|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017964 ID=TCONS_00017964|Name=TCONS_00017964|organism=Clytia hemisphaerica|type=transcript|length=1772bpRun BLAST on NCBI protein sequence of TCONS_00017964-protein >TCONS_00017964-protein ID=TCONS_00017964-protein|Name=TCONS_00017964-protein|organism=Clytia hemisphaerica|type=polypeptide|length=564bp MSSARNQSVTSSGPGATWSAKSCSSNERSVHGFYTNTNSTVSAPSTSRPGRun BLAST on NCBI transcript from alignment at sc0000282:8084..92428+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017964 ID=TCONS_00017964|Name=TCONS_00017964|organism=Clytia hemisphaerica|type=transcript|length=84345bp|location=Sequence derived from alignment at sc0000282:8084..92428+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000282:8084..92428+ >TCONS_00017964 ID=TCONS_00017964|Name=TCONS_00017964|organism=Clytia hemisphaerica|type=CDS|length=27072bp|location=Sequence derived from alignment at sc0000282:8084..92428+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017964 vs. Swiss-Prot (Human)
Match: MSH5 (MutS protein homolog 5 OS=Homo sapiens GN=MSH5 PE=1 SV=1) HSP 1 Score: 312.768 bits (800), Expect = 3.356e-95 Identity = 193/525 (36.76%), Postives = 303/525 (57.71%), Query Frame = 1
Query: 208 PSTSRPGIDESVLQCPAE-GGKNQVSFDGDLSNIENPDVFLSLYMVNQKLGACYYDSDVQILYVMKDIIEDNNFTMLKKLLLQVLPTVILVSTKQKEEFIECIKNLGEVQGKEESQERWNVELCPANTFNYDMAKRKILS--MSGLPGLTDQMDDEDRHLYFSSRIAFEDTNMICSVGSLLRHLDRVRPGVELET-DTPVPILFMKIFALDDVMSVDEYTYSSLQIFQREFHPSVYK-AGGTKEGLSLFGILNGTKSQQGHQLLKIWFLRPSTNLQTLEERQKCINFFAQTRNMEALNTLQDCLKNTKNIMRILGKMKSCGINVRDWQHLYKTIFHAICIGDICKGLSKDMHIIQEINETFSKELLSLGNLIKHIIDFEESAFLQHFVVKTGVDEELDERKRTFDGIPNLMTKVAQSELSKLNRSITKCSVTXXXXXXXXXXXXXTDDMKEAGNYYIDPLLEFKFMADEVVYYKSAGTQELDDQLGDLQCDIRDQETQIMHRLQDTILQYSEVLHKVIQLSAELD 1767
P RPG S PA G + + E ++ L + + LG YYD+ ++ M D + + +L+++L ++ P ++ S KQ E + L + +E +R + P+ F +++K+++LS S +P D M ++ L+ SS I F+ + ++G LL+ L R R GVELE + VPIL K F L ++++D+ TYS LQIF+ E HPSVYK A G KEGLSLFGILN + G +LL++WF RP+ +L L R I FF +N++ L L + KN+ IL +MK V DWQ LYKT++ A+ + D C+ L + + + ++I + FS +L + +LI ++DFE S F V +D E+DE+KR G+P+ +T+VA+ EL L+ I CSV Y+P +G+LL++P M EA ++ I+ L+F F+++E ++Y+SA T+ELD LGDL C+IRDQET +M++LQ +L + VL +V+ L++ LD
Sbjct: 12 PQGPRPGAASSGFPSPAPVPGPREAEEEEVEEEEELAEIHLCVLWNSGYLGIAYYDTSDSTIHFMPDAPDHESLKLLQRVLDEINPQSVVTSAKQDENMTRFLGKLASQEHREP--KRPEIIFLPSVDFGLEISKQRLLSGNYSFIP---DAMTATEKILFLSSIIPFDCLLTVRALGGLLKFLGRRRIGVELEDYNVSVPILGFKKFMLTHLVNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVIQFFLLPQNLDMAQMLHRLLGHIKNVPLILKRMKLSHTKVSDWQVLYKTVYSALGLRDACRSLPQSIQLFRDIAQEFSDDLHHIASLIGKVVDFEGSLAENRFTVLPNIDPEIDEKKRRLMGLPSFLTEVARKELENLDSRIPSCSVIYIPLIGFLLSIPRLPSMVEASDFEING-LDFMFLSEEKLHYRSARTKELDALLGDLHCEIRDQETLLMYQLQCQVLARAAVLTRVLDLASRLD 530 The following BLAST results are available for this feature:
BLAST of TCONS_00017964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.