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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017735 ID=TCONS_00017735|Name=TCONS_00017735|organism=Clytia hemisphaerica|type=transcript|length=819bp
tttaggaaaaaattaAACAGCAATAACAAGTTGATGATAAATATTTTATA
ACAATCAATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATCGAAAC
AAATACTATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAA
AGTTTACTATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAAT
CACCAATACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGC
TACAAGAATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGT
TTACTGCTAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTAC
CAACGACTTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAG
ACCTTATCTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATA
ACGCAAGAAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacag
AATTGCAATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGAGGAG
TCAACGATTGGTTGATGAGCTGTTTCCATGGAGATACGAAACCTATCAAA
CCTCTTGAACCAGGGGTTGATAATGGTTTCGGACAAGGTCGAATATGTAC
TTTAAAAGAACCACTGGCTATTGAAGAAGTTGTACAAAAAGTGAAAACAC
ACCTTGGGTTACCTTATTTGAGATTAGCTACTGCACCTGGAGTTGAGCAG
AGCTCCTGCTCCAacattatctggcacccagatggttaAACTTTCATCCA
ACATTCTATAGCTctaaag Run BLAST on NCBI transcript from alignment at sc0000274:225048..228026+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017735 ID=TCONS_00017735|Name=TCONS_00017735|organism=Clytia hemisphaerica|type=transcript|length=2979bp|location=Sequence derived from alignment at sc0000274:225048..228026+ (Clytia hemisphaerica)
tttaggaaaaaattaAACAGCAATAACAAGTTGATGATAAATATTTTATA
ACAATCAATGAAATTTCAAATGTCATTTATTGGCAATCTTCTATCGAAAC
AAATACTATTTTCAACTACAAACAAATTTGCCATCAATTCCATCAAACAA
AGTTTACTATTAACACAACAAAGCAAACGCCTAATGTCTGGTCAAGTAAT
CACCAATACAGCAGACACTGGTCTACCTTTAAAAGAAGTGCTCCACCAGC
TACAAGAATATGCGTCACCCTCCATCGCAGAGGGTTGGGATAACGTTGGT
TTACTGCTAGAACCCTCCTCCCCACATACAGTCAAACATTTATTCCTTAC
CAACGACTTGACAGAAGACGTATTAGACGAAGCTGTCTCCAAGAAGGCAG
ACCTTATCTTATCTTACCACCCACCCATCTTCTCCAGCATTAAAAGGATA
ACGCAAGAAGCCTGGAAGAATCGACTTAtcatcaaatgttttgaaaacag
AATTGCAATCTACTCCCCACATACTTCCTATGATGTCGTCAAAGGTGAGA
ATTGATTTTATGATTCCTTTATTTTTGTGACGTTTTGCTTAAATAAACTA
TTACAAAGAAATTaggttttttctgtttttcaatGCATGACAGATTTTTT
GCAGATAAGTTCAATTCCGACACTAAtataatgcttaaaaaagcGTTAAG
CTGTCGATGTTCCTCAGTTGCTTAAAACCAACCTAATTTGTGTAGCGAGT
TGGTTTGATTTGTTTGACTACAAATATTTTGTTACAATCTTTTGATTCAT
ATTTACAGTGCTATATCTTTTGTATTCAGGAGGAGTCAACGATTGGTTGA
TGAGCTGTTTCCATGGAGATACGAAACCTATCAAACCTCTTGAACCAGGG
GTAAGAATTTATGTtccctttttaaaaattttcttaaacttATCAATAAG
AAGTTGAAGGGGTTGCAgatgaaattttatttgataCATAAAAAGGTTCC
ATCTAACCGAATTTTAAAAgagcgccactctttctctctAGATTGCTCTA
CTTACCCTTGCTCCTTCCCTTTAATTACTGAGCATCAAGTAGAGAAGCAT
TAAGTACCATTTAGAAAACTTTGTTAAGATTTTGccagggattgaaccca
cgaccctGCGCACCGTAGCTTTACTTTTGCGCTACGGTTCGCATCATTTA
CTAAAATTTCAAAGCTGATTTGTAGTGTAAAGTTAATTTACCATCTCAga
cgaaaaaccttgctttgaccactgaacTAACCTAGAGCAATTGGTTGCGT
TGAAATGCTTGTGAAAGCTTTTGGACCTGTCATCACTAGAATTAATTAGT
CCACGGCTACCGAAGACAGCCATGATatggataaaagaaaaaaatgcaaa
aactttTCAACTACAACATCCACGTTTCTTTTTGTATTCACAGGTTGATA
ATGGTTTCGGACAAGGTCGAATATGTACTTTAAAAGAACCACTGGCTATT
GAAGAAGTTGTACAAAAAGTGAAAACACACCTTGGGTTACCTTATTTGAG
ATTAGCTACTGCACCTGGAGTTGAGCAGGTATGGTGTATCATTTTTAAAT
GTTATGTTAATCATAATTGCATAAACGTCCCCTGCTACACTCTGATGCTT
AATAAATGGCCATCCCGCTCattaatatttcaatttttctcaacCCCCAC
CAAGGACCACCTCCCCCCTgtttattagttttttaaagtactttcagctg
tcaaaagaaGAGCCCTTTATTTTGCTAAAAACGAGTTTTAGTATAATTAC
cttgtatagaccttttcataaattacgtcacgaacatcacttacctcgtA
TTCGGACAATTACCATGGTGGTTATgcctcttgagacattaaatgatttt
ttttatgaataggaagtagttttgataaaatctgctgggatttaatcacc
atggcaataatttcaaaacgaggcaagtgatgttcgtaatgtaatctatg
aaaaggtctatttagagGTACTATTTCAACCCCGGCAATTATGACCCTGA
TTTAAAAGTTGGTTGTAACACCAACAGTGCCTTGAATTGAATCGGTTCGC
CAAGCGCCTGAATATTTAGCCGATCAATTATTAGACAGTAGGCCTTTTTA
ATATTACTTTGCGAACATTTACTGCctctttttgagtttatatGGTAATT
GAATCCTTAAAAGGGATCCATCAAAATTCGGCTCTGttggaaaaaattta
attttaagtcTCGTGAGATTGAAATACTTCATATTATTTGTCtgaaaacg
aggcagtcgttctCCGCGACGTACCGTAGTTTATATTTTGTTGCTATATT
TTGCGTATCCATGCTGTAGCAACAtcctcttataaaaaataaaacagccG
TAATGACAGCTGCAAACTCTGGTGATTGTCAGGGGTTagcctttcttaat
atatctaacctaaaatttaaagtaagtaagtaagtgcGAGCGCAAACGCA
AACTAAATTAGGAAATCAAACCGGAAAGATCGGGAAATGGAATCCGACTA
TCGTGATTGATCAGATTAAAACACGCACAATTataaatgaaaaacactga
ttttataAAACTCCTTAACCGGAGTTTAAGAAGAGTGTTCTTTCTACGTC
AAACTTTCGGTCGTACTTTTTATTCAAACACTGTCTTCCCTTGATATGGT
TTGCACCACCCTGAAGCTGTTACtattataattattattaaAGTTTTCAT
TCTTCTTATCATTCTTACTACGCACACTGATTCGAATTCTCCATGACATA
AAAGCAAGTTTATGTTTTCGAAGTAAATCGAAGGAGAATTTATGTCGAAG
TTATGTAGATATGAAGACTACACTGTATCACGATTTCaacttcttcattt
tctctATCAGAGCTCCTGCTCCAacattatctggcacccagatggttaAA
CTTTCATCCAACATTCTATAGCTctaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017735-exon-sc0000274-1491911889:225048..225591 | TCONS_00017735-exon-sc0000274-1491911889:225048..225591 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1510915933:225048..225591 | TCONS_00017735-exon-sc0000274-1510915933:225048..225591 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1575043694:225048..225591 | TCONS_00017735-exon-sc0000274-1575043694:225048..225591 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1491911889:225877..225947 | TCONS_00017735-exon-sc0000274-1491911889:225877..225947 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1510915933:225877..225947 | TCONS_00017735-exon-sc0000274-1510915933:225877..225947 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1575043694:225877..225947 | TCONS_00017735-exon-sc0000274-1575043694:225877..225947 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1491911889:226491..226625 | TCONS_00017735-exon-sc0000274-1491911889:226491..226625 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1510915933:226491..226625 | TCONS_00017735-exon-sc0000274-1510915933:226491..226625 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1575043694:226491..226625 | TCONS_00017735-exon-sc0000274-1575043694:226491..226625 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1491911889:227958..228026 | TCONS_00017735-exon-sc0000274-1491911889:227958..228026 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1510915933:227958..228026 | TCONS_00017735-exon-sc0000274-1510915933:227958..228026 | Clytia hemisphaerica | exon |
| TCONS_00017735-exon-sc0000274-1575043694:227958..228026 | TCONS_00017735-exon-sc0000274-1575043694:227958..228026 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000274 | supercontig | sc0000274:225048..228026 + |
Blast
BLAST of TCONS_00017735 vs. Swiss-Prot (Human)
Match: NIF3L (NIF3-like protein 1 OS=Homo sapiens GN=NIF3L1 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 7.728e-49 Identity = 79/137 (57.66%), Postives = 99/137 (72.26%), Query Frame = 1
Query: 196 VITNTADTGLPLKEVLHQLQEYASPSIAEGWDNVGLLLEPSSPHTVKHLFLTNDLTEDVLDEAVSKKADLILSYHPPIFSSIKRITQEAWKNRLIIKCFENRIAIYSPHTSYDVVKGGVNDWLMSCFHGDT-KPIKP 603
+I N++ + + LK +L L ++AS S AE WDNVGLL+EPS PHTV LFLTNDLTE+V++E + KKADLILSYHPPIF +KRIT WK RL+I+ ENR+ IYSPHT+YD GVN+WL T +PI P
Sbjct: 19 LICNSSRSFMDLKALLSSLNDFASLSFAESWDNVGLLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLVIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHP 155
The following BLAST results are available for this feature:
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