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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018059 ID=TCONS_00018059|Name=TCONS_00018059|organism=Clytia hemisphaerica|type=transcript|length=1130bp
GTACTTGCCCTGGCGGAAGCAATGGACAGTGTGGAATCTCCAAAGTCTCA
CAAAGTCGTGTTGTCAATGGTGTTGAAGCCAAACCTGGAGCTTGGCCATG
GATCGTATCTATTCAAAACGGATATATTGCTTCCCATTTCTGCGGTGGCA
CTATTTTGACACCAAACTGGGTTTTGACTGCAAGCCATTGTATCAAAGGA
AGACAAAACGACCCTGGGTATTTCAGAATGGTTGCTGGTGTACACGACCA
ATGGAGACCTGAAGGTACTCAACAGAATGTTGGAGCAAAACGAATCATTA
TGCACCCAAACTACGATCGTCAAACCGCTAATGCTGATGTTGCTTTGATT
GAATTATCAACTCCATTCAGATTGAATGACCGTGTTGTCAAAGCTTGCAT
GCCACAACAAGGAGTCTATCCAGCTGCTGGAAATGGAAGCAAATGTTTCA
TTGCTGGATGgggaaaaacaagaaattaTCCACCACAAGATGCAAGATAT
CTCCAACAAGCTGAACTTCCAGTTGTCCAGTCTCCACACAAAGGTTGTCA
TTACAACGAAGAAGTTGTTTGCGTGGGTAAAGGATTTGATAATCGACCTN
CAGGCACTGGCGCTCCACCAAAGCTTCAACAAGCTAAGCTTCCAGTTGTT
GGTACGCCACACAGAGGTTGCCATAACAACAAAGAAGTCGTTTGCGTTGG
TCTTGGATTCGGAAAACAATCTGACGGTAAACAACATCCAAACGCATGCC
GTGGTGATTCTGGTGGCCCATTGATGTGTCAACAATCAAACGGATCATGG
ACTGTTGAAGGTGTTGCTAGTTATGTTTACACTTATTGTAAATACTACAC
AGCTTACGCTCCAGTCAACAAATACTTGCCTTGGATCAAGCAATACGTTC
GTGATttgtaaattgtgaaaaacaaagAGATGTATCATATCAGTCTTtaa
gtaaaatatattttaaagagATGTCTCAACTAATGAATTTTTAAAACCTT
CTCATTGGTTATTCTGTTTCAGGGGCATTAGGATTTTTCGTCGATCTGGG
AGATTTGGTTTGGTCGAATATATATTTCTGATAGAAGATCTTTGAAGGTA
GAATTGGTTGGCTCTTTGTTTTGATTCCGG Run BLAST on NCBI transcript from alignment at sc0000284:357041..361934+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018059 ID=TCONS_00018059|Name=TCONS_00018059|organism=Clytia hemisphaerica|type=transcript|length=4894bp|location=Sequence derived from alignment at sc0000284:357041..361934+ (Clytia hemisphaerica)
GTACTTGCCCTGGCGGAAGCAATGGACAGTGTGGAATCTCCAAAGTCTCA
CAAAGTCGTGTTGTCAATGGTGTTGAAGCCAAACCTGGAGCTTGGCCATG
GATCGTATCTATTCAAAACGGATATATTGCTTCCCATTTCTGCGGTGGCA
CTATTTTGACACCAAACTGGGTAAATTTTCTAGCCTCACTTTTACAACAT
ACCTTTCCGACCTATTACTTATATCGATATAAGAATATATATGATTTCCA
CTTTCCAAGTAAGGATTCAGAGTCACCGGGTTGCCATATACTTCATACAT
ACGAACGGATGAGTCCTAATAAGAAACCTAATGGCCACCAAAGTACAATG
ACAAGTTAGGATGTTAGTTGAAAACTAATTCTCTTTATGTATGTGACATA
GGTTTGCTCAGGTGAAATTATCCTCCAAGATGGACGTCGAGTACTCACAC
ACAGTGCTGTAATCTCGGACCGGAAGAAAAATCTTTCAACGAATTTAGTT
TCAGATTGGAGCTGTCACACCTAGTTTTCTCtatatatttgaattttttt
caagacaGCATAACAAGACTTTCTCATTATCTTAAGGTTTTGACTGCAAG
CCATTGTATCAAAGGAAGACAAAACGACCCTGGGTATTTCAGAATGGTTG
CTGGTGTACACGACCAATGGAGACCTGAAGGTACTCAACAGAATGTTGGA
GCAAAACGAATCATTATGCACCCAAACTACGATCGTCAAACCGCTAATGC
TGATGTTGCTTTGATTGAATTATCAACTCCATTCAGATTGAATGACCGTG
TTGTCAAAGCTTGCATGCCACAACAAGGAGTCTATCCAGCTGCTGGAAAT
GGAAGCAAATGTTTCATTGCTGGTAAGTACATCGCTTGGAACATTTCAAA
GACATTTGCACGAGACAAGtcaatttgattattttaagtGTTTATTTATA
AAAGCTCAATTCTAACATAGATTGTATAAGAAAGAATGGTCTGGAAGATC
AttgatttaaaagattttgttagctttttccttgGTTCAATTAATCTTGg
ttaaaaatcgatttgctcagtttttgatcacgttaccaaactctcctctt
gggattggtttgtatatgtaatcacatgataacgagtgcaattcgaatat
aattgcacgagtgatttctttgttattaattttccgagtccgaaaggacg
aggaaaattcgaaacaaaaaaatcacgagtgcaattttcgaattgtacga
gttattatgtgattacgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNatgggcctatttgtggtcaaaaaggt
gtttaattttgcataaattaatgcagattgtggggaaattccctgttttc
catcagttttttaccacaaataggccaatagATTTTGATCTAGAgcagtt
gggactttggtgtaatacacttttttgctcagtttgaagagctctatcat
gtgatataggtctttttttaatttgaagaccccccaaaaatcatNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNtggaaacgcaaaaaatcgccatttactcgttacttgcacga
taatatcgtggaaactttttgattttgtaatctacacatactaattcgcg
agtttccgttgtttcttttggaatctaaaagatgtatcacgaaatgaaac
gtttttcgacctcagccgcgcgactacaATGGCTGttactactttttccc
agttaggaaagtaaattacagaaattacacttagagttttatatttttct
cttctctttatgtctttcttttNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAACGaataattgctctc
tacaggatgcaattaacgattaattgctctctttgagggcgtgccaaata
agaaaaaataacccatcgtgcgattaaagATTTAATcgcatgatcaaaaa
gtgagcataACAATATAATCTCTCAaagcaagttcaagtaagaaacaatg
aaaagaaACATAAGATTTCCAGACCGGGTTTTTTTATTCGGACTATGAGT
CATTTGAAAGCATATCTTATACTATGATAGAAAATCAGGATTCAGTGATT
ACAAAATTACCCGTAGCAATCATTCATGAAAAGGCTGTACCCCTATCAAA
TCACAAATAAGAAACGCGAAATAATTTCACTGAAAgagatttatttcaaa
aataaatgtgCAGATCTCTCTACATAGAATTAGAAAACGATTAAACTAAT
GTTAAAGGattgaaaatttattaatcACTGGATGTAATTACTGTTACACA
CTTGGAATTTCTATTGAAGAAAacttattttattaataaagtCCCAGAGA
AGTTGTAAGAACTAGACGTATAGTATGACATACTGGGTATCGAATTCGAA
CATGATTccgagtagaaggttgttgtaTGTGTTTaagaaaatgtaagaaa
atagtACCAAcgcaataattgtttttacaacagtcattatgataaaaaga
attattctatacctgtaggcaaaaacagccgtTTGATAATTAACGATATC
ACATGGCTAGTATCACAtggcaatttttttattcaaatttttttgaagat
gtcTTTTGCTCTTGCtagaaaagaaacttttaaattatttattgttctat
tgtcaatttcactttacatttttaatgacttaaagtaattaaaaagtTAA
TAATGAGAAAAATTTCGAACATTTGATTATGTGAGcactttttattttgt
aaaaaatgtttcaagttttttgttttgtttttgcctttAGGTATagaata
aaacatatattcaataggttttacgttggttattggatttatcaATCCTG
GGTGATGATAttcatcacctcgggttaataaatctcaataaccaactttt
acctattgaatatctgcttattataactttctttacaattttcataacgt
taaagttattgagaattattttttgtaCAAGTTATTCATGAAAGATGgct
catgacaattaatatgacaaagagagaaactttgataaaccttgcaaatt
tagtgaaacacgcacaagaactttttttctatagaagtggtacaaCTCGA
TAATTTTTTTCCGGACATCCTGTAGTCTGCTTTAGTTTAACATAAAAATG
TGTGCTATTTAAAAAgtgtaattttgattgtttaaaATTCTTATAGTACG
TCGTTACAGGTCATATTTAAAGAAGGCTACACTTAGATGTTTCATTCATT
TGTAGTAGATTGTAATAAAATAGTAGTAAACACACAAACTAATAACTTAT
CGATAATACTCTCTTTCAAGGATGgggaaaaacaagaaattaTCCACCAC
AAGATGCAAGATATCTCCAACAAGCTGAACTTCCAGTTGTCCAGTCTCCA
CACAAAGGTTGTCATTACAACGAAGAAGTTGTTTGCGTGGGTAAAGGATT
TGATAATCGACCTNCAGGCACTGGCGCTCCACCAAAGCTTCAACAAGCTA
AGCTTCCAGTTGTTGGTACGCCACACAGAGGTTGCCATAACAACAAAGAA
GTCGTTTGCGTTGGTCTTGGATTCGGAAAACAATCTGACGGTAAACAACA
TCCAAACGCATGCCGTGGTGATTCTGGTGGCCCATTGATGTGTCAACAAT
CAAACGGATCATGGACTGTTGAAGGTGTTGCTAGTTATGTTTACACTTAT
TGTAAATACTACACAGCTTACGCTCCAGTCAACAAATACTTGCCTTGGAT
CAAGCAATACGTTCGTGATttgtaaattgtgaaaaacaaagAGATGTATC
ATATCAGTCTTtaagtaaaatatattttaaagagATGTCTCAACTAATGA
ATTTTTAAAACCTTCTCATTGGTTATTCTGTTTCAGGGGCATTAGGATTT
TTCGTCGATCTGGGAGATTTGGTTTGGTCGAATATATATTTCTGATAGAA
GATCTTTGAAGGTAGAATTGGTTGGCTCTTTGTTTTGATTCCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018059-exon-sc0000284-1491911889:357041..357210 | TCONS_00018059-exon-sc0000284-1491911889:357041..357210 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1510915933:357041..357210 | TCONS_00018059-exon-sc0000284-1510915933:357041..357210 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1575043694:357041..357210 | TCONS_00018059-exon-sc0000284-1575043694:357041..357210 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1491911889:357627..357912 | TCONS_00018059-exon-sc0000284-1491911889:357627..357912 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1510915933:357627..357912 | TCONS_00018059-exon-sc0000284-1510915933:357627..357912 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1575043694:357627..357912 | TCONS_00018059-exon-sc0000284-1575043694:357627..357912 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1491911889:361261..361934 | TCONS_00018059-exon-sc0000284-1491911889:361261..361934 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1510915933:361261..361934 | TCONS_00018059-exon-sc0000284-1510915933:361261..361934 | Clytia hemisphaerica | exon |
| TCONS_00018059-exon-sc0000284-1575043694:361261..361934 | TCONS_00018059-exon-sc0000284-1575043694:361261..361934 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000284 | supercontig | sc0000284:357041..361934 + |
Blast
BLAST of TCONS_00018059 vs. Swiss-Prot (Human)
Match: CELA1 (Chymotrypsin-like elastase family member 1 OS=Homo sapiens GN=CELA1 PE=1 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 7.122e-31 Identity = 97/292 (33.22%), Postives = 142/292 (48.63%), Query Frame = 3
Query: 48 SQSRVVNGVEAKPGAWPWIVSIQ--NGYIASHFCGGTILTPNWVLTASHCIKGRQNDPGYFRMVAGVHDQWRPEGTQQNVGAKRIIMHP--NYDRQTANADVALIELSTPFRLNDRVVKACMPQQGVYPAAGNGSKCFIAGWGKTRNYPPQDARYLQQAELPVVQSPHKGCHYNEEVVCVGKGFDNRPXGTGAPPKLQQAKLPVVGTPHRGCHNNKEVVCVGLGFGKQSDGKQHPNACRGDSGGPLMCQQSNGSWTVEGXXXXXXX----XXXXXXXXXPVNKYLPWIKQYV 899
+ +RVV G EA +WP +S+Q +G H CGGT++ NWV+TA+HC+ ++ FR+VAG H+ + +GT+Q V ++I++HP N D A D+AL+ L+ LN V +PQ+G A N S C+I GWGKT+ Q A+ LQQA LP V + +C + G +VC G G G +S C+GDSGGPL C NG ++V GV S+V + + T + V+ Y+ WI +
Sbjct: 15 TNARVVGGTEAGRNSWPSQISLQYRSGGSRYHTCGGTLIRQNWVMTAAHCVDYQKT----FRVVAGDHNLSQNDGTEQYVSVQKIVVHPYWNSDNVAAGYDIALLRLAQSVTLNSYVQLGVLPQEGAILA--NNSPCYITGWGKTKT-NGQLAQTLQQAYLPSV----------DYAICSSSSY-------------------------WGSTVKNTMVCAG-GDGVRS-------GCQGDSGGPLHC-LVNGKYSVHGVTSFVSSRGCNVSRKPTVFTQVSAYISWINNVI 255
The following BLAST results are available for this feature:
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