TCONS_00017831 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017831
Unique NameTCONS_00017831
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length252

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017831 ID=TCONS_00017831|Name=TCONS_00017831|organism=Clytia hemisphaerica|type=transcript|length=252bp
AAAAGTGTTTCTGTTAAATCAGGTAAGTAATGTGTTTTCAAAGACATGAA
TGCTTCAGGCTCTAGTAAGGGTACAGTAGCAAATTACCTTGTTTccgtga
aaattttcaaatgaaattgaTTCTTCCTTCGTAAAAGGAAGGAAAATATT
ATACCAAATTATTCAAATAGTCCAGCCCAGCCCAGAtcattgaattgaat
tgaattgaataataTATTTACTACTCGGTTAGGTAGAGGGATCACCCCTA
AT
Run BLAST on NCBI

transcript from alignment at sc0000278:39488..39739+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017831 ID=TCONS_00017831|Name=TCONS_00017831|organism=Clytia hemisphaerica|type=transcript|length=252bp|location=Sequence derived from alignment at sc0000278:39488..39739+ (Clytia hemisphaerica)
AAAAGTGTTTCTGTTAAATCAGGTAAGTAATGTGTTTTCAAAGACATGAA
TGCTTCAGGCTCTAGTAAGGGTACAGTAGCAAATTACCTTGTTTccgtga
aaattttcaaatgaaattgaTTCTTCCTTCGTAAAAGGAAGGAAAATATT
ATACCAAATTATTCAAATAGTCCAGCCCAGCCCAGAtcattgaattgaat
tgaattgaataataTATTTACTACTCGGTTAGGTAGAGGGATCACCCCTA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010004XLOC_010004Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017831-exon-sc0000278-1491911889:39488..39739TCONS_00017831-exon-sc0000278-1491911889:39488..39739Clytia hemisphaericaexon
TCONS_00017831-exon-sc0000278-1510915933:39488..39739TCONS_00017831-exon-sc0000278-1510915933:39488..39739Clytia hemisphaericaexon
TCONS_00017831-exon-sc0000278-1575043694:39488..39739TCONS_00017831-exon-sc0000278-1575043694:39488..39739Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000278supercontigsc0000278:39488..39739 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.742833	0	3.3643	1.64572	1.00175	0.791598	1.91006	2.68226	2.50389	2.3261	0.75259	2.96834	0	3.07836	2.53083	0.905323	3.9035	3.42939	0.789648	1.65262	3.59107	4.20383	0.851718	0	2.39264	0.711792	1.01857	0	0.824487	0.840022
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017831 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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