TCONS_00017538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00017538
Unique NameTCONS_00017538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length290

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00017538 ID=TCONS_00017538|Name=TCONS_00017538|organism=Clytia hemisphaerica|type=transcript|length=290bp
cagaCATCAGAAACAAGCAAAACGGACGTTTCCGGCCTTTCACAAGCGAC
CGGTGGTGGTGGAACAGCGGAACCCTCTCTAGACGGTGTGCCGGTCGACG
AAAGTTTGTTCCAGGACCTTGACCTTGACGATCTTGATATTGATGACGAG
TGAAAGATTTTTTGTCCATCGgCGTCCAGAAAATGAAGAGGGAGTTGAGT
TGTTATTGGGGAGTTATGAATAAACTCTTACCACAATAATTTCGTAAGAT
TACAGtttattttataaaactttTTGTAACTCACGTCAAC
Run BLAST on NCBI

transcript from alignment at sc0000269:60098..60642-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00017538 ID=TCONS_00017538|Name=TCONS_00017538|organism=Clytia hemisphaerica|type=transcript|length=545bp|location=Sequence derived from alignment at sc0000269:60098..60642- (Clytia hemisphaerica)
CAGACATCAGAAACAAGCAAAACGGACGTTTCCGGCCTTTCACAAGCGAC
CGGTGGTGGTGGAACAGCGGAACCCTCTCTAGACGGTGTGCCGGTCGACG
AAAGTTTGTTCCAGGACCTTGACCTTGACGATCTTGATATTGATGACGAG
TGAAAGATTTTTTGTCCATCGGTAGATAAGGTCTTATTTTTACTTTCGGT
TTTTCTATAAATAAATTTTATTATTTTTGAAATTAAAATTAACGTCCTTT
TTTCAATGAGGGGTTGGAAAGGAAAAAGGAATAGAGACGAAAAAAGTTCG
AATTACAGTTGCATATCGGTTAAAAAAATGGGTGTGAGGGCGAGCAATAT
TTTGAATTAATGTTTATTATGGATTCACGATTTGAAGAGAAACTTTTTTC
AAAAAATAAAATATTGAAATTTTTAGGCGTCCAGAAAATGAAGAGGGAGT
TGAGTTGTTATTGGGGAGTTATGAATAAACTCTTACCACAATAATTTCGT
AAGATTACAGTTTATTTTATAAAACTTTTTGTAACTCACGTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_009801XLOC_009801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00017538-exon-sc0000269-1575043694:60472..60642TCONS_00017538-exon-sc0000269-1575043694:60472..60642Clytia hemisphaericaexon
TCONS_00017538-exon-sc0000269-1575043694:60098..60216TCONS_00017538-exon-sc0000269-1575043694:60098..60216Clytia hemisphaericaexon
TCONS_00017538-exon-sc0000269-1510915933:60472..60642TCONS_00017538-exon-sc0000269-1510915933:60472..60642Clytia hemisphaericaexon
TCONS_00017538-exon-sc0000269-1510915933:60098..60216TCONS_00017538-exon-sc0000269-1510915933:60098..60216Clytia hemisphaericaexon
TCONS_00017538-exon-sc0000269-1491911889:60472..60642TCONS_00017538-exon-sc0000269-1491911889:60472..60642Clytia hemisphaericaexon
TCONS_00017538-exon-sc0000269-1491911889:60098..60216TCONS_00017538-exon-sc0000269-1491911889:60098..60216Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000269supercontigsc0000269:60098..60642 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
40.8996	35.3637	20.9935	21.0454	0	0	0	0	57.2198	50.069	116.687	109.79	139.23	165.405	91.5123	81.9709	74.2414	57.6765	106.64	72.9377	59.9086	47.2463	43.2356	52.9385	0	0	45.9245	53.9843	30.5922	33.5727
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00017538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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