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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018087 ID=TCONS_00018087|Name=TCONS_00018087|organism=Clytia hemisphaerica|type=transcript|length=573bp
ATCAATCGCAAAACAAAAggaagaaatttagaaataccaGCACCTGGAAG
ATAAGAAAAATGAAGACAATCACTTTCGTTGTACTTCTGCCATTGTTGAC
GAATGAAGCTTTTGGGTTCCTGAAGAATGGTCCCTGGAATTGTCGTAATT
TAGCTTGCTTTTTGAAGGAAGGCCAAacaattcacagcaaaaatctTAAA
CACTGGGATGAGAAGACTTGTGGATCCTTCAGTGGGCTCTCATGTTCGGC
TGCTAACGACCGCGTCGCAAGTAAGTGCCAATCGGATTTGAACAATGCTG
GTCTTCAACTCCACATTTGCAATCAAAAAGCAGCAAGTATTCCAACATAT
CCGAACAAGTTGACCGTCTGGGTTACCAAGATAGGGAAGGCTCATTGCAT
GTCAAATAACGCCAACAATTTTTGGATGGATAAGGATCATAATGGCGTTC
CAAAACGACGCGCCATTTGCTGCACAAAATTCCAACCAATTCCATGGCTA
CCAGCCAACATTTACAACCTGCCATGCTAAGGATTTTTTGCTTTGTACTT
GTATGAAATTGATTGAAATACAT Run BLAST on NCBI protein sequence of TCONS_00018087-protein >TCONS_00018087-protein ID=TCONS_00018087-protein|Name=TCONS_00018087-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
QSQNKRKKFRNTSTWKIRKMKTITFVVLLPLLTNEAFGFLKNGPWNCRNL
ACFLKEGQTIHSKNLKHWDEKTCGSFSGLSCSAANDRVASKCQSDLNNAG
LQLHICNQKAASIPTYPNKLTVWVTKIGKAHCMSNNANNFWMDKDHNGVP
KRRAICCTKFQPIPWLPANIYNLPC Run BLAST on NCBI transcript from alignment at sc0000287:108704..109731+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018087 ID=TCONS_00018087|Name=TCONS_00018087|organism=Clytia hemisphaerica|type=transcript|length=1028bp|location=Sequence derived from alignment at sc0000287:108704..109731+ (Clytia hemisphaerica)
ATCAATCGCAAAACAAAAggaagaaatttagaaataccaGCACCTGGAAG
ATAAGGTAACATTAAATATTGTATTATCTGACTTACTGACTtactgcctc
acagccccggtggaacattCCTCCcgatggggataaaaattcctattgaa
atcccgatGGGGATAGCAATTCTATTGTAAAATAATCCAGAAACGATGgg
tttgaagtgcaatttttaaacatgaatTTCGAGTCAGGATGAAAagaagt
caatttctcagttgGGCTAAAAATCCccggtattttcccaccggggacat
tTGTCAGTGGAgttggggtcccagcgggtccgtgacacaggggtgttttc
atGTTAAAACAATATAGAATCATTTATAAATTCAATGTTACCTAAAGATC
acttttgaattcattttgtCTGTTTTCTAATATTCGTGGATTTCTTACCA
AGACTACCAAATATTTACCAAAAAAGAATCTCAGAGTATTCTCATATTTT
CTACTTTCAGAAAAATGAAGACAATCACTTTCGTTGTACTTCTGCCATTG
TTGACGAATGAAGCTTTTGGGTTCCTGAAGAATGGTCCCTGGAATTGTCG
TAATTTAGCTTGCTTTTTGAAGGAAGGCCAAacaattcacagcaaaaatc
tTAAACACTGGGATGAGAAGACTTGTGGATCCTTCAGTGGGCTCTCATGT
TCGGCTGCTAACGACCGCGTCGCAAGTAAGTGCCAATCGGATTTGAACAA
TGCTGGTCTTCAACTCCACATTTGCAATCAAAAAGCAGCAAGTATTCCAA
CATATCCGAACAAGTTGACCGTCTGGGTTACCAAGATAGGGAAGGCTCAT
TGCATGTCAAATAACGCCAACAATTTTTGGATGGATAAGGATCATAATGG
CGTTCCAAAACGACGCGCCATTTGCTGCACAAAATTCCAACCAATTCCAT
GGCTACCAGCCAACATTTACAACCTGCCATGCTAAGGATTTTTTGCTTTG
TACTTGTATGAAATTGATTGAAATACAT Coding sequence (CDS) from alignment at sc0000287:108704..109731+ >TCONS_00018087 ID=TCONS_00018087|Name=TCONS_00018087|organism=Clytia hemisphaerica|type=CDS|length=1056bp|location=Sequence derived from alignment at sc0000287:108704..109731+ (Clytia hemisphaerica)
CAATCGCAAAACAAAAggaagaaatttagaaataccaGCACCTGGAAGAT
AAGAAAAATGAAGACAATCACTTTCGTTGTACTTCTGCCATTGTTGACGA
ATGAAGCTTTTGGGTTCCTGAAGAATGGTCCCTGGAATTGTCGTAATTTA
GCTTGCTTTTTGAAGGAAGGCCAAacaattcacagcaaaaatctTAAACA
CTGGGATGAGAAGACTTGTGGATCCTTCAGTGGGCTCTCATGTTCGGCTG
CTAACGACCGCGTCGCAAGTAAGTGCCAATCGGATTTGAACAATGCTGGT
CTTCAACTCCACATTTGCAATCAAAAAGCAGCAAGTATTCCAACATATCC
GAACAAGTTGACCGTCTGGGTTACCAAGATAGGGAAGGCTCATTGCATGT
CAAATAACGCCAACAATTTTTGGATGGATAAGGATCATAATGGCGTTCCA
AAACGACGCGCCATTTGCTGCACAAAATTCCAACCAATTCCATGGCTACC
AGCCAACATTTACAACCTGCCATGCTAACAATCGCAAAACAAAAggaaga
aatttagaaataccaGCACCTGGAAGATAAGAAAAATGAAGACAATCACT
TTCGTTGTACTTCTGCCATTGTTGACGAATGAAGCTTTTGGGTTCCTGAA
GAATGGTCCCTGGAATTGTCGTAATTTAGCTTGCTTTTTGAAGGAAGGCC
AAacaattcacagcaaaaatctTAAACACTGGGATGAGAAGACTTGTGGA
TCCTTCAGTGGGCTCTCATGTTCGGCTGCTAACGACCGCGTCGCAAGTAA
GTGCCAATCGGATTTGAACAATGCTGGTCTTCAACTCCACATTTGCAATC
AAAAAGCAGCAAGTATTCCAACATATCCGAACAAGTTGACCGTCTGGGTT
ACCAAGATAGGGAAGGCTCATTGCATGTCAAATAACGCCAACAATTTTTG
GATGGATAAGGATCATAATGGCGTTCCAAAACGACGCGCCATTTGCTGCA
CAAAATTCCAACCAATTCCATGGCTACCAGCCAACATTTACAACCTGCCA
TGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018087-exon-sc0000287-1491911889:108704..108758 | TCONS_00018087-exon-sc0000287-1491911889:108704..108758 | Clytia hemisphaerica | exon |
| TCONS_00018087-exon-sc0000287-1510915933:108704..108758 | TCONS_00018087-exon-sc0000287-1510915933:108704..108758 | Clytia hemisphaerica | exon |
| TCONS_00018087-exon-sc0000287-1575043694:108704..108758 | TCONS_00018087-exon-sc0000287-1575043694:108704..108758 | Clytia hemisphaerica | exon |
| TCONS_00018087-exon-sc0000287-1491911889:109214..109731 | TCONS_00018087-exon-sc0000287-1491911889:109214..109731 | Clytia hemisphaerica | exon |
| TCONS_00018087-exon-sc0000287-1510915933:109214..109731 | TCONS_00018087-exon-sc0000287-1510915933:109214..109731 | Clytia hemisphaerica | exon |
| TCONS_00018087-exon-sc0000287-1575043694:109214..109731 | TCONS_00018087-exon-sc0000287-1575043694:109214..109731 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000287 | supercontig | sc0000287:108704..109731 + |
Blast
The following BLAST results are available for this feature:
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