TCONS_00017784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017784
Unique NameTCONS_00017784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017784 ID=TCONS_00017784|Name=TCONS_00017784|organism=Clytia hemisphaerica|type=transcript|length=1519bp
ACAGATTGTGTATCCAAATACACATACATACATACTCGCATGACACACTG
AAACAAATCTACATCAAAACACATCCAAagTAGGAACAAAGCATCATGGC
AAGACATCCAAAGAGAAAAGCGGGGAAGTACGGAGCTCGTCAATACCAGA
CAAAGTATGACCCAAACGATGGGACAATGGAGAGGGCGTTAACAGAAATC
AGACAATCACCCAAAGAAAGTTGGACGCCCGACCGTGCTCAGTCATGATG
AAGAGAAGGCACTGGCTTCAATGGTAGAGCTGACATGTGAGTGGCAGGTA
CCCATGGACAGAACAGACCTACGATACTTTGTGCAAGACTACCTAAACAA
AAAGGGCGTAAAGTTGTTCAGAAATGAAAACCTCCCCAGCATGGATTGGA
CCGAACGCTTTATTCGTGACTTCAAACTCAAACTACGAAGTGTAGACAAC
GTCAAACCGAACAGAAGTGGGTTAAGTTTGGAAGatgtaaacaaattttt
catcaaTCTGGAAAAAGAACTCGACGGGGTACCGCCAGAGAATATTTGGA
ATTTTGACGAGACTAATTTCACTGACGATCCAggaaagaaaaagGTCATT
GTATCTAAGAGGAGACGGAGAGTTGAACGATGCATGCCTCACTCGAAAAC
TTCATTTTCAGTCATGTGTTGCGGCAACCCGAAGGGCGAGTTCATGCCAC
CCATGATTGTATATAAATCGAAATGTATGTGGGAAAACTGGAAGAAACAC
GGGCCAAGAGGTGCTTCGTATACTATGAGTAAAAATGGTTGGTTTGAGGC
ACAATCCTTCACCAAATGGTTTATGGACCTAGCGTTACCACGTCTAAAGG
AGTTGACTGGAAAGAAGGTCATCATTGGTGACAATCTTGGGTGTCATTAC
ACTGCTGACGTCTTGATTGAATGCCGCCGTCACAACATTGCATTCATTCC
GCTCATTCCGAACACCACCCACATTTCACAACCCCTTGATGTTGCCGTTT
TCTCCCCAGTAAAGAAGTTTTGGCGGCAAAGCTTGGAGGCATGGAGACGG
GAAACCAGAATTAAGGATGACTTACAAAAAACGTGCTTTCCGGCAATTCT
AAGGAGTACTTTTATCAGGATAGAACGCGAGCTTGGAACTGCCCTAGAAT
CTGGATTTCGAACGTGTGGCATTCACCCACTGGACCGTACTAAGATAGCA
AAGAAGATACCTTCACGTGTTCATGTTGTTGATGGCTTTGATTTAAATAT
ATTCAATGATAGTGTTCTAGACTTTCTCGAAAACAACCGAACATGTTCTG
TAACCAGTGAGTACAcgttcttataagcatatttcctttttttaaacagA
CTCGGTTACGCCTAGCTATATTGTGAATTGAATTCTTCCGAAAAAAGGGA
GTCATTAAAATGGAAAAGATAAACGAAAGTTACACCCAAGTATACACCAA
TCATCAAGCTTACAGATATGCTTATTTGTTCACCAAATCCACTACAAAGA
TTTTAACCCGGGTGGGGAG
Run BLAST on NCBI

transcript from alignment at sc0000276:329962..334091+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017784 ID=TCONS_00017784|Name=TCONS_00017784|organism=Clytia hemisphaerica|type=transcript|length=4130bp|location=Sequence derived from alignment at sc0000276:329962..334091+ (Clytia hemisphaerica)
ACAGATTGTGTATCCAAATACACATACATACATACTCGCATGACACACTG
AAACAAATCTACATCAAAACACATCCAAaggtaagaaaattttatttatc
cTTTTAAATTTACATGTAAATTATTAGCTATAGCTTTGGGCTGAAATGTT
TATTTTAGTGGGTCAATCATGTTTTCGTGACATAAGCCACCCCTGTTTCA
GTTACACTTAATTCTACCTAAATTGCAGGGCCTGTATATTTGTTGTGGAT
GTATGGGCTTATTTCACTTAGCCTGTACCGATAAAAGTATTGGGGATTTG
AAAAGAGTTTTTTATTGTTACCTGATTCCAGGGCAAACCATGATCTAATA
CATACTTTGCAGAAACCCATGTCTATCATCCAGGTGTAtggatattttct
tttttctttgttagcCTGTCCTCCAATAAATTATAGCGCTTACATGTTGT
cttacaaaaatttaatttgggcACCACAAGTGAAGTTTGTCCCAAATGTG
TTTTGGTAATTTTGTAATCCACTATATCTTAACAAGTTGTGTACAGTCAG
CCTGTAATACAATGCTAAAGGTGAGGCGTTCCCTTGGGACGGCCTTGATC
AGTCGCAGTGTGTTCGTGCCGCAAGGGAATAAGAGTGCCGGTGTAATCGA
AAGTGACCGACTCTTCTGCGTGGCGCGAACGACCATTGTCGTTCTCTCAT
ACGTAGCACGTTCACACGCTATGATTAATCAAGAGCCATCGAGCCAATGC
TGGCAAAAATGAATGGACACAAATTCTTTATGATTTATCTCCATTGTTGC
AGCAATATAACAAAACTATATTTCCTTTGCAGTAGGAACAAAGCATCATG
GCAAGACATCCAAAGAGAAAAGCGGGGAAGTACGGAGCTCGTCAATACCA
GACAAAGTATGACCCAAACGATGGGACAATGGAGAGGGCGTTAACAGAAA
TCAGGTTGGGAAAAAAAGTCAAAGATATCGCGCTAAAATATAAAATCCCA
CGGTCCACTCTGTATGACAAAATAAAAGGTAATATTTACGATACCCGAGA
AAAAGAGGGAACTTATTATAAGGATttcatttaagggctctgaccatagt
cggtaaattgattttagtatttgaacataacaGTTATATCTTAGGTTCTT
TAagacttttaacaaagaattgcctttataaatttataaaatttgccttt
ataaaattattttcctcTGCATACTCTCAGACAATCACCCAAAGAAAGTT
GGACGCCCGACCGTGCTCAGTCATGATGAAGAGAAGGCACTGGCTTCAAT
GGTAGAGCTGACATGTGAGTGGCAGGTACCCATGGACAGAACAGACCTAC
GATACTTTGTGCAAGACTACCTAAACAAAAAGGGCGTAAAGGTTAGGGAA
ATATTCTGATGTGTTTTTAGGGGAAATGAACTGCCAGAATTGTGAAGAAT
TTTATTAAACCAATTTAcattattatgtttttttataagcattgaagTTA
TAAACATCTAGAATCAGTAATGGCAATAATTTAAGCATATACTAGGCATT
TCTCGAGACTAAGAAAATTATCCTGATTTGGGCTGGGTTTCACGGATTTT
TCCTAACATTTTGCTCGGGGTATAAGCACTCTTACGAACAGTATTCGGCC
TTGCCACGCCCTCAACCTAGGCATCGCTGAACCTATACGCTTATATAAAA
CATGTATATATTGTCTTACAGTTGTTCAGAAATGAAAACCTCCCCAGCAT
GGATTGGACCGAACGCTTTATTCGTGACTTCAAACTCAAACTACGAAGTG
TAGACAACGTCAAACCGAACAGAAGTGGGTTAAGTTTGGAAGatgtaaac
aaatttttcatcaaTCTGGAAAAAGAACTCGACGGGGTACCGCCAGAGAA
TATTTGGAATTTTGACGAGACTAATTTCACTGACGATCCAggaaagaaaa
aggttaaaacATTTCTGAATTATTGATCAAATCTGACCGTTTTTTACATC
AGAAAAGGTTTTTTAACCCCTTCTCCTGTGACCCAAATGCAAATTCGTAC
CTTTTCAGATAAAATCAGGCAAATAACCAAATATAGGGATTTATAATCTT
CGGTTTTACAAAGGTGGAGATTTTATACTCAATTCCTAATCATAGGTTAa
ctaattttatcaaaagtttaaTTGAATTCTCGTACCTTTTGTGTAACTGT
AGATGTTAGTATTCGTGTCAGAAAGTTCAGGATTACATTGATGTTCAATT
TTTTACTTAGCTAACCTAGCTAGCCCATTAAGATCTGACCGCGTCCATTA
CACAGGAGTCTTTTTGGATTGTGAGCACCATATCTCTGTTTCACAGGGCA
CGCTAATTAACTTTATCGACATATATTATCTCGTCCAGGTCATTGTATCT
AAGAGGAGACGGAGAGTTGAACGATGCATGCCTCACTCGAAAACTTCATT
TTCAGTCATGTGTTGCGGCAACCCGAAGGGCGAGTTCATGCCACCCATGA
TTGTATATAAATCGAAATGTATGTGGGAAAACTGGAAGAAACACGGGCCA
AGAGGTATGTATGTTTCTATGTAGTAACTGACTCCTCCTATTTCATATTC
GTCAACAATAAGGTTTTTTGCGTAGTTATTTTACCGTTCACATAGCCTGC
CTTAGCATTGATTTACAGACAATACCTGAGTGACTTAATTGTGggctatc
cccattgaaaattcaatgaaaaaaattggactccaaaaccatccccactg
taaattttgagctggaaacaatagattttctatccatATTGGgctttcga
tagaaattttcatccccaccgtgggaaaaggttccaccggggcactgaga
caggggtgtattatagtggaaataacgtcttatcacattACTCTAAGGTG
CTTCGTATACTATGAGTAAAAATGGTTGGTTTGAGGCACAATCCTTCACC
AAATGGTTTATGGACCTAGCGTTACCACGTCTAAAGGAGTTGACTGGAAA
GAAGGTCATCATTGGTGACAATCTTGGGTGTCATTACACTGCTGACGTCT
TGATTGAATGCCGCCGTCACAACATTGCATTCATTCCGCTCATTCCGAAC
ACCACCCACATTTCACAACCCCTTGATGTTGCCGTTTTCTCCCCAGTAAA
GAAGTTTTGGCGGCAAAGCTTGGAGGCATGGAGACGGGAAACCAGAATTA
AGGATGACTTACAAAAAACGTGCTTTCCGGCAATTCTAAGGAGTACTTTT
ATCAGGATAGAACGCGAGCTTGGAACTGCCCTAGAATCTGGTTAGTATGC
ATTTTTATATATGATAGCGgttgattttcataaaaatgccttttttatgg
gacaagctggagtttttactagctcttatttgatttggttggttgttaag
atgtaataaaagaatcttattaccttttctaaagaacgcgtcatctctat
cgcTTTacatgaccaattattaaagtatcttgtaaaaactccaaggcatc
tcttTTTTATGGAGACTTGATAATTTTCCCGTCAGTGATTCTTACTTCTT
AATTGGACGTGCAAATACAAATTATTTTTGGGAGTCAACGTAATGAACTT
AGAGTTTAAAAAGATACGACAACGGTTTATGCCGACGGGCCGGATAAATT
GTGGATTTTTGAGTGTTAAATTAGGGTGAAATTTGCTCTTCTACCTTCGT
CTAATGAAGCCATGAACAGTCGATATCACATTTTCATGAATTCTATCATT
CCACGTCATTTTAGGATTTCGAACGTGTGGCATTCACCCACTGGACCGTA
CTAAGATAGCAAAGAAGATACCTTCACGTGTTCATGTTGTTGATGGCTTT
GATTTAAATATATTCAATGATAGTGTTCTAGACTTTCTCGAAAACAACCG
AACATGTTCTGTAACCAGTGAGTACAcgttcttataagcatatttccttt
ttttaaacagACTCGGTTACGCCTAGCTATATTGTGAATTGAATTCTTCC
GAAAAAAGGGAGTCATTAAAATGGAAAAGATAAACGAAAGTTACACCCAA
GTATACACCAATCATCAAGCTTACAGATATGCTTATTTGTTCACCAAATC
CACTACAAAGATTTTAACCCGGGTGGGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009968XLOC_009968Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017784-exon-sc0000276-1491911889:329962..330041TCONS_00017784-exon-sc0000276-1491911889:329962..330041Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1510915933:329962..330041TCONS_00017784-exon-sc0000276-1510915933:329962..330041Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1575043694:329962..330041TCONS_00017784-exon-sc0000276-1575043694:329962..330041Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1491911889:330794..330915TCONS_00017784-exon-sc0000276-1491911889:330794..330915Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1510915933:330794..330915TCONS_00017784-exon-sc0000276-1510915933:330794..330915Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1575043694:330794..330915TCONS_00017784-exon-sc0000276-1575043694:330794..330915Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1491911889:331192..331352TCONS_00017784-exon-sc0000276-1491911889:331192..331352Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1510915933:331192..331352TCONS_00017784-exon-sc0000276-1510915933:331192..331352Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1575043694:331192..331352TCONS_00017784-exon-sc0000276-1575043694:331192..331352Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1491911889:331683..331913TCONS_00017784-exon-sc0000276-1491911889:331683..331913Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1510915933:331683..331913TCONS_00017784-exon-sc0000276-1510915933:331683..331913Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1575043694:331683..331913TCONS_00017784-exon-sc0000276-1575043694:331683..331913Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1491911889:332350..332515TCONS_00017784-exon-sc0000276-1491911889:332350..332515Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1510915933:332350..332515TCONS_00017784-exon-sc0000276-1510915933:332350..332515Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1575043694:332350..332515TCONS_00017784-exon-sc0000276-1575043694:332350..332515Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1491911889:332859..333251TCONS_00017784-exon-sc0000276-1491911889:332859..333251Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1510915933:332859..333251TCONS_00017784-exon-sc0000276-1510915933:332859..333251Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1575043694:332859..333251TCONS_00017784-exon-sc0000276-1575043694:332859..333251Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1491911889:333726..334091TCONS_00017784-exon-sc0000276-1491911889:333726..334091Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1510915933:333726..334091TCONS_00017784-exon-sc0000276-1510915933:333726..334091Clytia hemisphaericaexon
TCONS_00017784-exon-sc0000276-1575043694:333726..334091TCONS_00017784-exon-sc0000276-1575043694:333726..334091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000276supercontigsc0000276:329962..334091 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83373	0.969848	0.639784	0.133857	2.7369	2.05387	5.96478	6.28819	3.91651	6.05282	8.09975	4.76173	5.31781	3.59252	3.77849	5.21634	4.29598	5.33705	5.56103	8.95495	4.1043	4.56458	1.49234	3.33344	5.63677	4.55571	5.85463	6.34785	6.24316	3.42115
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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