATCAC
ATCACCAAAGATCTTCATCAGATTCATCTTCAACACACTGGTCACCTCCA
ATCAAAAACGCATTCATATTCTCACCAACCAAACGAAGAACTCTTGAACG
TTCCTCATCCACTAGTGAAGATAGCGTATCACCGACTAAATCAACTTCAC
CAGCAGATTCCAGATCACCACTCACCAAATCACAATCTTTATCAAACATC
CAAATCCTCATAAACGAAGAACCACAATCACCTGATAAATCCAGACTGGC
TGCATCACAACCTAACCTCTTCGCACTCAAAGATATGCGTAAACGGTTAG
GATCTAGCACATTCAGTAAACTCGGTATGCTCAAAAAAGCAATGTCCACA
TCGTTAACCAAACTAACACAACTCCATGCTGTCCAAAAAGAGATTTCCTT
AAGTACAGAAACCTTAACAGATTTGGAATCGGAACAAGATATAACCCTTA
CATCACCAGCTTCCTCGACATTCAACGAAAGCGATATTGCCACAACCTCA
AATGAGAATCTCTTAAACGCTTCAGAATCAGACTCCAACATTACCAACTA
CAAAACTTTCTCACATGCTGACACATTGAAATCCATGAACACTATTGAAT
ACGATATCGAAATTACAGATGATTTAGTATCCGACTTTAACGACGAACAA
TCTTCATCAAAACCAGTATCACTTCCAAGTCAACCCGATCAAAATGTTGA
GAAAATTACCAACAATAACGGAGTTGTATTGCGTCAAAAGAAAGGTCGTT
CAGCAGTGGACGAATCACATACATCAACTTATGTATTGACCAATCAACAG
AAGCGAGGAACCTTCGTCATAGCTACAGGTGAATCCTCGCCAAAACATAC
AATGACTGAAACATTGATTTATACTGATGACCCATCTTATACcaatgaaa
acgaaagtgaaagtggaaGTGAAATACCCTCAGATAGTATACAGAGAAAT
TCTCCGCTGAGACGCCGGACGACCGTTGATAAGAACCAAAAACCTCGAGT
AACTGCTCGAATGTCAAATGAAGGATCGCCTTCCGACCCATCAGGAGCTG
GCTACCACCCTTCGGGACCTAGCTCTAAATCACCTGAATCGTCACCAAGA
AGGAGTAAACGCCTCAATNCTTCGGGACCTAGCTCTAAATCAACTGAATC
GTCACCAAGAAGGGGTAGACGCCTCAATAAACAAACCACACCTGTTCATA
CTAAATTCTTGAGAAGGAAAAGCAACAAGGTTTCAAGTCCTAACTTGAAA
TCGAAACGAGAAGAAGGTATAGGTTCGTTACTTTAAGGgcgaaaagtcgc
gaaatttcgcgtatttaagtttcgcgatttttactttttgaagaaaattt
acggaagaaactttcgcggttttttgtaaatgttcaattttagtagcaat
aactttcgcgagtggctagggaaagtgaataaaaaattatttaaatcttt
ttcttcaatCGAAAGAGTGATATGCTAATAAATGAAAGATAAACTATTTG
CACTTCTTCCTCTCATTCCGAATCCTAGTCACTGCAATAATATCGATAAT
CTCGACTCTCCTcggcttttaaaacttggaaaaaactttcgcgattttta
ggaaaatttcatttttcgcgaaattaactttcgcgaatttcttgtttaat
ttcttacctggcataaactttcgcgaaaaaatgccaaaaacgcgaaaaac
gcgtttctgcccgcgaaagtttctgcccttaattTAATGACCGCTTTATT
TTACTTAGTAAGATCAGATTTTGGGAAGAGGCAGCAATGTTGTTGTTGCA
GTGGAGTGTCTTTAACtcgaatctccataactcgaacaagttttctcgtc
catTCAGTTAAAAATCCCTTCTAACTCAAAGAAAGAGTTTGGGAAGATTT
GTTGTATAAAAAGTTGTTTAATCCTAAttcattttcaggaaaaaagcaTA
TTGCTCTTTTGTCTAAGTTTTTAACTTTACAACTTTtattttcttgtcat
ttttcagAAGGGGATGCTCCGCTCAGTTCACGTTTAGCTGCGCTTCGTAT
GAAATTGGAAGAGAAACGACGACagtttgaagaagaaaagaaaaccaAAC
TGAAAGAATGGAACGAGGTTAGTATTTTGTAGAtcaagtctttttttttt
gtgaatggTTCCTCCggttaaatttttgaaatttttgaaagattcacTTG
TCTAGTACGAAACCCTTTTTACCTTGCTTTTGGACAACTCACTCTTCAAT
TTGATCACCGTAGAActttaaacttaaaaataaatcgagctaaaatttta
agCTATCCGAAAACttgtttgttttctttcaaTGAAGATTGTCATCCtgg
atggcatgaaactttgagtatgaaattaacttaaatcgTATTCTATACTT
AAACTAGTGACTTTCTCACTCAAAATGAACACCTTTTCTTTGTAGGAGCG
AGCGCAAGCCTTGCAGAGCGCTTTCTTTGTTTCCAtggatgaaaaagaaa
acaaagaccCCGTCAATGCGGACGCTTCAGGAACCACTACACGACAAGAA
AGTACACATGGTAGGATTTTTCTGTCCACTCAGGTCCACCTGAAAAAATC
TAATTACTAATCTTCATGAAACAGGCAACCTTCGTGACTCTAGGTTTTTT
GGAAGTCAGTTATTTTCATTATCTGATAATCAATCAAGCAAACAATAGTT
ACCACAATTTTTTCTTGGGTTAATTAAAGTGCATCAATATCGTAAAATAT
CGTCATTATGCTTTCTTGGTTCACAACTTAgcttataaaaccaaaataca
GTAACATTATAGAgactttattaaaaagaattgaaaaactCGGAAGAGTC
CTTAGCAtaacttcttttctttttccttacTTCAAATTCACTTTCTTTTC
TTCATCCACAACCAGGTAAGAAGTCTGACATCACTCCTCAAGACTACATC
CGTCAGAAACAATTAGAAAAGCAAAATTCACCCGGACAACAAACTGAAAA
GAAATCCTGGTTCTTTGATATCAATGGCCAACAGCAGGACGTAGGAGAGA
TAAAACACACTCCAAATATCAGCGGTGAAGGGAACGCCCCAACCGCCCCT
AACCCACCTTTATCCTCTACAATCCCTGATGAGCAACCATCTATTCAATC
AACAGACCAGAAAGTAGCCTCTATCCGTACTTCATATCAAGGAGTAGAGC
CTAGTTTCTCACAAGTAAACCAATCTGCAGCACACATTAACCGGTCATCT
TACAATGGTACAGAGGCTAACTTCAAGCTAGAAAGTAAGCCTACGCATCC
GACCAATCGAGCTTCATATCATGGACCAGAGTCTAGTTATCACAAAGAAA
CACAAAATCTAACCAACGCCAACAGATCCTCCTACACTGAAGGAATGACA
CCAACTTTATCAGCACTTCAACGACTACAACAGACTACCAATGAACTTAG
TACCCATATCTCTCAAAATAGTTCATCAGCGTCAGAGCAAAGACAACAAA
CAGAACAGGTAGGACTAAAGATTTAGTATTAATCTCTTTCGGCTGCCGGT
GGGATTGAACACTATAATTTCTGATTTTCCATAGTACCGTATGTTCTTTT
CGGTATTTGATCTGTTTTCATAATACAGTTGAAATTGTCTAATTCGAAAT
TCAAGGGGAATTTGATTTCAATCGAATGAGGGAGcgcatcgaatagtaga
gcgtcgttcaTGAGAGTTTcatgttgacggggactttaaatttcatcgaa
taatggaACGTATttaatagtagaacgtcgaattagagagcgtcaactat
atATGGAAATCTCAAACTTCATTGTTGTAGTAATCTAGTGATCAACGTGA
AATCGAAGTGAATTTCAACTCCCTCATGAAAAGTAGAAAGAATTTGTTTT
TCGGTTTTATAGCTTTTTACCGGTTTCATTGTCCTTGCATTTTTGAGTTG
ATTTATAACTCTGTTTTGCTTATAGTCTTACCAAACCTGATTCTACTTTG
TAACACAGTTCCATTTAATTTGAACAAACACAGTTTGCCATATCTGAACT
GTATTATAGAAATCTTTCTCTTTCCTTTTTCTCCTTTACAAGACAGCTCT
GTGTGACCGCATAATCTTCTGCGTGTGTAAATTGTCGATTtgacaaagtt
ttaaaatgtatagtTGCTATATAGTTAACAATTATTTGAGTCGTGTCTGA
ATCGAAAATGTGATAGAGAAAATATAGATGGAGTGTTTCTTTCGTATTTT
CTCTGCAATCACCAGCCGGAATTGAGAAAGTCTGATGTAATTCTGTTAAT
TGGTTGATGATGTTCATTACTTCCTCTCTCGTTGAATGATGATTGATGTA
ACTTCGTTTGGTTCAGTATCAAAATTTCTATCATTGTAATTGAAACTTtg
ttgaaacttttcaaaatttgttggTTAGTGAAAACGATGagtatttcgat
ttttgaagcTTGTTTACGTTCACCAAATGGTAATCTGGCCTTCTTCGTAG
ACTCGGTAAGCTTACGTTGTGATATGTTGTCTGTGCGAGAGAAATTTGTC
AACACTATAAAGGTTGATTGTGTGATTCTCCAATTCTCACTTTTTCATCT
CATAATATTGACTAGTTTTTTTTGCGACGGAAATTCAACGTTATCATACT
ACGTTTAAAAGCTTAATATAAGATGTCATACATTCTTAGTGTAATCATAA
TGTTTTTACTGTTCCTGTATTTAAGGCTTGATCTGTTATAATAGAGCTGA
GTGCAGTGAGAAAAAATTGAGTTTGTTATCAAAATATAAGACAAGAGATT
CCAGATTAAACTTTTGCTTGCTtgaaaatattcgattaaaaatGTTGCAG
TTCAGAGAATCTTACAATTCTTTATTCGTTTTGGGTCGTTTATAGTTATA
GTTCTATAGTTATAGTTAAGTTTTAGCAGCTTTTTTGAGAGGCATTTTAA
CGTCGTGGTTTTATTTACGAATAAACTCtctaactttgaaaaattgttat
ttccgatttttgaatttaattccTTGAACGAAGTTTCTTTTCCTATCGAC
CAATCTGCTAAATTAGTATCTACTCCTTTTTAATCTCTTTTCTATCTTGA
TCTTAGAAGCCTGGTCTGAAAGTCTTAACAACTACAGCTTATTGAGTACT
CCCAAGTTGATTGATTTCATAATTATGGTAGAAACTGAAATTTGCGCACT
CTTGAGATGAATTTTCGTCTCCTCTCAGAAATACTTTGGAGGAGATTAAA
CTCGAAGTCGCTCTCCCTCGTGTAGGCCTCGTGTTCTCCATTTTCTGTGG
TTGCTATTGGAttatgtgtattttttaattatgatTTTATGATTAAGATT
AATTACCTCTGTTTTTTGTTGTATTGCTAGCATATGATTTGAATGCTGTG
TTGTATTTTCTTTTCGAATAAACTAAATCATAGATTATTTTACTGTGAAT
CTCTCGCTAAAATCAATCCTTCTTTATCTGGAGCTACTTCTTAGTAACTG
AAAAATGCAAAACCTCTGCGTAAAATACTTTCTACAATATATATGAATCT
GTACAATTTTGGGTTaaaggtttttattttcacataagtgttcccgtttc
atatcagacacatacttcatatcaggacagtgtctccctattgttatatt
gtgctgatgttttttaaaaaaaatgtttttcttttcctctttttaaccaa
tcttgctccacatccatgtcaattcaatgcgaaaaagcttgtaaattaga
attgatgagtaagcaaacgatatcactcttatttaaaaacaaaaccttta
aagctcAAAGAGTCAATCTTCTAATACCACATCTCATAATCATATTTCGT
AAATAAATTCAAGCAACCTAAAGCCTGGGAAGATCTATATGCGGTGTAGG
CTACTTCTATACAAACTCCAAAGTATTGataattttttactttattttag
aACTCTAATCAAAAGATGGATACTATCGAGCCAACCACAACTTCAGCATC
AACAACAATGGAACCACCAAATATACCATCACAAGATGAAACGCCATCTG
ATATACAAAACACTCACATCTCAAATATACCAGAATCTCAACCCTTGATT
CAACAAGAACCCAAAACAGAAGATCCTGTAATTGAACAATCTCAAAACGA
AATCCCTCTACCGCAAAGTGAGATCATGGTTATGCCTCAACAGACTGAAA
CAGAGACCCTGAATGTGGACCCAGTACGGCCTATACCATTTTTAAAAGAG
CCAGTATCAAGTGAAATTGTCAATGATATTGCCAATGACGTGGGCAATCT
TCAGATCCAAGATGCCATTAATGAAATTGCAAGTGAACAACCTGAACAAT
CGAGTCAACAAGTTGAACAAGGAACTGGAGAGGAGGAACATGGGTCATCG
AGCCCAACCAAGAATTCAGCTCTTGTGTTCACTTTTGGTGGCGAAGAAGA
GACAGAGAGCGCGGTAAGAATCTTGAATAACTATATAATAAACATTTTGA
ATATTAAGCAGCAGGGTCCTGCTGAAATTGAAAACGGTCACTCTGGTTCA
CTCTGGTTCACTGACTCTTCAAGATTggtgttttttgaaattataatcCC
ACTACTCAATGtgggtgaaaaattttaaacggcaaatttcattgaattat
aAATTCACCCAATCGATTGGTGCTACTATTGGGGGGtttacttttacggt
gtgacgggattggcccttttttagtacggtattacgggatttgacgaaaa
aaaaaacgggaaagcggtattttaaaatcagacggtgacggtatttggcc
ttattttttgtcattttataacggtatttgaacctgtacaaaccggtgtg
acggtgttattatttttcaattttcgggattccgggaaaCAGCAAatatt
ttgacgggaaaacggtatttcgaacccctactaCAAACCCCCTCCTATTG
GGATACCACtctcaaaaaactccgatcaaagatggcggatatagcttggt
tcaGGGTATATAAAGGAGTTGTCTCTTGATACAGTGTTGTTGATGTATCC
GGTGTTGTTTATACCTCATTGGAAAGGTAGACTTTTGAGATGACACCATC
TCAAGTAAGTGTCTCACTCAAATATGAAATTCTTACTTGAATCTTTTTCA
GATCCAATATAATATTTGATGCTTTTATTATGCTAACTCTCAGTCATCCT
AGTTTTCCAACTGTTTTTTGATAGCATAAAATGTTAAACTTTTCATGCAA
TCTAAATAATTGATTATGTGATGTTATGCTTTTAAGTCTCTTGAAAGCCG
AACGAAGGTCGTAGGTATAGTCTATACACATTGCACTCCGTATTATCACA
TGTAGGGTGCGCCAAAATAAGCATACAGACTTGTCAAGATATTGTATACG
CTTATGGATAAGAATTTTCACAATTTCCACTGATATAGATGAATTTTATG
TAGGTCAAAATATTCAAGTCTAAAATTTATCTTTTGATTTTGTCTGAgtc
gattttaaaattttataaaccAAAATCTAAATTAGGCTTTCTCCTGTGCA
ATAAAAGAAATCaacataaagtttttatcctTAAACTCACAATATCTTGA
TAAATTTGTATATACTTATTTTTTACGCATTCGTATATTACTATATTACT
ATACTACATTCTAATCTCTGGTTCATTTTAAGGGGATAACACCAGAGCAG
ATCAAGAAACGCGAACGATTTCTACAGAAACGTCAGAAACAGATAGaaga
gaaaaaattgaaacgaGAAGCAGAGCTAGAAAAGAAACGAAAGTAAgttg
gaaatatatttttgagtgAAAGGTATGGTTTTTAGGGCCTGTGAAAAATA
TCTGCTTTGCTTAGTAAAActgtttatcaaaaaaacgACAGCCATTTTGA
ACGAGCGAGTCTTGGGTTTGAATTCCATAAAGTAGCTTTGGAATAGCGTT
AATTCCCCCGTGTTTTCCAGTATTCATGTttttatgttgttgttttttcg
tAAAAAAACGTCGTATGGAAATTTACTTGTGCAATTAACAAAGANGGATA
TTTTTGAGTGAAAAGTACCCATTCTAGTACCCATTTAAAGATGTTAgcaa
tttttttcaagatttaaagtctGTCCAAAATCATCTggataatatttttt
tacactcatttttattttgttgttatttttactttattggaaagaaaaaa
tttttatttaagacGTTAACGATTTTTGATTATAAAAATGGACGGACTTA
ACTTAAGCaagatttcattattttttactACACTAAAATTTGCCTGTTTT
AATTTTACAGAAAAGACGAAGAAGCCCTTCAAGAAAAATTACGAATGGAT
GAGGAAAAAGAACGCGTCAAAAAGGAGAAAATTCGTCAGCGCGCTCAATC
GGCAGAAAATCACGAGCGGGCGGCTCATCACCAGGACAATCAACGACAAT
ATTCGGCGTCCGCTTTCACTGTTAGTATGAATTCAACGAGTTCAAGTCCC
TCACATCAGCTACGGTACGTTTTTTGATATTCTATTTATAtgttgaattt
taatttttatcacTACAGTATTCAATATTGACTCTCCTGGtatgtacagt
tgacgctctctaattcgatcttcaagggaaatcagattttcatcgaataa
gggagcgtcgtttatgagggtttcttgttgacggggactttaaatttcat
cgaataaggggtcctatcgaatagtagaccgtcgaattagagagcgtcaa
ctggtATGTCATTCCCCGATTTAAGGTATCCATGACGTAATGCATTCTAT
AAAAACACCCCGGTTTTTTGCCAGTagtgacaaaatgacaaaaaaaaatt
tttaatctaCTGGCAGAAACTGGCGTGTTCCCGTAAAAAAGCATTATGTT
ATAAATATCATCAATGTGGGCAGTGTTTGACCCCATGGAGTAGTTTCATG
GAATTTGAACAAAATCATGTTAAACTATCACGTATAAAGAGCCATTGAAA
ATCAACTAAGTCAACTCTAGATTAATTCAAATGGAACTTTTTCTTTCAGA
CGTCCTCCAAGTAGCGAACATTTACGTCGTTTGCAAAGTGGAAGTCCGTC
CCATCACGCAACCAACGGTGATGGGACGCCGGACGAATCGAAATACTCGG
AATACACGGGCCCTTCCGCATACCAAAAACCGTCCGGGAAGTCGAATCGT
AAAATTATCCAGAATGCGATAACATATTGTTGCTTATCGGGCGGTGTTAA
TCGTGATGCCAAAGATAGATGTCTGGAGGTATGAATTCCTTTTGTTTGTT
TCAGACGGATTTCCCTCTCAGTGAAGTCTATAAAAAGGCTTTTCCGTCCC
CAAACTCGGCATGATTCACAAACATTTCAAGAACATatgctaatttgctg
tgtaaaatccataTGCTTTGACCGCTGTTATTTATTCATTCGTCTATTTC
AATGGAGCGATATGGCGATgcggtcaaaggcgtcagcgttaCAAATCAGG
TGTTTGCAATTCGAATCCCCGTctcttccaatgttccgttcagttcatag
attgTTGAACCAGCTGGCTGTGGGCTccgtgaaaacaaacaaaagactGT
CTAATAATCCTAGTTAGTGGGTATCCGCTTCAAAATATCGACTTTATCAT
AACCTAACAATTCTTGAGCCctgaaatataaataaatatgtATTTCAATT
TTCCTTTGTAGGCGATTGAGAAGAGTGAAGCGCACCATTTCGTTGTCCTG
TTTCGAGATCCGATGAAATTTCGCGGTGTTTACGAATATTACCCTGAAAA
TGATTTGGTATGTGATTATATTGCGTATAAGTTTTTATTACAGTTTTACA
TTCATTAACACCTTTAAATTTCGTCATTTGGATGACTAAACTTAATTGCC
GTGGaaatatttataattttataaccgggtaaaagacgggggtaaaatgt
GAAAATGGAAAGTGAGTTGATTCACTCAGAAACTTGAATTgtaggatttt
ttattcaaacGTCTGGTTGATGGTTGAGAAGGCTGAGAAACAAAAATTCC
ACATAAAGGTTGAATTCTGTGTAATATTTAatgaaactttcatttttagg
tgACGAAAATTTATGGAACCGGACCAAAGTCAATCACGTCAAAGATGACT
GAGAAATTCTTTAGGTATgatatttttaagatttctttTGGTTTTCTGGA
GATTTTGAGGGGGTTTTCCATTTAAACAAAGGAATGGGAAAAACTTAGTC
ACTGACCTaaaaattttgtcacttttgCTCGACTAATTGTTACCCTTCAA
GATATTTTAGCGTTTGTTATACTACacgctttaaaaaaaaaagaatacac
TCTATAAGAATacccatgatgaaaatggccaaaaagaatatgctaagaat
atcaacatcatggaattttgctactcaagtcAAGAATGCTATTCTTAgac
cattttcaattataaattgtcaattacccccaagtaaggctcactccttt
cacaaaaataccattttatgcttgagtcgtatgtactaaatattaaatct
agtctaaattaggatcctaacctaagaatattttaggatgattttccaaa
aaaaaattaagaatatcaatgatgaaatggatttacaccattcttataaa
gaaaagcgtatGTTATACTATCTGTGATTTTAACCATTTTCAttcaatca
attttcttttcatttcacCAGGTATAACAGCGGTGGGAAAGCCTTCAACG
GAATGTTGATGAAAGACCTTTCCATACAATGTGATGGATTCACCATCAAG
AAAGAACTATGGGAGAAAAAACCAACGGGCGGAACGCCCTCTAAAACACC
ATTACGGAAAAAAGTTCGTTGACTGAATCTGAGCAggaatgttgttgttg
ttattataaTAAGTCTTTAAAATTGAACCAACTGCGAACGTCAACTTGGG
TCTTCCCAATAAaagtgcaactttgataagtacTGTATTGAACTTTCGGA
GAATTGAACCAATAAATGaattctttatttatacaaaggTATAAACCCCT
CCTCTACAACATTTTAACACAAAGAGTATCCCAAAGAGTTCATCTGACGA
AACTGTGTTGCATTTTTCTCGTTTTTGATGTTCATTTTTTTGTCGTTGTC
aaatacttttaattttttttgtttgttttaactttgatattttgtcattt
tatacATATCACTACCAACATTTTAATATTTAGGTTTAccgaaaaaattg
acaaaaaatatatattggaTGATAGATAGTATTTATAAAGTGAAAAAGAG
AAGACATtgtaaataatgaaaaatgtaaatatttcttAGATATTTTATGG
TATTAGTAATATATCTTTATGAAAAATCAAGGTATTTCTAAAACACGAAA
ATGTTTACTTCTTACAAACCCGCTTGTTTCCTGTCTAAGATGAGTCGCAC
caaccattgagtttgaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010146XLOC_010146Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018090-exon-sc0000287-1491911889:173186..173351TCONS_00018090-exon-sc0000287-1491911889:173186..173351Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:173186..173351TCONS_00018090-exon-sc0000287-1510915933:173186..173351Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:173186..173351TCONS_00018090-exon-sc0000287-1575043694:173186..173351Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:173640..175801TCONS_00018090-exon-sc0000287-1491911889:173640..175801Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:173640..175801TCONS_00018090-exon-sc0000287-1510915933:173640..175801Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:173640..175801TCONS_00018090-exon-sc0000287-1575043694:173640..175801Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:176543..176652TCONS_00018090-exon-sc0000287-1491911889:176543..176652Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:176543..176652TCONS_00018090-exon-sc0000287-1510915933:176543..176652Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:176543..176652TCONS_00018090-exon-sc0000287-1575043694:176543..176652Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:176981..177095TCONS_00018090-exon-sc0000287-1491911889:176981..177095Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:176981..177095TCONS_00018090-exon-sc0000287-1510915933:176981..177095Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:176981..177095TCONS_00018090-exon-sc0000287-1575043694:176981..177095Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:177451..178043TCONS_00018090-exon-sc0000287-1491911889:177451..178043Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:177451..178043TCONS_00018090-exon-sc0000287-1510915933:177451..178043Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:177451..178043TCONS_00018090-exon-sc0000287-1575043694:177451..178043Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:180486..180998TCONS_00018090-exon-sc0000287-1491911889:180486..180998Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:180486..180998TCONS_00018090-exon-sc0000287-1510915933:180486..180998Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:180486..180998TCONS_00018090-exon-sc0000287-1575043694:180486..180998Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:182218..182327TCONS_00018090-exon-sc0000287-1491911889:182218..182327Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:182218..182327TCONS_00018090-exon-sc0000287-1510915933:182218..182327Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:182218..182327TCONS_00018090-exon-sc0000287-1575043694:182218..182327Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:182846..183049TCONS_00018090-exon-sc0000287-1491911889:182846..183049Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:182846..183049TCONS_00018090-exon-sc0000287-1510915933:182846..183049Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:182846..183049TCONS_00018090-exon-sc0000287-1575043694:182846..183049Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:183585..183813TCONS_00018090-exon-sc0000287-1491911889:183585..183813Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:183585..183813TCONS_00018090-exon-sc0000287-1510915933:183585..183813Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:183585..183813TCONS_00018090-exon-sc0000287-1575043694:183585..183813Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:184247..184342TCONS_00018090-exon-sc0000287-1491911889:184247..184342Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:184247..184342TCONS_00018090-exon-sc0000287-1510915933:184247..184342Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:184247..184342TCONS_00018090-exon-sc0000287-1575043694:184247..184342Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:184635..184699TCONS_00018090-exon-sc0000287-1491911889:184635..184699Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:184635..184699TCONS_00018090-exon-sc0000287-1510915933:184635..184699Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:184635..184699TCONS_00018090-exon-sc0000287-1575043694:184635..184699Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1491911889:185257..186003TCONS_00018090-exon-sc0000287-1491911889:185257..186003Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1510915933:185257..186003TCONS_00018090-exon-sc0000287-1510915933:185257..186003Clytia hemisphaericaexon
TCONS_00018090-exon-sc0000287-1575043694:185257..186003TCONS_00018090-exon-sc0000287-1575043694:185257..186003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000287supercontigsc0000287:173186..186003 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.00777064	0.13319	0.271449	7.10446	6.53184	2.76802	3.29776	2.58328	5.6546	1.00492	1.44501	1.08409	1.68484	1.37553	1.70652	0.895841	2.5201	6.86869	3.25023	2.21381	1.31348	2.70919	2.01035	2.43911	0.14431	1.12179	1.1018	2.61738	1.17713
Blast
[Close]
BLAST of TCONS_00018090 vs. Swiss-Prot (Human)
Match: CAMP1 (Calmodulin-regulated spectrin-associated protein 1 OS=Homo sapiens GN=CAMSAP1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 3.163e-34
Identity = 66/144 (45.83%), Postives = 95/144 (65.97%), Query Frame = 3 
Query: 4074 EYTGPSAYQKPSGKSNRKIIQNAITYCCLSGGVNRDAKDRCLEAIEKSEAHHFVVLFRDP-MKFRGVYEYYPENDLVTKIYGTGPKSITSKMTEKFFRYNSGGKAFNGMLMKDLSIQCDGFTIKKELWEKKPTGGTPSKTPLRK 4502
            EYTGP  +++PS KSN+ II NAI++CCL+G VN   K+  LE +EK +A+H+++LFRD   +FR +Y YYP+ + + K+ GTGPK+IT KM +K ++Y+S  K FN +  K +S+  D  TI   LW+ K     P K   RK
Sbjct: 1460 EYTGPKLFKEPSSKSNKPIIHNAISHCCLAGKVNEPHKNSILEELEKCDANHYIILFRDAGCQFRALYCYYPDTEEIYKLTGTGPKNITKKMIDKLYKYSSDRKQFNLIPAKTMSVSVDALTIHNHLWQPK-RPAVPKKAQTRK 1602
The following BLAST results are available for this feature:
BLAST of TCONS_00018090 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAMP13.163e-3445.83Calmodulin-regulated spectrin-associated protein 1... [more]
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