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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018002 ID=TCONS_00018002|Name=TCONS_00018002|organism=Clytia hemisphaerica|type=transcript|length=549bp
AATACGCATCACTTTACTCGAGGAAGCAGTGTGCTTTGAGgttaaaagaa
aagtgatttAAGATCAAAGGCTAACGAACGAAGAAGATTTCATACGCACA
CATGTAAGGAAGGTTAAAGCACGCCTTTACATTTTCGAACAATTTGTGAG
GAGTTTAGAATTTGAATTGAAGGTTGTCCACTGAGGAAGAAAAATCTAAT
ACGGAGAATCAAGGATGTGGAGTATGATCCTGCAActgcttttgattttt
ctacTGACGTCACAGACACAAGCCTTACCAGCGcaaaaaatcaACGAAGT
TCCCCCGCCGAACTGTATTTCAACGCCTTACCCATCATGCAATGCAAATA
ACACGTGTCCATCTGGATGTTTTGCAAGGATATTTACCGGGCCGCCTTCA
GTTTTACAGAATTTGATAATGTGGGGGCTCTCACCGTGCACATGCGTTcc
gaatattttcaaaaacacgAACGGTGGAACGAACGAATAAATGAAGTAAA
AGGGCCGAACACCTGATTGAAGACCGAACGTTCGAAAGATCTTTTCCAC Run BLAST on NCBI transcript from alignment at sc0000282:138050..144738- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018002 ID=TCONS_00018002|Name=TCONS_00018002|organism=Clytia hemisphaerica|type=transcript|length=6689bp|location=Sequence derived from alignment at sc0000282:138050..144738- (Clytia hemisphaerica)
AATACGCATCACTTTACTCGAGGAAGCAGTGTGCTTTGAGGTTAAAAGAA
AAGTGATTTAAGATCAAAGGCTAACGAACGAAGAAGATTTCATACGCACA
CATGTAAGGAAGGTTAAAGCACGCCTTTACATTTTCGAACAATTTGTGAG
GAGTTTAGAATTTGAATTGAAGGTTGTCCACTGAGGAAGAAAAATCTAAT
ACGGAGAATCAAGGTAAAATTGAGACTTTTTAAAACATTGAGATAAATAG
CCATCCATGTTATGGTTCAAATTTCTGAATTCAGTGTGTCTGGAAAAAAC
TGGGACAGATTTTATATAAAGTGAAATCCCTAGAAACACCCCCTTCTCAC
AGAGCCACTGGGAAGCCCTTCCCACTGGAAAAATTGACCAAAATATCGTC
CCCGGTGGAAAATTATCCAACTGCAAAAGTAACCATAGCCTTATTACACC
CCGTGTCACAGACCCGGTGGGACCTCCTCACACTGGAAATTTTGGACATA
ATTTCGTCCCCAGTTGGAAAATACCCTATTTCAGCTCCACTGGGAAATTG
ACTTTGATTTCATCCCTATTTAATATGAATGAAGAAAAATGCACTCCAAA
AGCATATTGGATTTTTTGAGCAGCGAACAATAGAATTTCTATTACCTGCG
GGTTTTTGATAGAAATTTTCATTNAGATTTTTTGAGCTGTGAACAATAGA
ATTTCTATCCCCCGCAGGTTTTTGATAGAAATTTTCATTCCCAATGCTGT
GGTAGAGAGTTTCTCCGCGGCTGCGAGACAGGGGTGTCTTATTCCTAGTG
CTCTTTTTGACCTTTGAAAAAGAACCAAAAGTCTTCACAAAGCGAAATAT
TTAGAGGATCAAAGAAAGATATGTCTCAAAACAACGCGGATAGAACTTCC
CAAAGCCAAATAAATTTTGATTTTTCTAGAAATTTGTAACTTTTGAGATT
TTTAACTGTAACCATTTTTCTAATAGGATGTGGAGTATGATCCTGCAACT
GCTTTTGATTTTTCTACTGACGTCACAGACACAAGCCTTACCAGCGGTAA
GTCAAAACCTACACTTATCACTTTTCCTCAAATGCACGTATTTTATTAAA
TTTACCGATAAATATTGATTAACCCGGGGGGGGGTACTAGGGTTGGTGAA
TGAGGGGTATGTGCGGACGGGACCTCCGAAAACCGACCCTTAGAGAGACC
AAATTTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTTTTG
ATAGAAATTTTCATTCCCACTGCTGTGGTAGAGAGTTTCTCCGCGGCTGC
GAGACAGGGGTGTCTTATTCCTAGTGCTCTTTTTGACCTTTGAAAAAGAA
CCAAAAGTTTTCACAAAGCGAAATATTTAGAGGATCAAAGAAAGCTATGT
CTCAAAACAACGCGGATAGAACTTCCCAAAGCTAAATAAATTTTGATTTT
TCTAGAGATTTTCAACTGTAACCATTTTTCTAATAGGATGTGGAGTATGA
TCCTGCAACTGCTTTTGATTTTGCTACTGACGTCACAGACACAAGCCTTA
CCAGCGGTAAGTCAAAACCTACACTTATCACTTTTCCTCAAATGCACGTA
TTTTATTAAATTTACCGATAAATATTGATTAACCGACAAATAAAGTAAAA
ATGACGTATTCTGTCTCTTTACTAATCTTTGAGAAAAACACGTATTTTTT
ATAAGAACATAAGGTTTTCAATGACCATATATTATGAACAAGTTAAGAAC
ATCTCAAGGCTTTACAGACTAAAACACCCGATCTCTTAGGAAAATGGACA
AAAATACTCAAAAAATGGTGAAAATGAGAACATGTTAAGAAAATTTTTAG
GCTTAAAACTCAAAAAGTTTGGATGTTTTTATAAAAAATCTCTGACACAA
TTACATAGGTTGAATAAGGAACGTTTCCCTATACAAGCTTGTTGGATATT
TTACCCGTTTTATCTGGTTTTAGTTTAGAATACCCCACCCTTCCTCCAAG
GGAGTTCAACTTCCCACCTCAAAAGCTATATGAGCCGTTTTAATCTTTAT
ATTTACAATATTTTCTAAAACTCATCCTCTCAACACAGTATAAAAACTTC
AAAAGAAAAATTTGAATGGTTTGAAAAAATAAATGATGACGTCATGAAAA
TGGTTAAACTTCCAGCGGAATATTCCCACGTTAAAAGAATGAGGAATTTT
TAAGTTTAAAGGCCAACTCTAATGAATGACGTAGTAAAGTTCATTAAAAT
GTTAATCCACCGATCGTCAACAAAAGGAAATTAATTGGTTGGCAATCAAT
CAAGTCCAAAAACTCATTAAGATTTTTCTTTTCAATCTAGCAATTATCAA
GTACAAAAAGATTCACTTTGAAAAAATCATTGATTAAATTGAAAGAACGA
TATTTCAAGTCGAAAAAAAAATTGATTACAGGAACCTTAAATCCCAGAAA
TTCCGATAATTCCAAAAAAAATTTCAAATATCTCAAAAGAAATACCAAGA
AGTTTCGAAATTTTTCTCAGATCCCAGAAATCCCAAACAGTTACATCAAT
ATGCCTTCTTACCTGTCTTTAAAAATATAAATAAAAGTAATCACGGAAAA
GGACGCGAAAAAAAAAGACATAAGTGTGAGAACNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGAGACTAACTCGATGTTACAATC
CAATTATTTAAAGTTTGTCTCGGCCTTTTTATAATGAGCGAGACATACGT
TTCTCTGATTACGCAATTTTCATATTGACATTTTCGAGGCATTTTGATGT
AACTGCCAAAGCCCAAAATAATATCGAACACCCCAAAAAAAACCCAGAAA
ATTACAAAAATATGTCAAAACACATCAACCCAGAGAAACCCAGAGCTGCC
TAAAAAATCTTAATGATCTCAAAATAAAATGAGAATCTACCTCAAACAAG
TGAACACCTTTAATAATCACCTAGTTTCACCATAGCAGCCCCGTTTATAA
CATAAGAACACCCCCTTCTCACAGGACCTACTGGGAACCCTTCCGACTGA
AAAAATTGGCCAAAATATCACCTTCAGTGGAAAACTATACTCTAGATTTT
TGTCCCCGCTGAAAATAATCAAATAAGCAAATCCTCAACTGGAAAATAAT
GTGCTATTTGTTCCATCACCACTGAATTTTGACCACTCGAAAACATTGGA
ATTAAAATCCCCAGCCATAGAAAATATGGGAATATCAATCCCCATCGAGT
TTTGGTCGGTTATTTTACCCCCACTGACTGATAAAATCCCACTGGGTCTG
TGAAAAGGGGGTGTATAAGATCCACCATTAATCTTTGGATGTAATTTAAC
GAATAGCAATAACACTCATTGTCTCTCTTCAGCTCTTCTAAAAGAGGTTT
ATTTTTCCTCGGGAATTTTAAATCTCGAACGACAAAAAAATATCAAAAAT
GTAAAAAGATCAAACTTACAAAATCTTTTCTTTCATATGCCTAGAAGCTA
GATCAACATTTTGCATTTTATCGACAAAACTTCTTATTGATTCCTCCAGC
CTTGATTCCAAAATCAACTCGAAATAGCCATTTAATTCTCCATAATTTTT
TTCCAAAAAATAAAAACGTCTTTCCTCTCTTCATGCGCACATGGTTTCAA
ATACATACTGACAAATTTCGTCAAAATCTCATCCAAAGTTTTCCTTTTGT
TTTTAAACTAAAAGAGAACAATAGAAAATAATTAAAAATGGTTCGAATGT
CAAGGAAAAAACGATCGTTAAATTTTATTCGCTTCTGATTGGATGAGAAG
ATATTCTCATGGGAGAGTATAGTAATCGATTTCAAAGTGCGGTACTCCTT
CGCTGTGTTTTTATAATCAAAGACTCAAGACCATAGATTTATAAAACTCG
AAGGGCTAGATAGGGTGCTTTTGCCAATGAAGTATAAGCCCAATCTCCTT
GGTAGGATTTGAAGCCAACAAGTCCTACCCCAAAGTTACGCGGCCTTGAG
CGGCTCGCCTGGTTTTTACACAAATGACAGATTGAAACTAAAATTTACAG
CTAAATTTCGAAAAAAATATCAATCGTAAACAAAGGAATTGCTAAATTCA
ATCTGTCGTCAAAAATACGCCGCAATTTTTAAGGCTTCACTTTTTCTTGC
CTGAGAAAGGTTAGAGGTTCTACTCTAGGGCTTTAAACTCAATGGCTTTT
GCTGAAAAGTGCACCGAGGTTAGGCAGGAAATCCTACCTAAGTCACGTGA
CATTAGAATAAAATTCCAGCGCTTGATCGAAAACAATAGCAACAATATTT
TTTCCGATACCTTATCGGGGAAAACTTCGTCGGGGAAAAGTGACGAAATT
TTGGACAAGTGACGAATATTTTCCCCGACGAAAATTTTTCCCGGCCTTAA
TGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCGGCCT
TAATGCGTTTACCAACTACCAGCAAGTGACGAATTTTTCCCCGACGAAAA
TTTTCCCCGACGAAGTTTTCCCCGATAAGGTATTCAATTTTTTTTCCTGT
AATATATCTTGCCCTTCGGGCTTATTAATCTATGGTCCAGACAAGTGCAA
ATCATTAACTTCCAAGCACGAAGGGCTAGACTCGACTCCTGGATGGGAAA
TGAAGCCACTTATTTCCCATTCAAAACGCCCGCGCTTGGTATTTACACAA
ACGCCGGATTGAAGGTAAAATCTATCGCTAGATTTCAAAAAATGCATAGA
TAAAAAACAAAGGAACCGCTAGATACAATTCGTCGTCCCGGGTGCGGCAC
GTTCTTAGCGCGTTCTGGATGGGAAATAAGTGGCTCCACTTTTCCTTGAT
GCCTGGGAAAGGTTAGAGATTCTACTCTATCCCTTTGGGCTTCAAACTCA
ATGGTGCAAATAACACCCTCAGAAGGTAGCTCAGAAGGAGGAACCAGAAA
GAAAAATCTAAGCAAAAAGAGACAGGAAACTGATTATTTACCCGAGGGTA
AGGGTTTGGTAATTCTTTTTGTTACTTACCCCAATAAGACTCCAAATGGG
AAAACCCATGAACCTTTTTTCTGCCTACGTATCCCACGTTAAATTCAACC
CCAAACTACACATCTTAAAGCTCGAAAACATCAAATCGTAAAAAAAGTTT
GTATTCAATTTTTTTTCTTTTAGCAAAAAATCAACGAAGTTCCCCCGCCG
AACTGTATTTCAACGCCTTACCCATCATGCAATGCAAATAACACGTGTCC
ATCTGGATGTTTTGCAAGGATATTTACCGGGCCGCCTTCAGTTTTACAGA
ATTTGATAATGTGGGGGCTCTCACCGTGCACATGCGTTCCGAATATTTTC
AAAAACACGAACGGTGGAACGAACGAATAAATGAAGTAAAAGGGCCGAAC
ACCTGATTGAAGACCGAACGTTCGAAAGATCTTTTCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018002-exon-sc0000282-1575043694:144526..144738 | TCONS_00018002-exon-sc0000282-1575043694:144526..144738 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1575043694:143693..143762 | TCONS_00018002-exon-sc0000282-1575043694:143693..143762 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1575043694:138050..138315 | TCONS_00018002-exon-sc0000282-1575043694:138050..138315 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1510915933:144526..144738 | TCONS_00018002-exon-sc0000282-1510915933:144526..144738 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1510915933:143693..143762 | TCONS_00018002-exon-sc0000282-1510915933:143693..143762 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1510915933:138050..138315 | TCONS_00018002-exon-sc0000282-1510915933:138050..138315 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1491911889:144526..144738 | TCONS_00018002-exon-sc0000282-1491911889:144526..144738 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1491911889:143693..143762 | TCONS_00018002-exon-sc0000282-1491911889:143693..143762 | Clytia hemisphaerica | exon |
| TCONS_00018002-exon-sc0000282-1491911889:138050..138315 | TCONS_00018002-exon-sc0000282-1491911889:138050..138315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000282 | supercontig | sc0000282:138050..144738 - |
Blast
The following BLAST results are available for this feature:
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