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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017953 ID=TCONS_00017953|Name=TCONS_00017953|organism=Clytia hemisphaerica|type=transcript|length=1655bp
GTCAACATGTCGGACAAAGAAGAACTTGTTATAAAGACTTCATCTTCTGA
TAATAATTCTTCATTTCATGGTAATTGTTTAGATAAAGAATGCCCAATAA
AGAACAATATACAGAGATGCAAAAAGATCAATTTAACTCCTGACCAGGAG
AAGAAGCAGTGGTTATTAAGACTTTCTGGTAGAGAGAATACCAAAGACAA
AAACAGTGCAGTGAATGGAAATACAAGTACAAAACCAAGCAGAATTGATA
CCGATGAGACGCATTTAATAGACTCAAATCTTGAGATTATTGACAATCCA
TCATTTCTTAAAGAATCGCCAGGAGATACTCAAAGGACGACCACAACTGG
AGAACTTTCCAATCGACTGGTTGGTGAACGGAAATCAAAACCAAGCAAAG
GCAGCCTAGAGTTTACTGACACTAGTAATACAATACAGAGTCCATCAAAG
AAAAACTTGAGCCAAAGACTGAAAGCAATGAGAGAAAGCTTaaatctaag
ttttgaaaatggTGGCTCATCGACGAACCAACGAAATCGGAGTATACTAA
ATTCGTCAACTTTTTCGTCTACAAATACATCATTTTCAACGAGTTTTGAT
TCCAGTCTTTACATCGACCAATCGACGAACAGTGCAAGCTCTCCTGATTC
TATCTtcgaacaattttataaaacgTTTCGTGATGACGTCATCCGAAAGG
AATTAAAATTGCTGAGTCAGCACCACCAAGATGGTGTGTATGTTATGCCG
TCTATAAATTCTTTACAAGTATGGTTCGGTGTGATTTTTATACGGCATGG
CCCATACGAAAACGGGATATTTCACTTCACAGTCTTCTTTAAAGATGATT
TCCCCGAATCAATCCCGATAATCCGATTCCGGAGTCGGGTATTTCATCCA
CAAATTGAAATACGGAAAGGTACATTCAATGTGAGGCTAGAAACGGACGC
ACATAAAAATCGTATCCATGTGTGGGAGTTATTGAAACATTTACGAAGCT
CCTTTTACCAGCTGGATGTAAACGATTGTATGAATAAACATGCAGCAGAT
ATGTTTAGAACTAACCGAACCGGATTCGTGACAGAATGTCGGAATTGCGT
TCAAAGATCCATTGATTCTTACCACCGTCAAGGCGCCGAAGAAGAATTTA
GCAACATTATAGAAAATCCATTAAAAAGTCGTTTGGTAGAGGATGATTTT
TTCAAAGGATTTATCAAATTCTTGGTAGCAAATGCACGGAACAACCAATA
TGGTAGCTCGCTAACGAATGCTATTGGTTGGGCTAAGAACCAATTAGGAc
gtgttttaaataatttaaataCATCATATAGCATGATGGGTAATGATGAA
TAAACATTTGACGTGACTGTTTGGAAATAAACCGGAGTATTTTTTGCAGG
GTAACTCTATGACTGAACCATGCTATGAGATCATAGACATTGTACATGAT
CGGATCAGCAGTTATGAAAAAAGCTAGTTAGGTATGAAAGGCACTCAAGG
ATTTTTTCGTTATCTCCCCGCATTTAAccttaatacacgtttttttatga
gaacataagccttgggatgttcttaactttttgagttttaagcctaaaaa
tattcttagcatgttcttattttaactattttttgagtattattgtccat
tttcc Run BLAST on NCBI protein sequence of TCONS_00017953-protein >TCONS_00017953-protein ID=TCONS_00017953-protein|Name=TCONS_00017953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
VNMSDKEELVIKTSSSDNNSSFHGNCLDKECPIKNNIQRCKKINLTPDQE
KKQWLLRLSGRENTKDKNSAVNGNTSTKPSRIDTDETHLIDSNLEIIDNP
SFLKESPGDTQRTTTTGELSNRLVGERKSKPSKGSLEFTDTSNTIQSPSK
KNLSQRLKAMRESLNLSFENGGSSTNQRNRSILNSSTFSSTNTSFSTSFD
SSLYIDQSTNSASSPDSIFEQFYKTFRDDVIRKELKLLSQHHQDGVYVMP
SINSLQVWFGVIFIRHGPYENGIFHFTVFFKDDFPESIPIIRFRSRVFHP
QIEIRKGTFNVRLETDAHKNRIHVWELLKHLRSSFYQLDVNDCMNKHAAD
MFRTNRTGFVTECRNCVQRSIDSYHRQGAEEEFSNIIENPLKSRLVEDDF
FKGFIKFLVANARNNQYGSSLTNAIGWAKNQLGRVLNNLNTSYSMMGNDE Run BLAST on NCBI transcript from alignment at sc0000279:86349..88003 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017953 ID=TCONS_00017953|Name=TCONS_00017953|organism=Clytia hemisphaerica|type=transcript|length=1655bp|location=Sequence derived from alignment at sc0000279:86349..88003 (Clytia hemisphaerica)
ggaaaatggacaataatactcaaaaaatagttaaaataagaacatgctaa
gaatatttttaggcttaaaactcaaaaagttaagaacatcccaaggctta
tgttctcataaaaaaacgtgtattaaggTTAAATGCGGGGAGATAACGAA
AAAATCCTTGAGTGCCTTTCATACCTAACTAGCTTTTTTCATAACTGCTG
ATCCGATCATGTACAATGTCTATGATCTCATAGCATGGTTCAGTCATAGA
GTTACCCTGCAAAAAATACTCCGGTTTATTTCCAAACAGTCACGTCAAAT
GTTTATTCATCATTACCCATCATGCTATATGATGtatttaaattatttaa
aacacgTCCTAATTGGTTCTTAGCCCAACCAATAGCATTCGTTAGCGAGC
TACCATATTGGTTGTTCCGTGCATTTGCTACCAAGAATTTGATAAATCCT
TTGAAAAAATCATCCTCTACCAAACGACTTTTTAATGGATTTTCTATAAT
GTTGCTAAATTCTTCTTCGGCGCCTTGACGGTGGTAAGAATCAATGGATC
TTTGAACGCAATTCCGACATTCTGTCACGAATCCGGTTCGGTTAGTTCTA
AACATATCTGCTGCATGTTTATTCATACAATCGTTTACATCCAGCTGGTA
AAAGGAGCTTCGTAAATGTTTCAATAACTCCCACACATGGATACGATTTT
TATGTGCGTCCGTTTCTAGCCTCACATTGAATGTACCTTTCCGTATTTCA
ATTTGTGGATGAAATACCCGACTCCGGAATCGGATTATCGGGATTGATTC
GGGGAAATCATCTTTAAAGAAGACTGTGAAGTGAAATATCCCGTTTTCGT
ATGGGCCATGCCGTATAAAAATCACACCGAACCATACTTGTAAAGAATTT
ATAGACGGCATAACATACACACCATCTTGGTGGTGCTGACTCAGCAATTT
TAATTCCTTTCGGATGACGTCATCACGAAAcgttttataaaattgttcga
AGATAGAATCAGGAGAGCTTGCACTGTTCGTCGATTGGTCGATGTAAAGA
CTGGAATCAAAACTCGTTGAAAATGATGTATTTGTAGACGAAAAAGTTGA
CGAATTTAGTATACTCCGATTTCGTTGGTTCGTCGATGAGCCAccatttt
caaaacttagatttAAGCTTTCTCTCATTGCTTTCAGTCTTTGGCTCAAG
TTTTTCTTTGATGGACTCTGTATTGTATTACTAGTGTCAGTAAACTCTAG
GCTGCCTTTGCTTGGTTTTGATTTCCGTTCACCAACCAGTCGATTGGAAA
GTTCTCCAGTTGTGGTCGTCCTTTGAGTATCTCCTGGCGATTCTTTAAGA
AATGATGGATTGTCAATAATCTCAAGATTTGAGTCTATTAAATGCGTCTC
ATCGGTATCAATTCTGCTTGGTTTTGTACTTGTATTTCCATTCACTGCAC
TGTTTTTGTCTTTGGTATTCTCTCTACCAGAAAGTCTTAATAACCACTGC
TTCTTCTCCTGGTCAGGAGTTAAATTGATCTTTTTGCATCTCTGTATATT
GTTCTTTATTGGGCATTCTTTATCTAAACAATTACCATGAAATGAAGAAT
TATTATCAGAAGATGAAGTCTTTATAACAAGTTCTTCTTTGTCCGACATG
TTGAC Coding sequence (CDS) from alignment at sc0000279:86349..88003 >TCONS_00017953 ID=TCONS_00017953|Name=TCONS_00017953|organism=Clytia hemisphaerica|type=CDS|length=1353bp|location=Sequence derived from alignment at sc0000279:86349..88003 (Clytia hemisphaerica)
TTATTCATCATTACCCATCATGCTATATGATGtatttaaattatttaaaa
cacgTCCTAATTGGTTCTTAGCCCAACCAATAGCATTCGTTAGCGAGCTA
CCATATTGGTTGTTCCGTGCATTTGCTACCAAGAATTTGATAAATCCTTT
GAAAAAATCATCCTCTACCAAACGACTTTTTAATGGATTTTCTATAATGT
TGCTAAATTCTTCTTCGGCGCCTTGACGGTGGTAAGAATCAATGGATCTT
TGAACGCAATTCCGACATTCTGTCACGAATCCGGTTCGGTTAGTTCTAAA
CATATCTGCTGCATGTTTATTCATACAATCGTTTACATCCAGCTGGTAAA
AGGAGCTTCGTAAATGTTTCAATAACTCCCACACATGGATACGATTTTTA
TGTGCGTCCGTTTCTAGCCTCACATTGAATGTACCTTTCCGTATTTCAAT
TTGTGGATGAAATACCCGACTCCGGAATCGGATTATCGGGATTGATTCGG
GGAAATCATCTTTAAAGAAGACTGTGAAGTGAAATATCCCGTTTTCGTAT
GGGCCATGCCGTATAAAAATCACACCGAACCATACTTGTAAAGAATTTAT
AGACGGCATAACATACACACCATCTTGGTGGTGCTGACTCAGCAATTTTA
ATTCCTTTCGGATGACGTCATCACGAAAcgttttataaaattgttcgaAG
ATAGAATCAGGAGAGCTTGCACTGTTCGTCGATTGGTCGATGTAAAGACT
GGAATCAAAACTCGTTGAAAATGATGTATTTGTAGACGAAAAAGTTGACG
AATTTAGTATACTCCGATTTCGTTGGTTCGTCGATGAGCCAccattttca
aaacttagatttAAGCTTTCTCTCATTGCTTTCAGTCTTTGGCTCAAGTT
TTTCTTTGATGGACTCTGTATTGTATTACTAGTGTCAGTAAACTCTAGGC
TGCCTTTGCTTGGTTTTGATTTCCGTTCACCAACCAGTCGATTGGAAAGT
TCTCCAGTTGTGGTCGTCCTTTGAGTATCTCCTGGCGATTCTTTAAGAAA
TGATGGATTGTCAATAATCTCAAGATTTGAGTCTATTAAATGCGTCTCAT
CGGTATCAATTCTGCTTGGTTTTGTACTTGTATTTCCATTCACTGCACTG
TTTTTGTCTTTGGTATTCTCTCTACCAGAAAGTCTTAATAACCACTGCTT
CTTCTCCTGGTCAGGAGTTAAATTGATCTTTTTGCATCTCTGTATATTGT
TCTTTATTGGGCATTCTTTATCTAAACAATTACCATGAAATGAAGAATTA
TTATCAGAAGATGAAGTCTTTATAACAAGTTCTTCTTTGTCCGACATGTT
GAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017953-exon-sc0000279-1491911889:86349..88003 | TCONS_00017953-exon-sc0000279-1491911889:86349..88003 | Clytia hemisphaerica | exon |
| TCONS_00017953-exon-sc0000279-1510915933:86349..88003 | TCONS_00017953-exon-sc0000279-1510915933:86349..88003 | Clytia hemisphaerica | exon |
| TCONS_00017953-exon-sc0000279-1575043694:86349..88003 | TCONS_00017953-exon-sc0000279-1575043694:86349..88003 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000279 | supercontig | sc0000279:86349..88003 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR016135 | UBQ-conjugating_enzyme/RWD |
| IPR000608 | UBQ-conjugat_E2 |
Blast
BLAST of TCONS_00017953 vs. Swiss-Prot (Human)
Match: AKTIP (AKT-interacting protein OS=Homo sapiens GN=AKTIP PE=1 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.932e-24 Identity = 57/172 (33.14%), Postives = 89/172 (51.74%), Query Frame = 1
Query: 619 QSTNSASSPDSIFEQFYKTFRDDVIRKELKLLSQHHQDGVYVMPSINSLQVWFGVIFIRHGPYENGIFHFTVFFKDDFPES-IPIIRFRSRVFHPQIEIRKGTFNV-RLETDAHKNRIHVWELLKHLRSSFYQLDVNDCMNKHAADMFRTN----RTGFVTECRNCVQRSID 1116
QSTN + + FY + + E L+ + GVYV PS S +WFGVIFIRHG Y++G+F FTV+ D++P+ P + F VFHP ++ G +V R +N H+W++L + R FY++D +N AA ++ + ++ V + C R D
Sbjct: 61 QSTNGT---HASYGPFYLEYS---LLAEFTLVVKQKLPGVYVQPSYRSALMWFGVIFIRHGLYQDGVFKFTVYIPDNYPDGDCPRLVFDIPVFHPLVDPTSGELDVKRAFAKWRRNHNHIWQVLMYARRVFYKIDTASPLNPEAAVLYEKDIQLFKSKVVDSVKVCTARLFD 226
The following BLAST results are available for this feature:
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