TCONS_00017539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017539
Unique NameTCONS_00017539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017539 ID=TCONS_00017539|Name=TCONS_00017539|organism=Clytia hemisphaerica|type=transcript|length=320bp
CTAttctattttgttgtttttcagaCATCAGAAACAAGCAAAACGGACGT
TTCCGGCCTTTCACAAGCGACCGGTGGTGGTGGAACAGCGGAACCCTCTC
TAGACGGTGTGCCGGTCGACGAAAGTTTGTTCCAGGACCTTGACCTTGAC
GATCTTGATATTGATGACGAGTGAAAGATTTTTTGTCCATCGGTAGATAA
GgCGTCCAGAAAATGAAGAGGGAGTTGAGTTGTTATTGGGGAGTTATGAA
TAAACTCTTACCACAATAATTTCGTAAGATTACAGtttattttataaaac
tttTTGTAACTCACGTCAAC
Run BLAST on NCBI

transcript from alignment at sc0000269:60098..60663-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017539 ID=TCONS_00017539|Name=TCONS_00017539|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0000269:60098..60663- (Clytia hemisphaerica)
CTATTCTATTTTGTTGTTTTTCAGACATCAGAAACAAGCAAAACGGACGT
TTCCGGCCTTTCACAAGCGACCGGTGGTGGTGGAACAGCGGAACCCTCTC
TAGACGGTGTGCCGGTCGACGAAAGTTTGTTCCAGGACCTTGACCTTGAC
GATCTTGATATTGATGACGAGTGAAAGATTTTTTGTCCATCGGTAGATAA
GGTCTTATTTTTACTTTCGGTTTTTCTATAAATAAATTTTATTATTTTTG
AAATTAAAATTAACGTCCTTTTTTCAATGAGGGGTTGGAAAGGAAAAAGG
AATAGAGACGAAAAAAGTTCGAATTACAGTTGCATATCGGTTAAAAAAAT
GGGTGTGAGGGCGAGCAATATTTTGAATTAATGTTTATTATGGATTCACG
ATTTGAAGAGAAACTTTTTTCAAAAAATAAAATATTGAAATTTTTAGGCG
TCCAGAAAATGAAGAGGGAGTTGAGTTGTTATTGGGGAGTTATGAATAAA
CTCTTACCACAATAATTTCGTAAGATTACAGTTTATTTTATAAAACTTTT
TGTAACTCACGTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009801XLOC_009801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017539-exon-sc0000269-1575043694:60463..60663TCONS_00017539-exon-sc0000269-1575043694:60463..60663Clytia hemisphaericaexon
TCONS_00017539-exon-sc0000269-1575043694:60098..60216TCONS_00017539-exon-sc0000269-1575043694:60098..60216Clytia hemisphaericaexon
TCONS_00017539-exon-sc0000269-1510915933:60463..60663TCONS_00017539-exon-sc0000269-1510915933:60463..60663Clytia hemisphaericaexon
TCONS_00017539-exon-sc0000269-1510915933:60098..60216TCONS_00017539-exon-sc0000269-1510915933:60098..60216Clytia hemisphaericaexon
TCONS_00017539-exon-sc0000269-1491911889:60463..60663TCONS_00017539-exon-sc0000269-1491911889:60463..60663Clytia hemisphaericaexon
TCONS_00017539-exon-sc0000269-1491911889:60098..60216TCONS_00017539-exon-sc0000269-1491911889:60098..60216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:60098..60663 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.18313	0.911855	1.84572	1.81191	11.7281	3.1286	10.2656	12.2674	10.4828	9.10392	0	0	0	0	0	0	0	0	0	0	7.5377	10.277	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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