TCONS_00017895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017895
Unique NameTCONS_00017895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017895 ID=TCONS_00017895|Name=TCONS_00017895|organism=Clytia hemisphaerica|type=transcript|length=425bp
TAGTTCTCTGGCGAGCAGCGGTCTTTGTTTCCACCTTTGTAGATTGGTGA
TACGTGGGCATGAAGCCAGTCTTTTGGAAGTTCTCCTTTTTCGAGTGAAG
TTGAGAATATGAGTTCTAAAGCAGGTGTAAGTTCCTCAGCAAACTCTTTC
ATGAATCGTGAAGAAATGTTGTCTGGACCAGGGGCTTTATTTGGTTGCAG
TTTATTTAGAAGAGATTTGATGCCATTAGAAGAAAATCATTATGTCGCGC
ATTGTATCTTTGATCTCTGGTGTTTCAATTTTTGGGTTGTTATTGTCGGG
TACTGAGAATACACTACAGTATTGCTGATTAAGGACATTAGCTTTTCCTG
AATCGTCAATAATAAAGACCCCCTTGTTGTCCTTTAGTGCTGATATTGAA
ATGCTGTCTTGACGTTTGCTTTTCA
Run BLAST on NCBI

transcript from alignment at sc0000278:222447..222871

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017895 ID=TCONS_00017895|Name=TCONS_00017895|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at sc0000278:222447..222871 (Clytia hemisphaerica)
TGAAAAGCAAACGTCAAGACAGCATTTCAATATCAGCACTAAAGGACAAC
AAGGGGGTCTTTATTATTGACGATTCAGGAAAAGCTAATGTCCTTAATCA
GCAATACTGTAGTGTATTCTCAGTACCCGACAATAACAACCCAAAAATTG
AAACACCAGAGATCAAAGATACAATGCGCGACATAATGATTTTCTTCTAA
TGGCATCAAATCTCTTCTAAATAAACTGCAACCAAATAAAGCCCCTGGTC
CAGACAACATTTCTTCACGATTCATGAAAGAGTTTGCTGAGGAACTTACA
CCTGCTTTAGAACTCATATTCTCAACTTCACTCGAAAAAGGAGAACTTCC
AAAAGACTGGCTTCATGCCCACGTATCACCAATCTACAAAGGTGGAAACA
AAGACCGCTGCTCGCCAGAGAACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010032XLOC_010032Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017895-exon-sc0000278-1491911889:222447..222871TCONS_00017895-exon-sc0000278-1491911889:222447..222871Clytia hemisphaericaexon
TCONS_00017895-exon-sc0000278-1510915933:222447..222871TCONS_00017895-exon-sc0000278-1510915933:222447..222871Clytia hemisphaericaexon
TCONS_00017895-exon-sc0000278-1575043694:222447..222871TCONS_00017895-exon-sc0000278-1575043694:222447..222871Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:222447..222871 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.880514	0.96472	0.54699	0.921481	0	1.47856	0.117558	0.930895	1.88996	9.37211	1.02031	3.04213	0.833764	1.54826	0.997114	0.620056	0.257412	0	0.406584	1.39896	1.04932	1.5413	0.342501	0.289603	1.09007	0.163807	0	0.52359	0.241037	1.52755
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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