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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017902 ID=TCONS_00017902|Name=TCONS_00017902|organism=Clytia hemisphaerica|type=transcript|length=2438bpRun BLAST on NCBI protein sequence of TCONS_00017902-protein >TCONS_00017902-protein ID=TCONS_00017902-protein|Name=TCONS_00017902-protein|organism=Clytia hemisphaerica|type=polypeptide|length=624bp MKVSCVTAFILVIAAGCHIALADEFNNFKVCGKTSTGGKLQRIVGGENANRun BLAST on NCBI transcript from alignment at sc0000279:38371..48340+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00017902 ID=TCONS_00017902|Name=TCONS_00017902|organism=Clytia hemisphaerica|type=transcript|length=9970bp|location=Sequence derived from alignment at sc0000279:38371..48340+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000279:38371..48340+ >TCONS_00017902 ID=TCONS_00017902|Name=TCONS_00017902|organism=Clytia hemisphaerica|type=CDS|length=20625bp|location=Sequence derived from alignment at sc0000279:38371..48340+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00017902 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 318.161 bits (814), Expect = 2.601e-93 Identity = 207/592 (34.97%), Postives = 311/592 (52.53%), Query Frame = 2
Query: 176 CGKTSTGGKLQRIVGGENANQGELPWQIGVSNDGQVFCGATLISKKWAISAAHC--EIKPGNELI--IGASDLNSQKEVFKKRTVLRAFPHENYDSDTMENDIVLLELNNEVTFNDFIAPACIVDKSKHLVQGTTAVVSGWGTL-ESGGDQPEILQKAEVNIVSRDTCNSKYSSGITKVMLCAA-APGK-DSCQGDSGGPLVVDLRDKCGNDQYFLAGVVSFGSGCAHPDYPGVYADVAALRDWIDDKLASKGNVKPSTAEHTCGGXXXXXXXXXXXXXXXXXXXVGAA------DYFNDKGV--CGTNGDTHFMENIQRIVGGVPSKRGELPWQLGLRYGDGQKPYCGATLISKQWLITAAHC----KVKAGSQVILGAYDFGNGGNENESHRVKRTVAKVINHENYDDETYNNDIALVKLSAKIKYTKYIRPACIVEDREKLADDAEVVISGWGTTKSG-GSQPKVLQEAEVKIVNHGKCDDLYGRYKITDKMFCAAY-PGK-DSCQGDSGGPLVIDKKNNGRDQFYLAGVVSWGLGCANENYPGVYADVANLRNWIQGKLKSENVHPASGGIKPPVTGAPVTPVKPSPT 1885
CG RIVGG A+ GE PWQ + + + FCGA +I+ +W +SAAHC E + + + +GA+ L+ + + V++ H Y++DT + D+ +LEL + + F I P C+ + ++SGWG L E +PE+LQKA V ++ + C S Y +T M+CA GK DSCQGDSGGPLV + + ++FLAG+VS+G GCA PGVYA V LRDWI + T P+ SP +P A D+ + CG ME R+VGG + GE+PWQ+ L+ +G + +CGAT++ +WL++AAHC KV+ + A G GG+ VK + +V+ H Y+ + D+A+++L++ + + KYI+P C+ +K + +ISGWG T+ G ++P++LQ+A V I++ C LY + +TD+M CA + GK DSCQGDSGGPL ++ FYLAG+VSWG+GCA PGVY + L+ WI + S+ + + PP T + P T
Sbjct: 191 CGLQPAWRMAGRIVGGMEASPGEFPWQASLRENKEHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGATYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKKCLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLYGHSLTDRMVCAGYLDGKVDSCQGDSGGPLVCEE----PSGRFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEATTKASMPLAPTMAPAPAAPSTAWPTSPESPVVSTPTKSMQALSTVPLDWVTVPKLQECGARPA---MEKPTRVVGGFGAASGEVPWQVSLK--EGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAHLGTASLLGLGGSP-----VKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYN-FSLTDRMICAGFLEGKVDSCQGDSGGPLACEEAPG---VFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSSQPLP-----MSPPSTTRMLATTSPRTT 759 HSP 2 Score: 308.145 bits (788), Expect = 8.948e-90 Identity = 197/581 (33.91%), Postives = 298/581 (51.29%), Query Frame = 2
Query: 164 NFKVCGKTSTGGKLQRIVGGENANQGELPWQIGVSNDGQVFCGATLISKKWAISAAHCEIKPGNELI---IGASDL----NSQKEVFKKRTVLRAFPHENYDSDTMENDIVLLELNNEVTFNDFIAPACIVDKSKHLVQGTTAVVSGWG-TLESGGDQPEILQKAEVNIVSRDTCNSKYSSGITKVMLCAA-APGK-DSCQGDSGGPLVVDLRDKCGNDQYFLAGVVSFGSGCAHPDYPGVYADVAALRDWIDDKLASKG--NVKPSTAEHTCGGXXXXXXXXXXXXXXXXXXXVGAADYFNDKGVCGT--------NGDTHFMEN------------------IQRIVGGVPSKRGELPWQLGLRYGDGQKPYCGATLISKQWLITAAHCKVKAGSQVILGAYDFGNGGNENESHRVKRTVAKVINHENYDDETYNNDIALVKLSAKIKYTKYIRPACIVEDREKLADDAEVVISGWGTTKSGGSQPKVLQEAEVKIVNHGKCDDLYGRYKITDKMFCAAYP--GKDSCQGDSGGPLVIDKKNNGRDQFYLAGVVSWGLGCANENYPGVYADVANLRNWI 1786
+ CG K R+VGG A GE+PWQ+ + + FCGAT++ +W +SAAHC E + +G + L S ++ +R VL H Y+ ++ D+ +LEL + + FN +I P C+ + G ++SGWG T E +PE+LQKA V I+ + TC+ Y+ +T M+CA GK DSCQGDSGGPL + ++LAG+VS+G GCA PGVY + L+ WI + ++S+ PST T P PS P GAA + T G T F + + RIVGG + RGE PWQ+ L + ++ CGA L++++WL++AAHC G A+ G +++R VA++ H Y+ T + D+AL++L+ ++ ++ +RP C+ E + D VI+GWG+ + GGS + LQ+A V++++ C Y +I+ +M CA +P G DSC GD+GGPL ++ +GR + L GV SWG GC ++PGVY VA +R WI
Sbjct: 488 KLQECGARPAMEKPTRVVGGFGAASGEVPWQVSLKEGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAHLGTASLLGLGGSPVKIGLRRVVL----HPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPVGRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCSVLYNFSLTDRMICAGFLEGKVDSCQGDSGGPLACEE----APGVFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILEIMSSQPLPMSPPSTTRMLATTSPRTTAGLTVPGATPSRPTPGAASRVTGQPANSTLSAVSTTARGQTPFPDAPEATTHTQLPDCGLAPAALTRIVGGSAAGRGEWPWQVSL-WLRRREHRCGAVLVAERWLLSAAHCFDVYGDPKQWAAF-LGTPFLSGAEGQLER-VARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPPDGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFYP-VQISSRMLCAGFPQGGVDSCSGDAGGPLAC-REPSGR--WVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWI 1053 The following BLAST results are available for this feature:
BLAST of TCONS_00017902 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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