TCONS_00017938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017938
Unique NameTCONS_00017938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length546

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017938 ID=TCONS_00017938|Name=TCONS_00017938|organism=Clytia hemisphaerica|type=transcript|length=546bp
GTCTATTTGTGGGATGAATTTCGAATTGATTGACAGCAGGTTTCTCAAGT
CCAGCATCCAAGAGTGCTTGAATATGTTCTCCATTGAAATTGGAAACTCC
AATACTTTTTGCTTTTCCCTCTTTCTTTATTTCCATCATAGCTTTCCATG
TTTCCAAGACTTTTCCAGACATCGGAGTATGAATCAAAAACAAGTCAACA
TAATCCAAGCCCAGTTTATCAAGACTTTCTTTCAAGCTTTCTTTAGCTGT
CTCATAACCGTGTTTATGAAGATCCAGTTTAGTCACAACAAATAGGTCTA
CGCGTTTGATGGAACTAGCTTTCAAAGCTCTGCCGACAGACTCTTCATTT
CCATACAAAGCAGCTGTGTCAATAAGTCGATAGCCTTCCTTAAGAGCAGC
AGTAACAGAATTGTAAGCAACGTCACCTTCGTTGTCTAGGTCCCAACATC
CAAAACCAAACAGAGGCATTGAATTTCCGTCACACAAATCAACTTTTTCT
CCAATCGAAGCCATTTTAATCACTGAAATTTTTTCCCTgctattat
Run BLAST on NCBI

transcript from alignment at sc0000279:80364..83225-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017938 ID=TCONS_00017938|Name=TCONS_00017938|organism=Clytia hemisphaerica|type=transcript|length=2862bp|location=Sequence derived from alignment at sc0000279:80364..83225- (Clytia hemisphaerica)
GTCTATTTGTGGGATGAATTTCGAATTGATTGACAGCAGGTTTCTCAAGT
CCAGCATCCAAGAGTGCTTGAATATGTTCTCCATTGAAATTGGAAACTCC
AATACTTTTTGCTTTTCCCTCTTTCTTTATTTCCATCATAGCTTTCCATG
TTTCCAAGACTTTTCCAGACATCGGAGTATGAATCAAAAACAAGTCAACA
TATTCCAAACCCAGTTTATCAAGACTTTCTTTCAAGCTTTGTTTGACTCC
TTCAGCTCCATGCTGATGCGGATCCAACTTTGTGACAAGAAAAAAATCAT
TTCTGGAAAGTCCAGAATCTTTAATCGCCTTGCCAACCGATTGCTCATTT
TTATAACAGTGTGCGGTATCGATTAATTTGTAACCTTTATTCAAGGCTGT
TAGGACAGCATTGTAGGTTGGTTCTTCATCCATGGCCCAACATCCTAAGC
CAAAAAGTGGCATAGTGTTTCCATCGTGTAGTGCTATTCGTTCAGTGAGT
GAGGCCATGTTTCTTATTAACTTTCTGTTTTCTACCCTGTAAAAATGAAA
TTAAACTTAGCAAAATCAATTGAATTTAAAGAAATCTGATTTGATCGTAA
TTGTACATTAATCTTGTACATTTCAGCATAAACGAAGACAAACGAAGCAT
ACTTTAAGCAAGATTTAATAGTCACAAGAAATAATTAATCGACTGACACT
GACACTACGTGATGAGATTTCAATCAAAAAGGAAACTAGAGCTTTAAAAC
CCAGATAATCGCAAGCTTAACGTTAAATTGTCAAAACATTTTTCTCTCTC
ACTTTTCTGTATTTGAACGATTTAAAGGGCGTGTATGTATAACCTAAATG
TGCTATCGATAAAAAATGTCTGAAAAATAATCCGTCTACAAAAGAGAATA
CAATGATTTGAAAATATTTCCTCTTTATAAAAAATCTACAACATTTTTGA
AGGTTGTGAATTATAACTGCACATTCTCGCATCTTCCAGGGCTACACTCG
CATCATCCAGAGCCACATTTACATTTCCCATTGGCCAGGCTTATCATTAC
CTTTGATTTCATTCCAAGTATGCTTCATAGCTTCACAAGCTACCGAAATT
TGCATGTCAGTTTTCAGATTCTCAAATCTGGACATCTCTTCATCAGAAAG
AACAAAATCATATAATTGACAATTCTCACGGATATGTACAGCGCTTGTTG
ACTTTGGAATTGTGATATAACGTTTTTGAAGGGCCCACCGTAAGCAAACC
TGAGAAACAGTTTTGTTAACTTTGTTAGATATCTCTTCGGCTAATGGACA
TGTTCCAGGTTTAAGGATTTGTCCACGTGCTAAGGGACAGTAACCCATGA
CGGTAATATCATTGTCACGGCAATATTTGACAACTTCATCCTGTAAGAAA
AGAACCAGAACCGGATATAGCCCTTGTCTGTACACAGACCCATTAGTGAG
GTTAATTATACCGACATAATCGCGACGACGGACGAAAAATGTAACAGGCT
AGTGAAAATACGAAAATTGATTGGTTGAAACTCACTAGCCTGTTATANCC
TTGTCTGTACACAGACCCATTAGTGAGGTTAATTATACCGACATAATCGC
GACGACGGACGAAAAATGTAACAGGCTAGTGAAAATACGAAAATTGATTG
GTTGAAACTCACTTGAAACTTTCGTCATGATTATATCGATTTACTTAACC
TCACTAGTATCTACGGCCAATTTCAAAATTCATTGCCGTAGAGGGTCTGT
TGTCATTGTCTTTTCTCTTTTGAAATTTTTCAAACCGACCGCTGCAATGG
GATGTTGGTGAGAGAGGGGAGACGACGAGATAGAGGAGTGTTGTTATTTA
TAAATCATACTTCATCGCAGAGGTTTCCGTACGGGAATCTTTTTAGCAAA
CAGACAATGCGCACAGAGTGTACTTCCAAGCGATAAACGTGAGATACATT
CTGGTACAGAGTAATAGCCCAAGCCCATAGCAACTGATGACGGCATTATA
GCGAAAAGCTTTTTTTACATTTTCAAAAAATGCCGTTCTCTTTTTTCATT
GAAAGAAGCGATTGGATCGATTTTAGAATACAGATCTTACATTTTGAAGA
AGTTTGGAAGACATCTTTTATTCGTGTACATCTTTAGGGGAAAAAAGTAC
CGGGTTCGCTACAAAAAAGCTTGTCTCTGTTTAAACTTAATTTTTTTGAA
CTATTTGAACAGTAAACTTTTGATGGCTCAATTTTCAAACTTTTTTCATT
AAAACATACCCTCCTATGCATAGGATGAATTTCGAATTGATTAACAGCAG
GTTTCTCAAGTCCCGCATCTAAGAGTGCTTGAATATGTTCTCCATTGAAA
TTGGAAACTCCAATACTTTTTGCTTTTCCCTCTTTCTTTAGTTCCATCAT
AGCTTTCCATGAATCCAAGACTTTTCCAGGCATCGGAGTATGAATCAAAA
ATAAGTCAACATAATCCAAGCCCAGTTTATCAAGACTTTCTTTCAAGCTT
TCTTTAGCTGTCTCATAACCGTGTTTATGAAGATCCAGTTTAGTCACAAC
AAATAGGTCTTCACGTTTGATGGAACTAGCTTTTAAAGCTCTGCCGANTC
ACAACAAATAGGTCTACGCGTTTGATGGAACTAGCTTTCAAAGCTCTGCC
GACAGACTCTTCATTTCCATACAAAGCAGCTGTGTCAATAAGTCGATAGC
CTTCCTTAAGAGCAGCAGTAACAGAATTGTAAGCAACGTCACCTTCGTTG
TCTAGGTCCCAACATCCAAAACCAAACAGAGGCATTGAATTTCCGTCACA
CAAATCAACTTTTTCTCCAATCGAAGCCATTTTAATCACTGAAATTTTTT
CCCTGCTATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010052XLOC_010052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017938-exon-sc0000279-1575043694:83027..83225TCONS_00017938-exon-sc0000279-1575043694:83027..83225Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1575043694:80670..80765TCONS_00017938-exon-sc0000279-1575043694:80670..80765Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1575043694:80364..80614TCONS_00017938-exon-sc0000279-1575043694:80364..80614Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1510915933:83027..83225TCONS_00017938-exon-sc0000279-1510915933:83027..83225Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1510915933:80670..80765TCONS_00017938-exon-sc0000279-1510915933:80670..80765Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1510915933:80364..80614TCONS_00017938-exon-sc0000279-1510915933:80364..80614Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1491911889:83027..83225TCONS_00017938-exon-sc0000279-1491911889:83027..83225Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1491911889:80670..80765TCONS_00017938-exon-sc0000279-1491911889:80670..80765Clytia hemisphaericaexon
TCONS_00017938-exon-sc0000279-1491911889:80364..80614TCONS_00017938-exon-sc0000279-1491911889:80364..80614Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000279supercontigsc0000279:80364..83225 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.1012	26.8224	10.1981	5.17511	7.82336	6.70974	13.9405	14.2918	13.868	13.7241	27.9895	14.8508	22.0822	25.4882	24.581	25.4228	12.1073	15.5382	12.1002	13.0891	3.66281	5.88458	11.0477	12.028	15.4831	15.1173	1.74845	2.77532	7.44928	7.84847
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020471Aldo/keto_reductase
IPR023210NADP_OxRdtase_dom
IPR018170Aldo/ket_reductase_CS
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
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BLAST of TCONS_00017938 vs. Swiss-Prot (Human)
Match: AK1C3 (Aldo-keto reductase family 1 member C3 OS=Homo sapiens GN=AKR1C3 PE=1 SV=4)

HSP 1 Score: 122.094 bits (305), Expect = 4.243e-33
Identity = 81/195 (41.54%), Postives = 108/195 (55.38%), Query Frame = -3 
Query:   11 MASIGEKVDLCDGNSMPLFGFGCWDLDNEGDVAYNSVTA-ALKEGYRLIDTAALYGNEESVGRALKAS----SIKRVDLFVVTKLDLHKHGYETAKESLKESLDKLGLDYVDLFLIHTPMS-------------GKVL-------ETWKAMMEIKKEGKAKSIGVSNFNGEHIQALLD-AGLE-KPAVNQFEIHP 514
            M S  + V L DG+ MP+ GFG +            VT  A++ G+R ID+A LY NEE VG A+++     S+KR D+F  +KL    H  E  + +L+ SL K  LDYVDL+LIH+PMS             GKV+        TW+AM + K  G AKSIGVSNFN   ++ +L+  GL+ KP  NQ E HP
Sbjct:    1 MDSKHQCVKLNDGHFMPVLGFGTYAPPEVPRSKALEVTKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSTFHRPELVRPALENSLKKAQLDYVDLYLIHSPMSLKPGEELSPTDENGKVIFDIVDLCTTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVCNQVECHP 195
The following BLAST results are available for this feature:
BLAST of TCONS_00017938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AK1C34.243e-3341.54Aldo-keto reductase family 1 member C3 OS=Homo sap... [more]
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