TCONS_00017704 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017704
Unique NameTCONS_00017704
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017704 ID=TCONS_00017704|Name=TCONS_00017704|organism=Clytia hemisphaerica|type=transcript|length=747bp
NNCTCTTTCCCGTGTTTTCGTTTGCGTGTAATCATGGAAGTAACAGTTGA
AGTAGTAGCTGAAGTTGAAGTGTCATATTGTTTGAGTGGAGAACAAGCTG
GCTTGTTTCCTTGTTTGGAAATCATTACAGCTGCTTTACTAGAAGCAGTA
AAGGTTCTTGTAGTTGTTGGTGGAACGGATTCATTCTGACTCTGAGGTAC
ATCAATGTTCTGAGCGACAGTCGTTGAGTCATTATTGTCATTTGTCGAGA
TGTCATCAGTATTTTTACTGGAAGATTGCTTATCAGcttgttttgaaata
attacAGATACATTACTGGAAGAAGTAGAAGTTGTGGTTGTTGGTGTAGT
TGATTTACTCTGACTTTCAGTTACAGAAATATCGTCAGCGGTGGTTGATA
CGGTTTCATTTGTCGTGGTGTCGTTGTTCGTTGaatgttctttttctttt
ggcTGTCTTGTGCCATTAAAACCCTTTCTCTTCGTTTTTCTGATACTTTT
GTACTTGTCCACTCTGTTTCTAACTTGTTTTTCAGCTTTAAAACATTTGT
CAATCTTGCCATCCATGAAAATAACAGTATCTATATCTTATCAATGTCCT
AGGGTACTCCCACCTCCAAAGCAACATTTTTTGATAAATCTCATCTAATT
TACAACCATTTAAGGCCCTATTCATACTGTAAAACGGCTTTTTGAATAAA
GGCCGTTCTACACGAAAGAAATCGTTGAAAAGCGATATCAAGGTGGC
Run BLAST on NCBI

protein sequence of TCONS_00017704-protein

>TCONS_00017704-protein ID=TCONS_00017704-protein|Name=TCONS_00017704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MDGKIDKCFKAEKQVRNRVDKYKSIRKTKRKGFNGTRQPKEKEHSTNNDT
TTNETVSTTADDISVTESQSKSTTPTTTTSTSSSNVSVIISKQADKQSSS
KNTDDISTNDNNDSTTVAQNIDVPQSQNESVPPTTTRTFTASSKAAVMIS
KQGNKPACSPLKQYDTSTSATTSTVTSMITRKRKHGKE
Run BLAST on NCBI

transcript from alignment at sc0000273:32195..32941

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017704 ID=TCONS_00017704|Name=TCONS_00017704|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at sc0000273:32195..32941 (Clytia hemisphaerica)
GCCACCTTGATATCGCTTTTCAACGATTTCTTTCGTGTAGAACGGCCTTT
ATTCAAAAAGCCGTTTTACAGTATGAATAGGGCCTTAAATGGTTGTAAAT
TAGATGAGATTTATCAAAAAATGTTGCTTTGGAGGTGGGAGTACCCTAGG
ACATTGATAAGATATAGATACTGTTATTTTCATGGATGGCAAGATTGACA
AATGTTTTAAAGCTGAAAAACAAGTTAGAAACAGAGTGGACAAGTACAAA
AGTATCAGAAAAACGAAGAGAAAGGGTTTTAATGGCACAAGACAgccaaa
agaaaaagaacattCAACGAACAACGACACCACGACAAATGAAACCGTAT
CAACCACCGCTGACGATATTTCTGTAACTGAAAGTCAGAGTAAATCAACT
ACACCAACAACCACAACTTCTACTTCTTCCAGTAATGTATCTgtaattat
ttcaaaacaagCTGATAAGCAATCTTCCAGTAAAAATACTGATGACATCT
CGACAAATGACAATAATGACTCAACGACTGTCGCTCAGAACATTGATGTA
CCTCAGAGTCAGAATGAATCCGTTCCACCAACAACTACAAGAACCTTTAC
TGCTTCTAGTAAAGCAGCTGTAATGATTTCCAAACAAGGAAACAAGCCAG
CTTGTTCTCCACTCAAACAATATGACACTTCAACTTCAGCTACTACTTCA
ACTGTTACTTCCATGATTACACGCAAACGAAAACACGGGAAAGAGNN

Coding sequence (CDS) from alignment at sc0000273:32195..32941

>TCONS_00017704 ID=TCONS_00017704|Name=TCONS_00017704|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0000273:32195..32941 (Clytia hemisphaerica)
ATGGATGGCAAGATTGACAAATGTTTTAAAGCTGAAAAACAAGTTAGAAA
CAGAGTGGACAAGTACAAAAGTATCAGAAAAACGAAGAGAAAGGGTTTTA
ATGGCACAAGACAgccaaaagaaaaagaacattCAACGAACAACGACACC
ACGACAAATGAAACCGTATCAACCACCGCTGACGATATTTCTGTAACTGA
AAGTCAGAGTAAATCAACTACACCAACAACCACAACTTCTACTTCTTCCA
GTAATGTATCTgtaattatttcaaaacaagCTGATAAGCAATCTTCCAGT
AAAAATACTGATGACATCTCGACAAATGACAATAATGACTCAACGACTGT
CGCTCAGAACATTGATGTACCTCAGAGTCAGAATGAATCCGTTCCACCAA
CAACTACAAGAACCTTTACTGCTTCTAGTAAAGCAGCTGTAATGATTTCC
AAACAAGGAAACAAGCCAGCTTGTTCTCCACTCAAACAATATGACACTTC
AACTTCAGCTACTACTTCAACTGTTACTTCCATGATTACACGCAAACGAA
AACACGGGAAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009904XLOC_009904Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017704-proteinTCONS_00017704-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017704-exon-sc0000273-1491911889:32195..32941TCONS_00017704-exon-sc0000273-1491911889:32195..32941Clytia hemisphaericaexon
TCONS_00017704-exon-sc0000273-1510915933:32195..32941TCONS_00017704-exon-sc0000273-1510915933:32195..32941Clytia hemisphaericaexon
TCONS_00017704-exon-sc0000273-1575043694:32195..32941TCONS_00017704-exon-sc0000273-1575043694:32195..32941Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:32195..32941 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0746649	0.219144	0	0	0	0	0	0	0	0.0878364	0.131571	0	0	0	0	0	0	0	0.127516	0	0	0	0.354004	0.505505	0	0.193002	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017704 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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