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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00017551 ID=TCONS_00017551|Name=TCONS_00017551|organism=Clytia hemisphaerica|type=transcript|length=807bp
AAAAGATTGTTTAGAATCATTTCACTTATTACTCAATCGTGATGCACATT
AACATGTTGGGAATAGATAAAGGTCTATTTGTAACACTTGTTACAATCAA
TGTTTTTACTGGATTAAGCGCAAGATCACCATCTGATGCAAGAAGTTCAA
AAGAGTTAAAAAACGATTACTGGAATTCGTGGAAGACTCgttttaaatca
aaaaacaaaccGATAACCAATAGACCAACAATGGTGTGGAAAGATTTTGA
ATGGCTCGCAAGAACACCAAAACCATTTGaaagatttgaaagatttgaaa
TCAAACCATTACCAAAGATTCCAAAGTTGAGAATAAAGACTCCAAAAATT
CCGCGGATAAAGCTGAGATTCCTTGGTTTTCTTGGCATCCCTCTTCTCTC
TTTCTTAGCTTTCTTGTTGAACCTCTGCTTATGTCGAAAAAGAAGGAATG
TGTATGAAGGTACAACTTTTGTCTATCGTGCTGATGATGAAACGGTTCGC
TTGAATGTTGATGAGCAGATACGTGATCAAAACGGTCAGCCACACGATCA
ATACGGTCAGCCACGTGATCAATACGGTCAGTCACGTGATCAATACGGGC
ATCCCCTCGATCAAAACGGTCAGCCAAACGATCAATACGGTCAGTCGCTT
GACCAATATGTTCAATTCGACCAGGCAACTGATCAATACGGTCAGTCGCT
TGACCAATATGATCAATTCGACCAGGCAACTGATCAATACGGTCAGTCGC
TTGACCAATATGATCAATTCGACCAGGTAACTGATCAATACGGTCAGTCA
CGCGACC Run BLAST on NCBI protein sequence of TCONS_00017551-protein >TCONS_00017551-protein ID=TCONS_00017551-protein|Name=TCONS_00017551-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MHINMLGIDKGLFVTLVTINVFTGLSARSPSDARSSKELKNDYWNSWKTR
FKSKNKPITNRPTMVWKDFEWLARTPKPFERFERFEIKPLPKIPKLRIKT
PKIPRIKLRFLGFLGIPLLSFLAFLLNLCLCRKRRNVYEGTTFVYRADDE
TVRLNVDEQIRDQNGQPHDQYGQPRDQYGQSRDQYGHPLDQNGQPNDQYG
QSLDQYVQFDQATDQYGQSLDQYDQFDQATDQYGQSLDQYDQFDQVTDQY
GQSRD Run BLAST on NCBI transcript from alignment at sc0000269:363730..364722- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00017551 ID=TCONS_00017551|Name=TCONS_00017551|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0000269:363730..364722- (Clytia hemisphaerica)
AAAAGATTGTTTAGAATCATTTCACTTATTACTCAATCGTGATGCACATT
AACATGTTGGGAATAGATAAAGGTCTATTTGTAACACTTGTTACAATCAA
TGTTTTTACTGGATTAAGCGCAAGATCACCATCTGATGCAAGAAGTTCAA
AAGAGTTAAAAAACGATTACTGGAATTCGTGGAAGACTCGTTTTAAATCA
AAAAACAAACCGATAACCAATAGACCAACAATGGTGTGGAAAGATTTTGA
ATGGCTCGCAAGAACACCAAAACCATTTGAAAGATTTGAAAGATTTGAAA
TCAAACCATTACCAAAGATTCCAAAGTTGAGAATAAAGACTCCAAAAATT
CCGCGGATAAAGCTGAGATTCCTTGGTTTTCTTGGCATCCCTCTTCTCTC
TTTCTTAGCTTTCTTGTTGAACCTCTGCTTATGTCGAAAAAGAAGGAATG
TGTATGAAGGTACAACTTTTGTCTATCGTGCTGATGATGAAACGGTTCGC
TTGAATGTTGATGAGCAGATACGTGATCAAAACGGTCAGCCACACGATCA
ATACGGTCAGCCACGTGATCAATACGGTCAGTCACGTGATCAATACGGGC
ATCCCCTCGATCAAAACGGTCAGCCAAACGATCAATACGGTCAGTCGCTT
GACCAATATGTTCAATTCGACCAGGCAACTGATCAATACGGTCAGTCGCT
TGACCAATATGATCAATTCGACCAGGCAACTGATCAATACGGTCAGTCGC
TTGACCAATATGATCAATTCGACCAGGCAACTGATCAATACGGGCATCCC
CTCGATCAAAACGGTCAACCACACGATCAATACGGTCAGTCGCTTGACCA
ATATGATCAATTCGACCAGGCAACTGATCAATACGGGCATCCCCTCGATC
AAAACGGTCAGCCACACGATCAATACGGTCAGTCACGCGACCAATATGAT
CAATTCGACCAGGTAACTGATCAATACGGTCAGTCACGCGACC Coding sequence (CDS) from alignment at sc0000269:363730..364722- >TCONS_00017551 ID=TCONS_00017551|Name=TCONS_00017551|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at sc0000269:363730..364722- (Clytia hemisphaerica)
GTAACTGATCAATACGGTCAGTCACGCGACATGCACATTAACATGTTGGG
AATAGATAAAGGTCTATTTGTAACACTTGTTACAATCAATGTTTTTACTG
GATTAAGCGCAAGATCACCATCTGATGCAAGAAGTTCAAAAGAGTTAAAA
AACGATTACTGGAATTCGTGGAAGACTCGTTTTAAATCAAAAAACAAACC
GATAACCAATAGACCAACAATGGTGTGGAAAGATTTTGAATGGCTCGCAA
GAACACCAAAACCATTTGAAAGATTTGAAAGATTTGAAATCAAACCATTA
CCAAAGATTCCAAAGTTGAGAATAAAGACTCCAAAAATTCCGCGGATAAA
GCTGAGATTCCTTGGTTTTCTTGGCATCCCTCTTCTCTCTTTCTTAGCTT
TCTTGTTGAACCTCTGCTTATGTCGAAAAAGAAGGAATGTGTATGAAGGT
ACAACTTTTGTCTATCGTGCTGATGATGAAACGGTTCGCTTGAATGTTGA
TGAGCAGATACGTGATCAAAACGGTCAGCCACACGATCAATACGGTCAGC
CACGTGATCAATACGGTCAGTCACGTGATCAATACGGGCATCCCCTCGAT
CAAAACGGTCAGCCAAACGATCAATACGGTCAGTCGCTTGACCAATATGT
TCAATTCGACCAGGCAACTGATCAATACGGTCAGTCGCTTGACCAATATG
ATCAATTCGACCAGGCAACTGATCAATACGGTCAGTCGCTTGACCAATAT
GATCAATTCGACCAGGTAACTGATCAATACGGTCAGTCACGCGACATGCA
CATTAACATGTTGGGAATAGATAAAGGTCTATTTGTAACACTTGTTACAA
TCAATGTTTTTACTGGATTAAGCGCAAGATCACCATCTGATGCAAGAAGT
TCAAAAGAGTTAAAAAACGATTACTGGAATTCGTGGAAGACTCGTTTTAA
ATCAAAAAACAAACCGATAACCAATAGACCAACAATGGTGTGGAAAGATT
TTGAATGGCTCGCAAGAACACCAAAACCATTTGAAAGATTTGAAAGATTT
GAAATCAAACCATTACCAAAGATTCCAAAGTTGAGAATAAAGACTCCAAA
AATTCCGCGGATAAAGCTGAGATTCCTTGGTTTTCTTGGCATCCCTCTTC
TCTCTTTCTTAGCTTTCTTGTTGAACCTCTGCTTATGTCGAAAAAGAAGG
AATGTGTATGAAGGTACAACTTTTGTCTATCGTGCTGATGATGAAACGGT
TCGCTTGAATGTTGATGAGCAGATACGTGATCAAAACGGTCAGCCACACG
ATCAATACGGTCAGCCACGTGATCAATACGGTCAGTCACGTGATCAATAC
GGGCATCCCCTCGATCAAAACGGTCAGCCAAACGATCAATACGGTCAGTC
GCTTGACCAATATGTTCAATTCGACCAGGCAACTGATCAATACGGTCAGT
CGCTTGACCAATATGATCAATTCGACCAGGCAACTGATCAATACGGTCAG
TCGCTTGACCAATATGATCAATTCGACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00017551-exon-sc0000269-1575043694:363947..364722 | TCONS_00017551-exon-sc0000269-1575043694:363947..364722 | Clytia hemisphaerica | exon |
| TCONS_00017551-exon-sc0000269-1575043694:363730..363760 | TCONS_00017551-exon-sc0000269-1575043694:363730..363760 | Clytia hemisphaerica | exon |
| TCONS_00017551-exon-sc0000269-1510915933:363947..364722 | TCONS_00017551-exon-sc0000269-1510915933:363947..364722 | Clytia hemisphaerica | exon |
| TCONS_00017551-exon-sc0000269-1510915933:363730..363760 | TCONS_00017551-exon-sc0000269-1510915933:363730..363760 | Clytia hemisphaerica | exon |
| TCONS_00017551-exon-sc0000269-1491911889:363947..364722 | TCONS_00017551-exon-sc0000269-1491911889:363947..364722 | Clytia hemisphaerica | exon |
| TCONS_00017551-exon-sc0000269-1491911889:363730..363760 | TCONS_00017551-exon-sc0000269-1491911889:363730..363760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000269 | supercontig | sc0000269:363730..364722 - |
Blast
The following BLAST results are available for this feature:
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