TCONS_00018019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018019
Unique NameTCONS_00018019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018019 ID=TCONS_00018019|Name=TCONS_00018019|organism=Clytia hemisphaerica|type=transcript|length=998bp
aaaaataatccTAGGGGGAGACTAAACACTCAAGGTTTTTTTAGTCACCA
AaccttttttaagttttaaggcTGAGGTTTTCGGCTTTTTGGCATCTTGT
ACAGTATAATTTCGTTTCTCGCTCTTCGTCATTTTTCGTCCATCCTTTAG
AACCCATAATCCGGGGTAAAAGTTTGTTGTAGGCACCCCTTATTCTGTAA
GTGGTACTTTAAATGCCTTGAGGGAATTAGTTTTGACTAAGACTTTTTTT
TGCGATGTAGCaagttttttattaattttggcgaggcAGTTATTTCTTCA
ATATTGGCGAGTTAACTTAGCCAAAATTAATTACCTATAAGATATTTGTT
TCGTTTATTGGCATGTCCTATTAATTACCTTGGAAATAAAGGATAGTCAG
TTGATTGAGTAAAAAAATATCAGATTAGTTTTAAAATCAATGATAATGTG
AGCTTTCAGGACTTGGACAGTTGATGTAAAATCCACTCTGCTTTTTCCGG
ACTAACTGTATTTCTTATGAAATagatcaaaataaataaaatgaaaatta
aatgaacTAAATGACGAAACAATTCGAAACTGTCTGTGCTCATCTTCTGC
ATCAAtgcaaaaatgctgacgtcatcagtgACGAATTAATTGTAGCATTA
CATAATGTTTTTCAATCTAATGTGGTGGTTGAAGCAGCGAAATTAGTAGA
TGAAAAGAAGATTCAATCCTTGATGTCGGAATCTGGACGCCATATATTCA
AGGTGAAAGGTAGCAATGAGAAATGGTACATGGTTTCATCTTCGAGTTTT
TATTGCAGTTGTCCATCATTTACTTTTCAATTTCTCAAAAAGAAATCTTC
ATACCTATGCAAACACGTGCTTGCAACGTTTTTATACAAAAGAGATGTGA
CCACAGTTACGAATGAAGAATTGACTCTTTTTCTAATGTCATGTTTTGAT
TCTTGATGTTCTTTATatcataaatgtttttttataagaactttcaaa
Run BLAST on NCBI

protein sequence of TCONS_00018019-protein

>TCONS_00018019-protein ID=TCONS_00018019-protein|Name=TCONS_00018019-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MTKQFETVCAHLLHQCKNADVISDELIVALHNVFQSNVVVEAAKLVDEKK
IQSLMSESGRHIFKVKGSNEKWYMVSSSSFYCSCPSFTFQFLKKKSSYLC
KHVLATFLYKRDVTTVTNEELTLFLMSCFDS
Run BLAST on NCBI

transcript from alignment at sc0000282:344927..346770-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018019 ID=TCONS_00018019|Name=TCONS_00018019|organism=Clytia hemisphaerica|type=transcript|length=1844bp|location=Sequence derived from alignment at sc0000282:344927..346770- (Clytia hemisphaerica)
AAAAATAATCCTAGGGGGAGACTAAACACTCAAGGTTTTTTTAGTCACCA
AACCTTTTTTAAGTTTTAAGGCTGAGGTTTTCGGCTTTTTGGCATCTTGT
ACAGTATAATTTCGTTTCTCGCTCTTCGTCATTTTTCGTCCATCCTTTAG
AACCCATAATCCGGGGTAAAAGTTTGTTGTAGGCACCCCTTATTCTGTAA
GTGGTACTTTAAATGCCTTGAGGGAATTAGTTTTGACTAAGACTTTTTTT
TGCGATGTAGCAAGTTTTTTATTAATTTTGGCGAGGCAGTTATTTCTTCA
ATATTGGCGAGTTAACTTAGCCAAAATTAATTACCTATAAGATATTTGTT
TCGTTTATTGGCATGTCCTATTAATTACCTTGGAAATAAAGGATAGTCAG
TTGATTGAGTAAAAAAATATCAGATTAGTTTTAAAATCAATGATAATGTG
AGCTTTCAGGACTTGGACAGTTGATGTAAAATCCACTCTGCTTTTTCCGG
ACTAACTGTATTTCTTATGAAATAGATCAAAATAAATAAAATGAAAATTA
AATGAACTAAATGACGAAACAATTCGAAACTGTCTGTGCTCATCTTCTGC
ATCAATGCAAAAATGCTGACGTCATCAGTGACGAATTAATTGTAGCATTA
CATAATGTTTTTCAATCTAATGTGGTGGTTGAAGCAGCGAAATTAGTAGA
TGAAAAGAAGATTCAATCCTTGATGTCGGAATCTGGACGCCATATATTCA
AGGTATAATTATACACTTCAATCATACCCATCTCTTCATTATAATGCTTC
GATTCTAAGTCTGCATCGAAAATTGAATAGAAGGGTTCTAAATCTTTTTG
TTTTTAGGTAAAATTGATACTTCTAAACAACGATCTAAACAGAGAGAGTG
GGAATTTTAGAAGCTGATTTGGCTTCGACTCCCTAAATAGAAGAAATTTC
AGCGAAATATTCCCGAAATTTAAAAATTATTGTATTCATTCCTCAAATTT
GTGCTATTTGAGGCCTTAAAACAGGTTTTTTCTTATCAAATAGCGTTTTT
AGGCCAAAAATATCACTCATCCGCCAAAGTAAATTCCCGCTAAAGTTTTT
TCTATAATTTCTTCCCTTAAGGTATGAGGTTATTTTGGTATTTCTCTTTA
GCCTCGTATAATTCGTATAATTCTTCGTATAATTCCTCATAAGGTTAATG
AAATCCATCCAATGAGGATTGTTGGCAAGAAGAAAACATACACGTGTCAT
TATTTTATAGACTGGAAAGTAGATGTTGACAAAGTAAATTTCACTTTATG
AGCCCTCCAGCGGACCTTCATTACACTCAATCACGCAATTTTTTTCTCCC
AAATTCACGCATTCGCGCAATGTTTTTTCGCAATTCACGCAATTCTTGTT
CACGCAAAGCTTTCCAATTCACCCATTCACGCAATGTTTTATTAATTTTC
ACGCATCCAAGTGAAAAAGCCTATTCATGCATTCACGCAAACCGCTGGGG
GCCCCCTTTATGACATAATAGTAAGCCAGAAACATGAAAAATATACTACC
TTGATATCAAGTCCAAACTTTCCAATGATTCTTTCGTCCTTTTTTCAGGT
GAAAGGTAGCAATGAGAAATGGTACATGGTTTCATCTTCGAGTTTTTATT
GCAGTTGTCCATCATTTACTTTTCAATTTCTCAAAAAGAAATCTTCATAC
CTATGCAAACACGTGCTTGCAACGTTTTTATACAAAAGAGATGTGACCAC
AGTTACGAATGAAGAATTGACTCTTTTTCTAATGTCATGTTTTGATTCTT
GATGTTCTTTATATCATAAATGTTTTTTTATAAGAACTTTCAAA

Coding sequence (CDS) from alignment at sc0000282:344927..346770-

>TCONS_00018019 ID=TCONS_00018019|Name=TCONS_00018019|organism=Clytia hemisphaerica|type=CDS|length=792bp|location=Sequence derived from alignment at sc0000282:344927..346770- (Clytia hemisphaerica)
GTGAAAGGTAGCAATGAGAAATGGTACATGGTTTCATCTTCGAGTTTTTA
TTGCAGTTGTCCATCATTTACTTTTCAATTTCTCAAAAAGAAATCTTCAT
ACCTATGCAAACACGTGCTTGCAACGTTTTTATACAAAAGAGATGTGACC
ACAGTTACGAATGAAGAATTGACTCTTTTTCTAATGTCATGTTTTGATTC
TTGAATGACGAAACAATTCGAAACTGTCTGTGCTCATCTTCTGCATCAAT
GCAAAAATGCTGACGTCATCAGTGACGAATTAATTGTAGCATTACATAAT
GTTTTTCAATCTAATGTGGTGGTTGAAGCAGCGAAATTAGTAGATGAAAA
GAAGATTCAATCCTTGATGTCGGAATCTGGACGCCATATATTCAAGGTGA
AAGGTAGCAATGAGAAATGGTACATGGTTTCATCTTCGAGTTTTTATTGC
AGTTGTCCATCATTTACTTTTCAATTTCTCAAAAAGAAATCTTCATACCT
ATGCAAACACGTGCTTGCAACGTTTTTATACAAAAGAGATGTGACCACAG
TTACGAATGAAGAATTGACTCTTTTTCTAATGTCATGTTTTGATTCTTGA
ATGACGAAACAATTCGAAACTGTCTGTGCTCATCTTCTGCATCAATGCAA
AAATGCTGACGTCATCAGTGACGAATTAATTGTAGCATTACATAATGTTT
TTCAATCTAATGTGGTGGTTGAAGCAGCGAAATTAGTAGATGAAAAGAAG
ATTCAATCCTTGATGTCGGAATCTGGACGCCATATATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010096XLOC_010096Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018019-proteinTCONS_00018019-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018019-exon-sc0000282-1575043694:346019..346770TCONS_00018019-exon-sc0000282-1575043694:346019..346770Clytia hemisphaericaexon
TCONS_00018019-exon-sc0000282-1575043694:344927..345172TCONS_00018019-exon-sc0000282-1575043694:344927..345172Clytia hemisphaericaexon
TCONS_00018019-exon-sc0000282-1510915933:346019..346770TCONS_00018019-exon-sc0000282-1510915933:346019..346770Clytia hemisphaericaexon
TCONS_00018019-exon-sc0000282-1510915933:344927..345172TCONS_00018019-exon-sc0000282-1510915933:344927..345172Clytia hemisphaericaexon
TCONS_00018019-exon-sc0000282-1491911889:346019..346770TCONS_00018019-exon-sc0000282-1491911889:346019..346770Clytia hemisphaericaexon
TCONS_00018019-exon-sc0000282-1491911889:344927..345172TCONS_00018019-exon-sc0000282-1491911889:344927..345172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000282supercontigsc0000282:344927..346770 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.640243	0.69531	0.680001	0.308906	0	0	0	0	0.3173	0.407763	0.162616	0.59655	0.331926	0.239983	0.505114	0.392486	0.267621	0.49312	0.285343	0.40847	0.433211	0.261627	0.757088	0.512917	0	0.211583	0.423605	0.346649	0.339515	0.394477
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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