TCONS_00017702 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017702
Unique NameTCONS_00017702
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length430

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017702 ID=TCONS_00017702|Name=TCONS_00017702|organism=Clytia hemisphaerica|type=transcript|length=430bp
TGTGTATTATAATACTTtattttcggaatttctttcGCAAATGCTCAAAA
GTACTATCTACATCGAAATAAAAATGTGCGTCCGACAGAAAAAAGCCCGG
ACCTTTAAACTGAAAAGCACTCATCAGTACAGTACCACTGTTTGCAGGAG
GGACACTCCATCCATTCTTCACCATCACTGTACTTCTTTGAACATTGGAC
ACAGATGTTTTGACCATCAGCAGATGTTTTATGACCGCAGACTACGGGAT
CGTTGGCCTTCCTGTAGTATTGGGTAAAAAATGGTTGTTCGTCGGACGAT
AGACGATAAAATTCCAAGAATGCGATCCCTTGAGGATTTACTTTACGGAT
GGTCTTGTGGATCGTTAGAGTCCCGTTTATGTATGGTGCTTCTCCGATTT
CCTGGGGCtcttcaaaaaaatcactttttg
Run BLAST on NCBI

protein sequence of TCONS_00017702-protein

>TCONS_00017702-protein ID=TCONS_00017702-protein|Name=TCONS_00017702-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
KSDFFEEPQEIGEAPYINGTLTIHKTIRKVNPQGIAFLEFYRLSSDEQPF
FTQYYRKANDPVVCGHKTSADGQNICVQCSKKYSDGEEWMECPSCKQWYC
TDECFSV
Run BLAST on NCBI

transcript from alignment at sc0000273:28469..28898

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017702 ID=TCONS_00017702|Name=TCONS_00017702|organism=Clytia hemisphaerica|type=transcript|length=430bp|location=Sequence derived from alignment at sc0000273:28469..28898 (Clytia hemisphaerica)
caaaaagtgatttttttgaagaGCCCCAGGAAATCGGAGAAGCACCATAC
ATAAACGGGACTCTAACGATCCACAAGACCATCCGTAAAGTAAATCCTCA
AGGGATCGCATTCTTGGAATTTTATCGTCTATCGTCCGACGAACAACCAT
TTTTTACCCAATACTACAGGAAGGCCAACGATCCCGTAGTCTGCGGTCAT
AAAACATCTGCTGATGGTCAAAACATCTGTGTCCAATGTTCAAAGAAGTA
CAGTGATGGTGAAGAATGGATGGAGTGTCCCTCCTGCAAACAGTGGTACT
GTACTGATGAGTGCTTTTCAGTTTAAAGGTCCGGGCTTTTTTCTGTCGGA
CGCACATTTTTATTTCGATGTAGATAGTACTTTTGAGCATTTGCgaaaga
aattccgaaaataAAGTATTATAATACACA

Coding sequence (CDS) from alignment at sc0000273:28469..28898

>TCONS_00017702 ID=TCONS_00017702|Name=TCONS_00017702|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000273:28469..28898 (Clytia hemisphaerica)
aaaagtgatttttttgaagaGCCCCAGGAAATCGGAGAAGCACCATACAT
AAACGGGACTCTAACGATCCACAAGACCATCCGTAAAGTAAATCCTCAAG
GGATCGCATTCTTGGAATTTTATCGTCTATCGTCCGACGAACAACCATTT
TTTACCCAATACTACAGGAAGGCCAACGATCCCGTAGTCTGCGGTCATAA
AACATCTGCTGATGGTCAAAACATCTGTGTCCAATGTTCAAAGAAGTACA
GTGATGGTGAAGAATGGATGGAGTGTCCCTCCTGCAAACAGTGGTACTGT
ACTGATGAGTGCTTTTCAGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009902XLOC_009902Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017702-proteinTCONS_00017702-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017702-exon-sc0000273-1491911889:28469..28898TCONS_00017702-exon-sc0000273-1491911889:28469..28898Clytia hemisphaericaexon
TCONS_00017702-exon-sc0000273-1510915933:28469..28898TCONS_00017702-exon-sc0000273-1510915933:28469..28898Clytia hemisphaericaexon
TCONS_00017702-exon-sc0000273-1575043694:28469..28898TCONS_00017702-exon-sc0000273-1575043694:28469..28898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000273supercontigsc0000273:28469..28898 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.690454	0.647402	0.546642	0.427834	0.677716	0.362727	9.52997	7.95201	4.92968	2.42211	0.416412	2.86768	0.915318	1.62992	1.29252	1.94749	0.752562	0.996485	0.830327	0.740439	0	0.299723	0	0.280497	0.447824	0.461343	0	0.36771	0.287072	0.181536
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017702 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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