TCONS_00017649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017649
Unique NameTCONS_00017649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017649 ID=TCONS_00017649|Name=TCONS_00017649|organism=Clytia hemisphaerica|type=transcript|length=600bp
agAATGTGTTATTGAGCGTGCATAAGAATGATGTGATTAGATGGCCAACC
CAAATTGATATAAGAATAATATTAATTCTTCGATTTGTTATAATTTCATG
ATATTGGAATGGTTTTGTGATACGCGTGTATCTATCATACGTAATAAAAA
CGATGGAGAAAATAGAACAGCAAATTATCCACGTTCCAACTAAAAATGCT
ACCTTCTTGAATAATGCACTGACTTCATGATCAATATGGTTGAAGAACCA
TAATGCTGCTGGGTAACAGACATAACCAATTAAGCAATCACTGGCTCCCA
AAGATGTTAGAACTTTATTGGATTTCGACCGTTGGGATGGTTGTAATAGA
ACTATCAATGAGAAGGTGTTTCCAAACGCTGCAATGATCGCTGATAAGAC
ATACAAAATACTGATGATCAgaatgaaaatcgaatttggcagaCTCCAGC
CTTCCATTCCCTGTTatggaaattctgagcaaggcCTTCTGTTTCTCCTT
CTCGTGAAAAAGCAGTGACagcacttttttcttttgtgttaGTTTCCTTT
CTGTAACATCACAAGTACACGCCTGGAAAACAATAGCAAATCAATTATAC
Run BLAST on NCBI

protein sequence of TCONS_00017649-protein

>TCONS_00017649-protein ID=TCONS_00017649-protein|Name=TCONS_00017649-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
MEGWSLPNSIFILIISILYVLSAIIAAFGNTFSLIVLLQPSQRSKSNKVL
TSLGASDCLIGYVCYPAALWFFNHIDHEVSALFKKVAFLVGTWIICCSIF
SIVFITYDRYTRITKPFQYHEIITNRRINIILISIWVGHLITSFLCTLNN
TF
Run BLAST on NCBI

transcript from alignment at sc0000271:154413..155012

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017649 ID=TCONS_00017649|Name=TCONS_00017649|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0000271:154413..155012 (Clytia hemisphaerica)
GTATAATTGATTTGCTATTGTTTTCCAGGCGTGTACTTGTGATGTTACAG
AAAGGAAACtaacacaaaagaaaaaagtgctGTCACTGCTTTTTCACGAG
AAGGAGAAACAGAAGgccttgctcagaatttccatAACAGGGAATGGAAG
GCTGGAGtctgccaaattcgattttcattcTGATCATCAGTATTTTGTAT
GTCTTATCAGCGATCATTGCAGCGTTTGGAAACACCTTCTCATTGATAGT
TCTATTACAACCATCCCAACGGTCGAAATCCAATAAAGTTCTAACATCTT
TGGGAGCCAGTGATTGCTTAATTGGTTATGTCTGTTACCCAGCAGCATTA
TGGTTCTTCAACCATATTGATCATGAAGTCAGTGCATTATTCAAGAAGGT
AGCATTTTTAGTTGGAACGTGGATAATTTGCTGTTCTATTTTCTCCATCG
TTTTTATTACGTATGATAGATACACGCGTATCACAAAACCATTCCAATAT
CATGAAATTATAACAAATCGAAGAATTAATATTATTCTTATATCAATTTG
GGTTGGCCATCTAATCACATCATTCTTATGCACGCTCAATAACACATTct

Coding sequence (CDS) from alignment at sc0000271:154413..155012

>TCONS_00017649 ID=TCONS_00017649|Name=TCONS_00017649|organism=Clytia hemisphaerica|type=CDS|length=456bp|location=Sequence derived from alignment at sc0000271:154413..155012 (Clytia hemisphaerica)
ATGGAAGGCTGGAGtctgccaaattcgattttcattcTGATCATCAGTAT
TTTGTATGTCTTATCAGCGATCATTGCAGCGTTTGGAAACACCTTCTCAT
TGATAGTTCTATTACAACCATCCCAACGGTCGAAATCCAATAAAGTTCTA
ACATCTTTGGGAGCCAGTGATTGCTTAATTGGTTATGTCTGTTACCCAGC
AGCATTATGGTTCTTCAACCATATTGATCATGAAGTCAGTGCATTATTCA
AGAAGGTAGCATTTTTAGTTGGAACGTGGATAATTTGCTGTTCTATTTTC
TCCATCGTTTTTATTACGTATGATAGATACACGCGTATCACAAAACCATT
CCAATATCATGAAATTATAACAAATCGAAGAATTAATATTATTCTTATAT
CAATTTGGGTTGGCCATCTAATCACATCATTCTTATGCACGCTCAATAAC
ACATTc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009866XLOC_009866Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017649-proteinTCONS_00017649-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017649-exon-sc0000271-1491911889:154413..155012TCONS_00017649-exon-sc0000271-1491911889:154413..155012Clytia hemisphaericaexon
TCONS_00017649-exon-sc0000271-1510915933:154413..155012TCONS_00017649-exon-sc0000271-1510915933:154413..155012Clytia hemisphaericaexon
TCONS_00017649-exon-sc0000271-1575043694:154413..155012TCONS_00017649-exon-sc0000271-1575043694:154413..155012Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000271supercontigsc0000271:154413..155012 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.635151	0.707854	1.74651	1.00511	0	0.290077	0.116655	0.764479	0.53523	0	0.0919276	0.604296	0	0.188009	0.0515228	0	0	0	0	0	0	0	0	0	0.194838	0.173889	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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