TCONS_00017706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017706
Unique NameTCONS_00017706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017706 ID=TCONS_00017706|Name=TCONS_00017706|organism=Clytia hemisphaerica|type=transcript|length=884bp
TTCATCAGTTATATTTTTATCCGTGTGTGCTTTAGACAAAACTTTGCACA
AAAAAATGGGTCGTTAACGTTTTCGCTTGAATATATGGCAATAATCTGCC
CTTCACTAATGGCATCTCCAAATTCTGTGTGTTTGAATAATTCATACTCA
TACATATCAGAACCAATTTCACTATCATTTTCACGATCACTTTCACAATC
ACTTTCATCACTCTCTTCCATCAAATTTTCTTCACTGACACTATCATTGG
CTCCAGTGGAACTGTCTTAACAGCTTATAAAATTACCCATCATACATTTT
TGACAAGAGCAAATCTCCTCTTTCATTTGAATCTCGCCAGAAGAAAAACA
CTTCCTACTATCACATCAAGATATTCATAATGCTTACGGTCGTCATCTTA
CATCGGATTTGAAATGAAATCATAGACTTTCTGAGCGCTGTCATAAATGA
TATCATCGGTGGCAATAGCCTTTCTCAGGGGTGTTTTCAGCCCAAACCCA
CTCATCAACCCAAAAATCCACCAACCCTTTTCCATGACCTTTAACACCAT
AATAGTAGTAGATGAAAACTTTGTAAAATCTGTGTAAAATTTTGTACACT
TGCTTCTTGAGTGAAACCCCAAAGGTATGTACCTTTTATTCTCTATAGAT
AgttgtttttaggctttttacagattcgattttttgtcaaagaatGATAA
TGATTTAACAAATTTGccctttttttttgcttttttgcgCATTTTGTTAC
AAAGTTATGCATAGGAGCTTGTCTTGATCGTTACTTTTATTCGCAAGTAT
GTACGGCGAGTTCCTCTCTTCATCTGTGGAAAATATCAGTTCTGGGTTTT
CTCTTAACAGACATGCGACATTGATTAGGATTCC
Run BLAST on NCBI

transcript from alignment at sc0000273:38145..39028

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017706 ID=TCONS_00017706|Name=TCONS_00017706|organism=Clytia hemisphaerica|type=transcript|length=884bp|location=Sequence derived from alignment at sc0000273:38145..39028 (Clytia hemisphaerica)
GGAATCCTAATCAATGTCGCATGTCTGTTAAGAGAAAACCCAGAACTGAT
ATTTTCCACAGATGAAGAGAGGAACTCGCCGTACATACTTGCGAATAAAA
GTAACGATCAAGACAAGCTCCTATGCATAACTTTGTAACAAAATGcgcaa
aaaagcaaaaaaaaagggCAAATTTGTTAAATCATTATCattctttgaca
aaaaatcgaatctgtaaaaagcctaaaaacaacTATCTATAGAGAATAAA
AGGTACATACCTTTGGGGTTTCACTCAAGAAGCAAGTGTACAAAATTTTA
CACAGATTTTACAAAGTTTTCATCTACTACTATTATGGTGTTAAAGGTCA
TGGAAAAGGGTTGGTGGATTTTTGGGTTGATGAGTGGGTTTGGGCTGAAA
ACACCCCTGAGAAAGGCTATTGCCACCGATGATATCATTTATGACAGCGC
TCAGAAAGTCTATGATTTCATTTCAAATCCGATGTAAGATGACGACCGTA
AGCATTATGAATATCTTGATGTGATAGTAGGAAGTGTTTTTCTTCTGGCG
AGATTCAAATGAAAGAGGAGATTTGCTCTTGTCAAAAATGTATGATGGGT
AATTTTATAAGCTGTTAAGACAGTTCCACTGGAGCCAATGATAGTGTCAG
TGAAGAAAATTTGATGGAAGAGAGTGATGAAAGTGATTGTGAAAGTGATC
GTGAAAATGATAGTGAAATTGGTTCTGATATGTATGAGTATGAATTATTC
AAACACACAGAATTTGGAGATGCCATTAGTGAAGGGCAGATTATTGCCAT
ATATTCAAGCGAAAACGTTAACGACCCATTTTTTTGTGCAAAGTTTTGTC
TAAAGCACACACGGATAAAAATATAACTGATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009906XLOC_009906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017706-exon-sc0000273-1491911889:38145..39028TCONS_00017706-exon-sc0000273-1491911889:38145..39028Clytia hemisphaericaexon
TCONS_00017706-exon-sc0000273-1510915933:38145..39028TCONS_00017706-exon-sc0000273-1510915933:38145..39028Clytia hemisphaericaexon
TCONS_00017706-exon-sc0000273-1575043694:38145..39028TCONS_00017706-exon-sc0000273-1575043694:38145..39028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:38145..39028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.297553	0.174666	0.212639	0.50409	0.0675737	0.126523	0.044291	0	0	0	0.0349558	0.0726038	0	0	0	0	0	0	0	0.0743612	0	0	0.112862	0.0503633	0	0	0.0583371	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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