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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017911 ID=TCONS_00017911|Name=TCONS_00017911|organism=Clytia hemisphaerica|type=transcript|length=1706bp
CTAGCTTAGTCATCTTTCACTCTGTCGTATCATAGTGTGGCTTGGATATT
TTTGTTACTGAGAATGGCGGAAAACTTacaagaaagtgaagaaaatttaG
TTACCAGTGTAACGAACGCAGATTTAGAAAGTTTCATAAACCATGATCCC
GAAGATATTGTTTATAAGGAGTTCGAAAACGACCCAAATGTAGCGACAGA
TCCTCATTTTAAATGGAAATGTAtgaaaacagtttttttattGAACTTTT
TTGGTGCATTTGGTGTTGGTCTGCTATCAATATTATGCGTCTATTTCGAC
CTGAATTTCAGTAACCTTTGTGACTCTACGAAATGGATAAATTTACCACA
TAACATCAAAATTGCACACTTGTACAGTAAAGCTGCTTCTGATCAAATCT
ATCTATTTTGGTATGTCATAAACCTTTTGCTCGTTTTTGAAGTGTCGAAA
ATTCAAAGACAAGTCTTGATACTGGCAAACTTATTGGCTGGTTGTGTATG
CACTATATGGAGACTATCAACTGTTGCCACAGATTTGTATGGGAAATCGT
CACTTCTAGGAGCGCCGCAGTTCTTGATTTTCATCGTAATGAGCATATAT
ACAACAAGCGTTGTCTTAAAAGAAAGAATAACAACTGGTTTTTGGAGACG
TCTCATCGTGACGCTGAACGTCAACAACCAAATTATCATAGCTTTCGTTT
TTTATCTGGTCCATTTCTACGTCATCTTGCCGACATTCATCAAAGCGTCA
ATCTACATTCGCCTGGCGATGGCATTCTTTATACCGGTTGTCGGATACGG
TGCACGAATTTTATGTCGTGTTTGTCTTCAACACATAAAGCATATACTAC
ACCCAGGACGGTTGTATATTCTTTCAGCAGGGCTGCATGCATTAACAGTG
ACTTTATATCGGATCTTACAAGCCAGTGTCCAATCAACGTGGGCTTTTAT
TGCTCTCGGATTGGCTCATTCTGTGGTTGGTTTCATCGATAAAATATCAG
TTCTTTACCAACGATCAGCTTTATCATTTGTATGCAGAAAGTTTTGTTTT
CGAGTATATAGAGTAAAACGAAACCCAAGAGAAATGCGTGAGTCAgcaga
tattttgattttgaatttggTATATGAGTTATGGGGAGTTATGATCACAT
GTTTCACATATACGTTATATGCTGTTCAACATTCGATACCTTTGAatcca
aaaatcgaaaaggaATACACTCAGGGACCAGTTATTCGAGATTTGATGTA
TCGAATCATTTTTACAATTTGTGTGGAAACAATTTCGTCTACCCTGGCTG
TATTTTGGGTCATCAAGAAATCGAATTTCGCCATTATTAAGTTGTGGACT
GTTAAATGGAAATTATATTGTTTCGTTCTTGCAATGAACGCAATTTTCCC
GTTGATATTAGCTTCCAAAACATTAGTAAACATAACAGAGGAAAGCTTCA
CCTTATTTTTGATAGACTCTGGAAGACAAGATTTAGCCTCGAAGTTGAAA
ATGTGTAACTATACTTCAAGACCATATTAAGGATAACTAGGTATTCTCGA
TATTTGTAACTTTTGAATTACAGGGTGGGCAAAAAAATGTGGTCAGACAA
AGATTGTGCTACATGCAGAGCAATAGACGATATctgcttaacgaaattct
ccccgaatgattacccatgatgcattgcgcgaaaaaattcagtaagtcaa
tattgt Run BLAST on NCBI protein sequence of TCONS_00017911-protein >TCONS_00017911-protein ID=TCONS_00017911-protein|Name=TCONS_00017911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MAENLQESEENLVTSVTNADLESFINHDPEDIVYKEFENDPNVATDPHFK
WKCMKTVFLLNFFGAFGVGLLSILCVYFDLNFSNLCDSTKWINLPHNIKI
AHLYSKAASDQIYLFWYVINLLLVFEVSKIQRQVLILANLLAGCVCTIWR
LSTVATDLYGKSSLLGAPQFLIFIVMSIYTTSVVLKERITTGFWRRLIVT
LNVNNQIIIAFVFYLVHFYVILPTFIKASIYIRLAMAFFIPVVGYGARIL
CRVCLQHIKHILHPGRLYILSAGLHALTVTLYRILQASVQSTWAFIALGL
AHSVVGFIDKISVLYQRSALSFVCRKFCFRVYRVKRNPREMRESADILIL
NLVYELWGVMITCFTYTLYAVQHSIPLNPKIEKEYTQGPVIRDLMYRIIF
TICVETISSTLAVFWVIKKSNFAIIKLWTVKWKLYCFVLAMNAIFPLILA
SKTLVNITEESFTLFLIDSGRQDLASKLKMCNYTSRPY Run BLAST on NCBI transcript from alignment at sc0000279:112377..115746+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017911 ID=TCONS_00017911|Name=TCONS_00017911|organism=Clytia hemisphaerica|type=transcript|length=3370bp|location=Sequence derived from alignment at sc0000279:112377..115746+ (Clytia hemisphaerica)
CTAGCTTAGTCATCTTTCACTCTGTCGTATCATAGTGTGGCTTGGATATT
TTTGTTACTGAGAATGGCGGAAAACTTacaagaaagtgaagaaaatttaG
TTACCAGTGTAACGAACGCAGATTTAGAAAGTTTCATAAACCATGATCCC
GAAGATATTGTTTATAAGGAGTTCGAAAACGACCCAAATGTAGCGACAGA
TCCTCATTTTAAATGGAAATGTAtgaaaacagtttttttattGAACTTTT
TTGGTGCATTTGGTGTTGGTCTGCTATCAATATTATGCGTCTATTTCGAC
CTGAATTTCAGTAACCTTTGTGACTCTACGAAATGGATAAATTTACCACA
TAACATCAAAATTGCACACTTGTACAGTAAAGCTGCTTCTGATCAAATCT
ATCTATTTTGGTATGTCATAAACCTTTTGCTCGTTTTTGAAGTGTCGAAA
ATTCAAAGACAAGTCTTGATACTGGCAAACTTATTGGCTGGTTGTGTATG
CACTATATGGAGACTATCAACTGTTGCCACAGATTTGTATGGGAAATCGT
CACTTCTAGGAGCGCCGCAGTTCTTGATTTTCATCGTAATGAGCATATAT
ACAACAAGCGTTGTCTTAAAAGGTAATGTTTGCATTCTAAAGCCTTCATA
CTTTAacttagtctagcaagctagacgactaattcagacatattagaaat
aaaccaaaaaagtaaattttagtcgtctagaaacctttgtgcactaactc
caaacacaaaaaagtgtcaatatcgcaattaaaattttttcccgctcaaa
aaaaattcttgaaattaaaatgtgtgtggatttgtgtgttaaaagttttt
catttgagttgattttattttgagagcttgttgttgcttgataaattgtt
ttctcgctacgcaagtttctgcgtagctagccccggtatctataaggctg
gaacaccggattcttccggtcgtttatacaaactaaatcccgtatcattt
tttgtgtttattattagtattacatgcattataaacgactccagtctaac
tttaactggattaaatttcgcgagattaaatttcgcgagctaaaaaaatc
gcgaaattttctggatttaatttcgcgagtcagagttttgaaatatttct
gactgaaaatagccattttttgccataaatggagacttggaactagtttc
tccgccaaaaatacaattttaaaagttttgtggtggatttaatttcgcga
atcaggaatctcacgcgtgttcgcgagttttaattttgcgaaaatggaaa
aaattcgcgaaatcgcgaaatttaatctcgcgaaaattaatccgattaaa
gtatctACCCATATTCGCCACTTTCACTAAAAGACTAAAAAGTACCGATT
TGTCAAAAACACAGTAACAGCATTGGTGGAAATCGGTCAGTTCTTGTCAG
TTTACCTTGATGTAGAAGTTTTAcctttttttactatttttttcagAAGT
ACAGGGATATCGCCCGGGAGGGTACTTGGGCAAAGATGCTGGGTATGTAT
GAGTCATAAGGGTCGaaggaaacaaaaaacatttaaaagcaaattgagtc
tctgtaagggttccaaaattgcaaaaataaaaagaatcggctccttcaaa
gggtcataaattcttgaaatttcgcactaaaatgaaaatttttgactgaa
atttggggGAAATAAGTCTCTCTAAAATggaggaaattttcaaaattcag
tcTCCTCTAGGGGTCGGTTTTAAAACTTTTGCTCGAATTTACCCGTCATC
TTGCAAACTTGACCCCCCCGGATGTCGGTTAGCACCTATATCTCAAACGA
AACCGAGAACATTTAGAGTTAAGAAATCACGCTAACAGTCTGGGGGGTGC
AGGCACTTAGGAAAAACAGGTGACGGGTATGTGTTATCCATAAGGGCACC
CTTTTTCAtacctcaaaagtctctcaaagaaGTGCAAAATCATAGGTTAG
TCTCTCAAAGGGCTCTAAAATACTAAATCGAAAAATTCCCTTTCAAAGTG
TTACAATCTCAAGCATTCTGACcaaaagttattgaaaattaatcaaaatt
tgtGTAAAATCTCTCAAAGGGTCTAAAAGATATCAAACATTTCTCTCTTG
CAAAGGttcaattttagatttttggctCGTACACACCTGACGCTTTGTAA
ACCAAGTATAGCCTTTCCCTGGGTAACAGTGCAATTCTGGTTACCAAATA
AATAATTGCTTTTATTCGTAAAAATTGTTGTTATAGAAAGAATAACAACT
GGTTTTTGGAGACGTCTCATCGTGACGCTGAACGTCAACAACCAAATTAT
CATAGCTTTCGTTTTTTATCTGGTCCATTTCTACGTCATCTTGCCGACAT
TCATCAAAGCGTCAATCTACATTCGCCTGGCGATGGCATTCTTTATACCG
GTTGTCGGATACGGTGCACGAATTTTATGTCGTGTTTGTCTTCAACACAT
AAAGCATATACTACACCCAGGACGGTTGTATATTCTTTCAGCAGGGCTGC
ATGCATTAACAGTGACTTTATATCGGATCTTACAAGCCAGTGTCCAATCA
ACGTGGGCTTTTATTGCTCTCGGATTGGCTCATTCTGTGGTTGGTTTCAT
CGATAAAATATCAGTTCTTTACCAACGATCAGCTTTATCATTTGTATGCA
GAAAGTTTTGTTTTCGAGTATATAGAGTAAAACGAAACCCAAGAGAAATG
CGTGAGTCAgcagatattttgattttgaatttggTATATGAGTTATGGGG
AGTTATGATCACATGTTTCACATATACGTTATATGCTGTTCAACATTCGA
TACCTTTGAatccaaaaatcgaaaaggaATACACTCAGGGACCAGTTATT
CGAGATTTGATGTATCGAATCATTTTTACAATTTGTGTGGAAACAATTTC
GTCTACCCTGGCTGTATTTTGGGTCATCAAGAAATCGAATTTCGCCATTA
TTAAGTTGTGGACTGTTAAATGGAAATTATATTGTTTCGTTCTTGCAATG
AACGCAATTTTCCCGTTGATATTAGCTTCCAAAACATTAGTAAACATAAC
AGAGGAAAGCTTCACCTTATTTTTGATAGACTCTGGAAGACAAGATTTAG
CCTCGAAGTTGAAAATGTGTAACTATACTTCAAGACCATATTAAGGATAA
CTAGGTATTCTCGATATTTGTAACTTTTGAATTACAGGGTGGGCAAAAAA
ATGTGGTCAGACAAAGATTGTGCTACATGCAGAGCAATAGACGATATctg
cttaacgaaattctccccgaatgattacccatgatgcattgcgcgaaaaa
attcagtaagtcaatattgt Coding sequence (CDS) from alignment at sc0000279:112377..115746+ >TCONS_00017911 ID=TCONS_00017911|Name=TCONS_00017911|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at sc0000279:112377..115746+ (Clytia hemisphaerica)
ATGGCGGAAAACTTacaagaaagtgaagaaaatttaGTTACCAGTGTAAC
GAACGCAGATTTAGAAAGTTTCATAAACCATGATCCCGAAGATATTGTTT
ATAAGGAGTTCGAAAACGACCCAAATGTAGCGACAGATCCTCATTTTAAA
TGGAAATGTAtgaaaacagtttttttattGAACTTTTTTGGTGCATTTGG
TGTTGGTCTGCTATCAATATTATGCGTCTATTTCGACCTGAATTTCAGTA
ACCTTTGTGACTCTACGAAATGGATAAATTTACCACATAACATCAAAATT
GCACACTTGTACAGTAAAGCTGCTTCTGATCAAATCTATCTATTTTGGTA
TGTCATAAACCTTTTGCTCGTTTTTGAAGTGTCGAAAATTCAAAGACAAG
TCTTGATACTGGCAAACTTATTGGCTGGTTGTGTATGCACTATATGGAGA
CTATCAACTGTTGCCACAGATTTGTATGGGAAATCGTCACTTCTAGGAGC
GCCGCAGTTCTTGATTTTCATCGTAATGAGCATATATACAACAAGCGTTG
TCTTAAAAGAAAGAATAACAACTGGTTTTTGGAGACGTCTCATCGTGACG
CTGAACGTCAACAACCAAATTATCATAGCTTTCGTTTTTTATCTGGTCCA
TTTCTACGTCATCTTGCCGACATTCATCAAAGCGTCAATCTACATTCGCC
TGGCGATGGCATTCTTTATACCGGTTGTCGGATACGGTGCACGAATTTTA
TGTCGTGTTTGTCTTCAACACATAAAGCATATACTACACCCAGGACGGTT
GTATATTCTTTCAGCAGGGCTGCATGCATTAACAGTGACTTTATATCGGA
TCTTACAAGCCAGTGTCCAATCAACGTGGGCTTTTATTGCTCTCGGATTG
GCTCATTCTGTGGTTGGTTTCATCGATAAAATATCAGTTCTTTACCAACG
ATCAGCTTTATCATTTGTATGCAGAAAGTTTTGTTTTCGAGTATATAGAG
TAAAACGAAACCCAAGAGAAATGCGTGAGTCAgcagatattttgattttg
aatttggTATATGAGTTATGGGGAGTTATGATCACATGTTTCACATATAC
GTTATATGCTGTTCAACATTCGATACCTTTGAatccaaaaatcgaaaagg
aATACACTCAGGGACCAGTTATTCGAGATTTGATGTATCGAATCATTTTT
ACAATTTGTGTGGAAACAATTTCGTCTACCCTGGCTGTATTTTGGGTCAT
CAAGAAATCGAATTTCGCCATTATTAAGTTGTGGACTGTTAAATGGAAAT
TATATTGTTTCGTTCTTGCAATGAACGCAATTTTCCCGTTGATATTAGCT
TCCAAAACATTAGTAAACATAACAGAGGAAAGCTTCACCTTATTTTTGAT
AGACTCTGGAAGACAAGATTTAGCCTCGAAGTTGAAAATGTGTAACTATA
CTTCAAGACCATATTAAATGGCGGAAAACTTacaagaaagtgaagaaaat
ttaGTTACCAGTGTAACGAACGCAGATTTAGAAAGTTTCATAAACCATGA
TCCCGAAGATATTGTTTATAAGGAGTTCGAAAACGACCCAAATGTAGCGA
CAGATCCTCATTTTAAATGGAAATGTAtgaaaacagtttttttattGAAC
TTTTTTGGTGCATTTGGTGTTGGTCTGCTATCAATATTATGCGTCTATTT
CGACCTGAATTTCAGTAACCTTTGTGACTCTACGAAATGGATAAATTTAC
CACATAACATCAAAATTGCACACTTGTACAGTAAAGCTGCTTCTGATCAA
ATCTATCTATTTTGGTATGTCATAAACCTTTTGCTCGTTTTTGAAGTGTC
GAAAATTCAAAGACAAGTCTTGATACTGGCAAACTTATTGGCTGGTTGTG
TATGCACTATATGGAGACTATCAACTGTTGCCACAGATTTGTATGGGAAA
TCGTCACTTCTAGGAGCGCCGCAGTTCTTGATTTTCATCGTAATGAGCAT
ATATACAACAAGCGTTGTCTTAAAAGAAAGAATAACAACTGGTTTTTGGA
GACGTCTCATCGTGACGCTGAACGTCAACAACCAAATTATCATAGCTTTC
GTTTTTTATCTGGTCCATTTCTACGTCATCTTGCCGACATTCATCAAAGC
GTCAATCTACATTCGCCTGGCGATGGCATTCTTTATACCGGTTGTCGGAT
ACGGTGCACGAATTTTATGTCGTGTTTGTCTTCAACACATAAAGCATATA
CTACACCCAGGACGGTTGTATATTCTTTCAGCAGGGCTGCATGCATTAAC
AGTGACTTTATATCGGATCTTACAAGCCAGTGTCCAATCAACGTGGGCTT
TTATTGCTCTCGGATTGGCTCATTCTGTGGTTGGTTTCATCGATAAAATA
TCAGTTCTTTACCAACGATCAGCTTTATCATTTGTATGCAGAAAGTTTTG
TTTTCGAGTATATAGAGTAAAACGAAACCCAAGAGAAATGCGTGAGTCAg
cagatattttgattttgaatttggTATATGAGTTATGGGGAGTTATGATC
ACATGTTTCACATATACGTTATATGCTGTTCAACATTCGATACCTTTGAa
tccaaaaatcgaaaaggaATACACTCAGGGACCAGTTATTCGAGATTTGA
TGTATCGAATCATTTTTACAATTTGTGTGGAAACAATTTCGTCTACCCTG
GCTGTATTTTGGGTCATCAAGAAATCGAATTTCGCCATTATTAAGTTGTG
GACTGTTAAATGGAAATTATATTGTTTCGTTCTTGCAATGAACGCAATTT
TCCCGTTGATATTAGCTTCCAAAACATTAGTAAACATAACAGAGGAAAGC
TTCACCTTATTTTTGATAGACTCTGGAAGACAAGATTTAGCCTCGAAGTT
GAAAATGTGTAACTATACTTCAAGACCATATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017911-exon-sc0000279-1491911889:112377..112998 | TCONS_00017911-exon-sc0000279-1491911889:112377..112998 | Clytia hemisphaerica | exon |
| TCONS_00017911-exon-sc0000279-1510915933:112377..112998 | TCONS_00017911-exon-sc0000279-1510915933:112377..112998 | Clytia hemisphaerica | exon |
| TCONS_00017911-exon-sc0000279-1575043694:112377..112998 | TCONS_00017911-exon-sc0000279-1575043694:112377..112998 | Clytia hemisphaerica | exon |
| TCONS_00017911-exon-sc0000279-1491911889:114663..115746 | TCONS_00017911-exon-sc0000279-1491911889:114663..115746 | Clytia hemisphaerica | exon |
| TCONS_00017911-exon-sc0000279-1510915933:114663..115746 | TCONS_00017911-exon-sc0000279-1510915933:114663..115746 | Clytia hemisphaerica | exon |
| TCONS_00017911-exon-sc0000279-1575043694:114663..115746 | TCONS_00017911-exon-sc0000279-1575043694:114663..115746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000279 | supercontig | sc0000279:112377..115746 + |
Blast
The following BLAST results are available for this feature:
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